data_2NNH
#
_model_server_result.job_id            T0ATd60D5UkdCszrsM0R8g 
_model_server_result.datetime_utc      '2024-11-30 17:04:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2nnh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    2NNH 
#
_exptl.entry_id    2NNH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.435 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(9cis)-retinoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NNH 
_cell.length_a            139.81 
_cell.length_b            163.62 
_cell.length_c            73.555 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 B SG CYS 417 B CYS 435 1_555 I FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
#
_chem_comp.formula           'C20 H28 O2' 
_chem_comp.formula_weight    300.435 
_chem_comp.id                9CR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(9cis)-retinoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C15 9CR doub 1 n n 
C15 C14 9CR sing 2 n n 
C15 O2 9CR sing 3 n n 
C14 C13 9CR doub 4 e n 
C13 C12 9CR sing 5 n n 
C13 C20 9CR sing 6 n n 
C12 C11 9CR doub 7 e n 
C11 C10 9CR sing 8 n n 
C18 C5 9CR sing 9 n n 
C10 C9 9CR doub 10 z n 
C9 C19 9CR sing 11 n n 
C9 C8 9CR sing 12 n n 
C8 C7 9CR doub 13 e n 
C5 C4 9CR sing 14 n n 
C5 C6 9CR doub 15 n n 
C4 C3 9CR sing 16 n n 
C7 C6 9CR sing 17 n n 
C6 C1 9CR sing 18 n n 
C3 C2 9CR sing 19 n n 
C1 C17 9CR sing 20 n n 
C1 C2 9CR sing 21 n n 
C1 C16 9CR sing 22 n n 
C2 H1 9CR sing 23 n n 
C2 H2 9CR sing 24 n n 
C3 H3 9CR sing 25 n n 
C3 H4 9CR sing 26 n n 
C4 H5 9CR sing 27 n n 
C4 H6 9CR sing 28 n n 
C7 H7 9CR sing 29 n n 
C8 H8 9CR sing 30 n n 
C10 H9 9CR sing 31 n n 
C11 H10 9CR sing 32 n n 
C12 H11 9CR sing 33 n n 
C14 H12 9CR sing 34 n n 
C16 H13 9CR sing 35 n n 
C16 H14 9CR sing 36 n n 
C16 H15 9CR sing 37 n n 
C17 H16 9CR sing 38 n n 
C17 H17 9CR sing 39 n n 
C17 H18 9CR sing 40 n n 
C18 H19 9CR sing 41 n n 
C18 H20 9CR sing 42 n n 
C18 H21 9CR sing 43 n n 
C19 H22 9CR sing 44 n n 
C19 H23 9CR sing 45 n n 
C19 H24 9CR sing 46 n n 
C20 H25 9CR sing 47 n n 
C20 H26 9CR sing 48 n n 
C20 H27 9CR sing 49 n n 
O2 H28 9CR sing 50 n n 
#
_atom_sites.entry_id                     2NNH 
_atom_sites.fract_transf_matrix[1][1]    0.007153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 505 505 SO4 SO4 . 
D 3 HEM A 1 500 500 HEM HEM . 
E 4 9CR A 1 501 501 9CR REA . 
F 4 9CR A 1 502 502 9CR REA . 
G 5 PLM A 1 503 503 PLM PLM . 
H 2 SO4 B 1 504 504 SO4 SO4 . 
I 3 HEM B 1 500 500 HEM HEM . 
J 4 9CR B 1 501 501 9CR REA . 
K 4 9CR B 1 502 502 9CR REA . 
L 5 PLM B 1 503 503 PLM PLM . 
M 6 HOH A 1 506 4 HOH HOH . 
M 6 HOH A 2 507 5 HOH HOH . 
M 6 HOH A 3 508 8 HOH HOH . 
M 6 HOH A 4 509 10 HOH HOH . 
M 6 HOH A 5 510 11 HOH HOH . 
M 6 HOH A 6 511 12 HOH HOH . 
M 6 HOH A 7 512 13 HOH HOH . 
