data_2NO0 # _model_server_result.job_id hv0fj1IunLI0pe_MD8VfyQ _model_server_result.datetime_utc '2024-11-26 23:00:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2no0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 2NO0 # _exptl.entry_id 2NO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.198 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GEMCITABINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NO0 _cell.length_a 52.3 _cell.length_b 132.4 _cell.length_c 157.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1,2 B,E,F,H 2 3,4 A,B,C,D,E,F,G,H 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 132.4 157.3 3 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 26.15 -66.2 0 4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 26.15 198.6 157.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C9 H11 F2 N3 O4' _chem_comp.formula_weight 263.198 _chem_comp.id GEO _chem_comp.mon_nstd_flag . _chem_comp.name GEMCITABINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2',2'-DIFLUORODEOXYCYTIDINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GEO sing 127 n n O5' H5' GEO sing 128 n n C5' C4' GEO sing 129 n n C5' "H5'1" GEO sing 130 n n C5' "H5'2" GEO sing 131 n n C4' O4' GEO sing 132 n n C4' C3' GEO sing 133 n n C4' H4' GEO sing 134 n n O4' C1' GEO sing 135 n n C1' N1 GEO sing 136 n n C1' C2' GEO sing 137 n n C1' H1' GEO sing 138 n n N1 C6 GEO sing 139 n y N1 C2 GEO sing 140 n y C6 C5 GEO doub 141 n y C6 H6 GEO sing 142 n n C5 C4 GEO sing 143 n y C5 H5 GEO sing 144 n n C4 N3 GEO doub 145 n y C4 N4 GEO sing 146 n n N3 C2 GEO sing 147 n y C2 O2 GEO doub 148 n n N4 HN41 GEO sing 149 n n N4 HN42 GEO sing 150 n n C2' F1 GEO sing 151 n n C2' F2 GEO sing 152 n n C2' C3' GEO sing 153 n n C3' O3' GEO sing 154 n n C3' H3' GEO sing 155 n n O3' H1 GEO sing 156 n n # _atom_sites.entry_id 2NO0 _atom_sites.fract_transf_matrix[1][1] 0.01912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 GEO A 1 302 302 GEO GEO . E 2 ADP B 1 301 301 ADP ADP . F 3 GEO B 1 302 302 GEO GEO . G 4 HOH A 1 303 12 HOH HOH . G 4 HOH A 2 304 15 HOH HOH . G 4 HOH A 3 305 19 HOH HOH . G 4 HOH A 4 306 21 HOH HOH . G 4 HOH A 5 307 23 HOH HOH . G 4 HOH A 6 308 24 HOH HOH . G 4 HOH A 7 309 27 HOH HOH . G 4 HOH A 8 310 29 HOH HOH . G 4 HOH A 9 311 30 HOH HOH . G 4 HOH A 10 312 31 HOH HOH . G 4 HOH A 11 313 