M 6 HOH A 8 513 14 HOH HOH . 
M 6 HOH A 9 514 15 HOH HOH . 
M 6 HOH A 10 515 19 HOH HOH . 
M 6 HOH A 11 516 20 HOH HOH . 
M 6 HOH A 12 517 25 HOH HOH . 
M 6 HOH A 13 518 29 HOH HOH . 
M 6 HOH A 14 519 30 HOH HOH . 
M 6 HOH A 15 520 31 HOH HOH . 
M 6 HOH A 16 521 32 HOH HOH . 
M 6 HOH A 17 522 33 HOH HOH . 
M 6 HOH A 18 523 35 HOH HOH . 
M 6 HOH A 19 524 37 HOH HOH . 
M 6 HOH A 20 525 38 HOH HOH . 
M 6 HOH A 21 526 43 HOH HOH . 
M 6 HOH A 22 527 47 HOH HOH . 
M 6 HOH A 23 528 49 HOH HOH . 
M 6 HOH A 24 529 51 HOH HOH . 
M 6 HOH A 25 530 54 HOH HOH . 
M 6 HOH A 26 531 55 HOH HOH . 
M 6 HOH A 27 532 56 HOH HOH . 
M 6 HOH A 28 533 57 HOH HOH . 
M 6 HOH A 29 534 60 HOH HOH . 
M 6 HOH A 30 535 61 HOH HOH . 
M 6 HOH A 31 536 62 HOH HOH . 
M 6 HOH A 32 537 63 HOH HOH . 
M 6 HOH A 33 538 67 HOH HOH . 
M 6 HOH A 34 539 68 HOH HOH . 
M 6 HOH A 35 540 72 HOH HOH . 
M 6 HOH A 36 541 73 HOH HOH . 
M 6 HOH A 37 542 74 HOH HOH . 
M 6 HOH A 38 543 78 HOH HOH . 
M 6 HOH A 39 544 83 HOH HOH . 
M 6 HOH A 40 545 84 HOH HOH . 
M 6 HOH A 41 546 86 HOH HOH . 
M 6 HOH A 42 547 87 HOH HOH . 
M 6 HOH A 43 548 90 HOH HOH . 
M 6 HOH A 44 549 91 HOH HOH . 
N 6 HOH B 1 505 1 HOH HOH . 
N 6 HOH B 2 506 2 HOH HOH . 
N 6 HOH B 3 507 3 HOH HOH . 
N 6 HOH B 4 508 6 HOH HOH . 
N 6 HOH B 5 509 7 HOH HOH . 
N 6 HOH B 6 510 9 HOH HOH . 
N 6 HOH B 7 511 16 HOH HOH . 
N 6 HOH B 8 512 17 HOH HOH . 
N 6 HOH B 9 513 18 HOH HOH . 
N 6 HOH B 10 514 21 HOH HOH . 
N 6 HOH B 11 515 22 HOH HOH . 
N 6 HOH B 12 516 23 HOH HOH . 
N 6 HOH B 13 517 24 HOH HOH . 
N 6 HOH B 14 518 26 HOH HOH . 
N 6 HOH B 15 519 27 HOH HOH . 
N 6 HOH B 16 520 28 HOH HOH . 
N 6 HOH B 17 521 34 HOH HOH . 
N 6 HOH B 18 522 36 HOH HOH . 
N 6 HOH B 19 523 39 HOH HOH . 
N 6 HOH B 20 524 40 HOH HOH . 
N 6 HOH B 21 525 41 HOH HOH . 
N 6 HOH B 22 526 42 HOH HOH . 
N 6 HOH B 23 527 44 HOH HOH . 
N 6 HOH B 24 528 45 HOH HOH . 
N 6 HOH B 25 529 46 HOH HOH . 
N 6 HOH B 26 530 48 HOH HOH . 
N 6 HOH B 27 531 50 HOH HOH . 
N 6 HOH B 28 532 53 HOH HOH . 