32 HOH HOH . G 4 HOH A 12 314 33 HOH HOH . G 4 HOH A 13 315 34 HOH HOH . G 4 HOH A 14 316 39 HOH HOH . G 4 HOH A 15 317 40 HOH HOH . G 4 HOH A 16 318 41 HOH HOH . G 4 HOH A 17 319 42 HOH HOH . G 4 HOH A 18 320 48 HOH HOH . G 4 HOH A 19 321 49 HOH HOH . G 4 HOH A 20 322 50 HOH HOH . G 4 HOH A 21 323 54 HOH HOH . G 4 HOH A 22 324 55 HOH HOH . G 4 HOH A 23 325 56 HOH HOH . G 4 HOH A 24 326 57 HOH HOH . G 4 HOH A 25 327 59 HOH HOH . G 4 HOH A 26 328 60 HOH HOH . G 4 HOH A 27 329 61 HOH HOH . G 4 HOH A 28 330 62 HOH HOH . G 4 HOH A 29 331 64 HOH HOH . G 4 HOH A 30 332 68 HOH HOH . G 4 HOH A 31 333 69 HOH HOH . G 4 HOH A 32 334 73 HOH HOH . G 4 HOH A 33 335 79 HOH HOH . G 4 HOH A 34 336 80 HOH HOH . G 4 HOH A 35 337 81 HOH HOH . G 4 HOH A 36 338 82 HOH HOH . G 4 HOH A 37 339 84 HOH HOH . G 4 HOH A 38 340 85 HOH HOH . G 4 HOH A 39 341 86 HOH HOH . G 4 HOH A 40 342 88 HOH HOH . G 4 HOH A 41 343 91 HOH HOH . G 4 HOH A 42 344 94 HOH HOH . G 4 HOH A 43 345 101 HOH HOH . G 4 HOH A 44 346 104 HOH HOH . G 4 HOH A 45 347 106 HOH HOH . G 4 HOH A 46 348 108 HOH HOH . G 4 HOH A 47 349 111 HOH HOH . G 4 HOH A 48 350 112 HOH HOH . G 4 HOH A 49 351 115 HOH HOH . G 4 HOH A 50 352 117 HOH HOH . G 4 HOH A 51 353 118 HOH HOH . G 4 HOH A 52 354 120 HOH HOH . G 4 HOH A 53 355 121 HOH HOH . G 4 HOH A 54 356 122 HOH HOH . G 4 HOH A 55 357 128 HOH HOH . G 4 HOH A 56 358 129 HOH HOH . G 4 HOH A 57 359 134 HOH HOH . G 4 HOH A 58 360 135 HOH HOH . G 4 HOH A 59 361 136 HOH HOH . G 4 HOH A 60 362 137 HOH HOH . G 4 HOH A 61 363 139 HOH HOH . G 4 HOH A 62 364 140 HOH HOH . G 4 HOH A 63 365 143 HOH HOH . G 4 HOH A 64 366 146 HOH HOH . G 4 HOH A 65 367 147 HOH HOH . G 4 HOH A 66 368 149 HOH HOH . G 4 HOH A 67 369 150 HOH HOH . G 4 HOH A 68 370 152 HOH HOH . G 4 HOH A 69 371 153 HOH HOH . G 4 HOH A 70 372 154 HOH HOH . G 4 HOH A 71 373 156 HOH HOH . G 4 HOH A 72 374 157 HOH HOH . G 4 HOH A 73 375 158 HOH HOH . G 4 HOH A 74 376 162 HOH HOH . G 4 HOH A 75 377 163 HOH HOH . G 4 HOH A 76 378 164 HOH HOH . G 4 HOH A 77 379 165 HOH HOH . G 4 HOH A 78 380 167 HOH HOH . G 4 HOH A 79 381 169 HOH HOH . G 4 HOH A 80 382 170 HOH HOH . G 4 HOH A 81 383 172 HOH HOH . G 4 HOH A 82 384 173 HOH HOH . G 4 HOH A 83 385 175 HOH HOH . G 4 HOH A 84 386 176 HOH HOH . G 4 HOH A 85 387 179 HOH HOH . G 4 HOH A 86 388 181 HOH HOH . G 4 HOH A 87 389 184 HOH HOH . G 4 HOH A 88 390 186 HOH HOH . G 4 HOH A 89 391 187 HOH HOH . G 4 HOH A 90 392 188 HOH HOH . G 4 HOH A 91 393 190 HOH HOH . G 4 HOH A 92 394 191 HOH HOH . G 4 HOH A 93 395 193 HOH HOH . G 4 HOH A 94 396 194 HOH HOH . G 4 HOH A 95 397 195 HOH HOH . G 4 HOH A 96 398 197 HOH HOH . G 4 HOH A 97 399 201 HOH HOH . G 4 HOH A 98 400 202 HOH HOH . G 4 HOH A 99 401 203 HOH HOH . G 4 HOH A 100 402 204 HOH HOH . G 4 HOH A 101 403 205 HOH HOH . G 4 HOH A 102 404 206 HOH HOH . G 4 HOH A 103 405 207 HOH HOH . G 4 HOH A 104 406 208 HOH HOH . G 4 HOH A 105 407 209 HOH HOH . G 4 HOH A 106 408 211 HOH HOH . G 4 HOH A 107 409 217 HOH HOH . G 4 HOH A 108 410 218 HOH HOH . G 4 HOH A 109 411 221 HOH HOH . G 4 HOH A 110 412 222 HOH HOH . G 4 HOH A 111 413 224 HOH HOH . G 4 HOH A 112 414 226 HOH HOH . G 4 HOH A 113 415 228 HOH HOH . G 4 HOH A 114 416 230 HOH HOH . G 4 HOH A 115 417 234 HOH HOH . G 4 HOH A 116 418 236 HOH HOH . G 4 HOH A 117 419 239 HOH HOH . G 4 HOH A 118 420 240 HOH HOH . G 4 HOH A 119 421 241 HOH HOH . G 4 HOH A 120 422 243 HOH HOH . G 4 HOH A 121 423 244 HOH HOH . G 4 HOH A 122 424 246 HOH HOH . G 4 HOH A 123 425 247 HOH HOH . G 4 HOH A 124 426 248 HOH HOH . G 4 HOH A 125 427 249 HOH HOH . G 4 HOH A 126 428 250 HOH HOH . G 4 HOH A 127 429 251 HOH HOH . G 4 HOH A 128 430 252 HOH HOH . G 4 HOH A 129 431 256 HOH HOH . G 4 HOH A 130 432 257 HOH HOH . G 4 HOH A 131 433 259 HOH HOH . G 4 HOH A 132 434 261 HOH HOH . G 4 HOH A 133 435 262 HOH HOH . G 4 HOH A 134 436 265 HOH HOH . G 4 HOH A 135 437 266 HOH HOH . G 4 HOH A 136 438 267 HOH HOH . G 4 HOH A 137 439 270 HOH HOH . G 4 HOH A 138 440 272 HOH HOH . H 4 HOH B 1 303 4 HOH HOH . H 4 HOH B 2 304 6 HOH HOH . H 4 HOH B 3 305 7 HOH HOH . H 4 HOH B 4 306 8 HOH HOH . H 4 HOH B 5 307 9 HOH HOH . H 4 HOH B 6 308 10 HOH HOH . H 4 HOH B 7 309 11 HOH HOH . H 4 HOH B 8 310 13 HOH HOH . H 4 HOH B 9 311 14 HOH HOH . H 4 HOH B 10 312 17 HOH HOH . H 4 HOH B 11 313 18 HOH HOH . H 4 HOH B 12 314 20 HOH HOH . H 4 HOH B 13 315 22 HOH HOH . H 4 HOH B 14 316 25 HOH HOH . H 4 HOH B 15 317 26 HOH HOH . H 4 HOH B 16 318 28 HOH HOH . H 4 HOH B 17 319 35 HOH HOH . H 4 HOH B 18 320 36 HOH HOH . H 4 HOH B 19 321 37 HOH HOH . H 4 HOH B 20 322 38 HOH HOH . H 4 HOH B 21 323 43 HOH HOH . H 4 HOH B 22 324 44 HOH HOH . H 4 HOH B 23 325 45 HOH HOH . H 4 HOH B 24 326 46 HOH HOH . H 4 HOH