N 6 HOH B 29 533 58 HOH HOH . 
N 6 HOH B 30 534 59 HOH HOH . 
N 6 HOH B 31 535 64 HOH HOH . 
N 6 HOH B 32 536 65 HOH HOH . 
N 6 HOH B 33 537 66 HOH HOH . 
N 6 HOH B 34 538 69 HOH HOH . 
N 6 HOH B 35 539 70 HOH HOH . 
N 6 HOH B 36 540 71 HOH HOH . 
N 6 HOH B 37 541 75 HOH HOH . 
N 6 HOH B 38 542 77 HOH HOH . 
N 6 HOH B 39 543 79 HOH HOH . 
N 6 HOH B 40 544 80 HOH HOH . 
N 6 HOH B 41 545 81 HOH HOH . 
N 6 HOH B 42 546 82 HOH HOH . 
N 6 HOH B 43 547 85 HOH HOH . 
N 6 HOH B 44 548 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9CR . . . J 4 -13.715 54.896 7.278 1 53.67 ? C1 9CR 501 B 1 
HETATM 2 C C2 9CR . . . J 4 -15.203 54.729 7.874 1 53.37 ? C2 9CR 501 B 1 
HETATM 3 C C3 9CR . . . J 4 -16.27 54.008 6.951 1 54.2 ? C3 9CR 501 B 1 
HETATM 4 C C4 9CR . . . J 4 -16.264 54.569 5.502 1 52.96 ? C4 9CR 501 B 1 
HETATM 5 C C5 9CR . . . J 4 -14.871 54.704 4.807 1 52.62 ? C5 9CR 501 B 1 
HETATM 6 C C6 9CR . . . J 4 -13.602 54.868 5.596 1 53.57 ? C6 9CR 501 B 1 
HETATM 7 C C7 9CR . . . J 4 -12.258 55.009 5.043 1 53.97 ? C7 9CR 501 B 1 
HETATM 8 C C8 9CR . . . J 4 -11.598 55.997 4.37 1 55.74 ? C8 9CR 501 B 1 
HETATM 9 C C9 9CR . . . J 4 -10.454 56.002 3.521 1 55.7 ? C9 9CR 501 B 1 
HETATM 10 C C10 9CR . . . J 4 -10.163 57.151 2.714 1 56.39 ? C10 9CR 501 B 1 
HETATM 11 C C11 9CR . . . J 4 -10.933 58.332 2.668 1 55.52 ? C11 9CR 501 B 1 
HETATM 12 C C12 9CR . . . J 4 -10.575 59.4 1.878 1 57.52 ? C12 9CR 501 B 1 
HETATM 13 C C13 9CR . . . J 4 -11.267 60.643 1.762 1 60.91 ? C13 9CR 501 B 1 
HETATM 14 C C14 9CR . . . J 4 -10.657 61.559 0.901 1 64.28 ? C14 9CR 501 B 1 
HETATM 15 C C15 9CR . . . J 4 -11.073 63.01 0.526 1 67.89 ? C15 9CR 501 B 1 
HETATM 16 C C16 9CR . . . J 4 -12.899 53.606 7.815 1 53.64 ? C16 9CR 501 B 1 
HETATM 17 C C17 9CR . . . J 4 -13.089 56.081 7.993 1 53.86 ? C17 9CR 501 B 1 
HETATM 18 C C18 9CR . . . J 4 -14.995 54.651 3.284 1 50.22 ? C18 9CR 501 B 1 
HETATM 19 C C19 9CR . . . J 4 -9.468 54.835 3.403 1 55.73 ? C19 9CR 501 B 1 
HETATM 20 C C20 9CR . . . J 4 -12.593 60.993 2.54 1 60.01 ? C20 9CR 501 B 1 
HETATM 21 O O1 9CR . . . J 4 -10.239 63.915 0.679 1 68.48 ? O1 9CR 501 B 1 
HETATM 22 O O2 9CR . . . J 4 -12.236 63.264 0.089 1 67.7 ? O2 9CR 501 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#