B 25 327 47 HOH HOH . H 4 HOH B 26 328 51 HOH HOH . H 4 HOH B 27 329 52 HOH HOH . H 4 HOH B 28 330 53 HOH HOH . H 4 HOH B 29 331 58 HOH HOH . H 4 HOH B 30 332 63 HOH HOH . H 4 HOH B 31 333 65 HOH HOH . H 4 HOH B 32 334 66 HOH HOH . H 4 HOH B 33 335 67 HOH HOH . H 4 HOH B 34 336 70 HOH HOH . H 4 HOH B 35 337 71 HOH HOH . H 4 HOH B 36 338 72 HOH HOH . H 4 HOH B 37 339 74 HOH HOH . H 4 HOH B 38 340 75 HOH HOH . H 4 HOH B 39 341 76 HOH HOH . H 4 HOH B 40 342 77 HOH HOH . H 4 HOH B 41 343 78 HOH HOH . H 4 HOH B 42 344 83 HOH HOH . H 4 HOH B 43 345 87 HOH HOH . H 4 HOH B 44 346 89 HOH HOH . H 4 HOH B 45 347 90 HOH HOH . H 4 HOH B 46 348 92 HOH HOH . H 4 HOH B 47 349 93 HOH HOH . H 4 HOH B 48 350 95 HOH HOH . H 4 HOH B 49 351 96 HOH HOH . H 4 HOH B 50 352 97 HOH HOH . H 4 HOH B 51 353 98 HOH HOH . H 4 HOH B 52 354 99 HOH HOH . H 4 HOH B 53 355 100 HOH HOH . H 4 HOH B 54 356 102 HOH HOH . H 4 HOH B 55 357 103 HOH HOH . H 4 HOH B 56 358 105 HOH HOH . H 4 HOH B 57 359 107 HOH HOH . H 4 HOH B 58 360 109 HOH HOH . H 4 HOH B 59 361 110 HOH HOH . H 4 HOH B 60 362 113 HOH HOH . H 4 HOH B 61 363 114 HOH HOH . H 4 HOH B 62 364 116 HOH HOH . H 4 HOH B 63 365 119 HOH HOH . H 4 HOH B 64 366 123 HOH HOH . H 4 HOH B 65 367 124 HOH HOH . H 4 HOH B 66 368 125 HOH HOH . H 4 HOH B 67 369 126 HOH HOH . H 4 HOH B 68 370 127 HOH HOH . H 4 HOH B 69 371 130 HOH HOH . H 4 HOH B 70 372 131 HOH HOH . H 4 HOH B 71 373 132 HOH HOH . H 4 HOH B 72 374 133 HOH HOH . H 4 HOH B 73 375 138 HOH HOH . H 4 HOH B 74 376 141 HOH HOH . H 4 HOH B 75 377 142 HOH HOH . H 4 HOH B 76 378 144 HOH HOH . H 4 HOH B 77 379 145 HOH HOH . H 4 HOH B 78 380 148 HOH HOH . H 4 HOH B 79 381 151 HOH HOH . H 4 HOH B 80 382 155 HOH HOH . H 4 HOH B 81 383 159 HOH HOH . H 4 HOH B 82 384 160 HOH HOH . H 4 HOH B 83 385 161 HOH HOH . H 4 HOH B 84 386 166 HOH HOH . H 4 HOH B 85 387 168 HOH HOH . H 4 HOH B 86 388 171 HOH HOH . H 4 HOH B 87 389 174 HOH HOH . H 4 HOH B 88 390 177 HOH HOH . H 4 HOH B 89 391 178 HOH HOH . H 4 HOH B 90 392 180 HOH HOH . H 4 HOH B 91 393 182 HOH HOH . H 4 HOH B 92 394 183 HOH HOH . H 4 HOH B 93 395 185 HOH HOH . H 4 HOH B 94 396 189 HOH HOH . H 4 HOH B 95 397 192 HOH HOH . H 4 HOH B 96 398 196 HOH HOH . H 4 HOH B 97 399 198 HOH HOH . H 4 HOH B 98 400 199 HOH HOH . H 4 HOH B 99 401 200 HOH HOH . H 4 HOH B 100 402 210 HOH HOH . H 4 HOH B 101 403 212 HOH HOH . H 4 HOH B 102 404 213 HOH HOH . H 4 HOH B 103 405 214 HOH HOH . H 4 HOH B 104 406 215 HOH HOH . H 4 HOH B 105 407 216 HOH HOH . H 4 HOH B 106 408 219 HOH HOH . H 4 HOH B 107 409 220 HOH HOH . H 4 HOH B 108 410 223 HOH HOH . H 4 HOH B 109 411 225 HOH HOH . H 4 HOH B 110 412 227 HOH HOH . H 4 HOH B 111 413 229 HOH HOH . H 4 HOH B 112 414 231 HOH HOH . H 4 HOH B 113 415 232 HOH HOH . H 4 HOH B 114 416 233 HOH HOH . H 4 HOH B 115 417 235 HOH HOH . H 4 HOH B 116 418 237 HOH HOH . H 4 HOH B 117 419 238 HOH HOH . H 4 HOH B 118 420 242 HOH HOH . H 4 HOH B 119 421 245 HOH HOH . H 4 HOH B 120 422 253 HOH HOH . H 4 HOH B 121 423 254 HOH HOH . H 4 HOH B 122 424 255 HOH HOH . H 4 HOH B 123 425 258 HOH HOH . H 4 HOH B 124 426 260 HOH HOH . H 4 HOH B 125 427 263 HOH HOH . H 4 HOH B 126 428 264 HOH HOH . H 4 HOH B 127 429 268 HOH HOH . H 4 HOH B 128 430 269 HOH HOH . H 4 HOH B 129 431 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GEO . . . F 3 33.523 95.948 95.943 1 18.62 ? O5' GEO 302 B 1 HETATM 2 C C5' GEO . . . F 3 34.396 95.898 97.086 1 16.61 ? C5' GEO 302 B 1 HETATM 3 C C4' GEO . . . F 3 35.827 95.603 96.68 1 15.7 ? C4' GEO 302 B 1 HETATM 4 O O4' GEO . . . F 3 35.961 94.202 96.307 1 14.81 ? O4' GEO 302 B 1 HETATM 5 C C1' GEO . . . F 3 36.675 94.142 95.094 1 13.86 ? C1' GEO 302 B 1 HETATM 6 N N1 GEO . . . F 3 36.217 92.978 94.353 1 12.92 ? N1 GEO 302 B 1 HETATM 7 C C6 GEO . . . F 3 34.999 92.577 94.331 1 14.52 ? C6 GEO 302 B 1 HETATM 8 C C5 GEO . . . F 3 34.718 91.42 93.815 1 15.87 ? C5 GEO 302 B 1 HETATM 9 C C4 GEO . . . F 3 35.6 90.665 93.262 1 13.35 ? C4 GEO 302 B 1 HETATM 10 N N3 GEO . . . F 3 36.858 91.063 93.216 1 12.88 ? N3 GEO 302 B 1 HETATM 11 C C2 GEO . . . F 3 37.182 92.236 93.772 1 13.71 ? C2 GEO 302 B 1 HETATM 12 O O2 GEO . . . F 3 38.426 92.652 93.738 1 15 ? O2 GEO 302 B 1 HETATM 13 N N4 GEO . . . F 3 35.308 89.445 92.732 1 12.16 ? N4 GEO 302 B 1 HETATM 14 C C2' GEO . . . F 3 36.449 95.471 94.378 1 15.25 ? C2' GEO 302 B 1 HETATM 15 F F1 GEO . . . F 3 35.308 95.453 93.699 1 18.94 ? F1 GEO 302 B 1 HETATM 16 F F2 GEO . . . F 3 37.483 95.764 93.62 1 16.37 ? F2 GEO 302 B 1 HETATM 17 C C3' GEO . . . F 3 36.315 96.457 95.507 1 16.22 ? C3' GEO 302 B 1 HETATM 18 O O3' GEO . . . F 3 37.59 96.997 95.867 1 18.28 ? O3' GEO 302 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #