data_2NO1
#
_model_server_result.job_id            KOCOXXJKqlKAwjIGpNWMuQ 
_model_server_result.datetime_utc      '2024-11-23 04:56:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2no1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2NO1 
#
_exptl.entry_id    2NO1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              227.217 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYCYTIDINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NO1 
_cell.length_a            52.7 
_cell.length_b            132.76 
_cell.length_c            156.85 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NO1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 2 3,4 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 132.76 156.85 
3 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 26.35 -66.38 0 
4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 26.35 199.14 156.85 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C9 H13 N3 O4' 
_chem_comp.formula_weight    227.217 
_chem_comp.id                DCZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYCYTIDINE" 
_chem_comp.type              'dna oh 5 prime terminus' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DCZ sing 127 n n 
N1 C6 DCZ sing 128 n n 
N1 C1' DCZ sing 129 n n 
C2 N3 DCZ sing 130 n n 
C2 O2 DCZ doub 131 n n 
N3 C4 DCZ doub 132 n n 
C4 C5 DCZ sing 133 n n 
C4 N4 DCZ sing 134 n n 
C5 C6 DCZ doub 135 n n 
C5 H5 DCZ sing 136 n n 
C6 H6 DCZ sing 137 n n 
N4 HN41 DCZ sing 138 n n 
N4 HN42 DCZ sing 139 n n 
C1' C2' DCZ sing 140 n n 
C1' O4' DCZ sing 141 n n 
C1' H1' DCZ sing 142 n n 
C2' C3' DCZ sing 143 n n 
C2' "H2'1" DCZ sing 144 n n 
C2' "H2'2" DCZ sing 145 n n 
C3' C4' DCZ sing 146 n n 
C3' O3' DCZ sing 147 n n 
C3' H3' DCZ sing 148 n n 
C4' O4' DCZ sing 149 n n 
C4' C5' DCZ sing 150 n n 
C4' H4' DCZ sing 151 n n 
O3' HO3' DCZ sing 152 n n 
C5' O5' DCZ sing 153 n n 
C5' "H5'1" DCZ sing 154 n n 
C5' "H5'2" DCZ sing 155 n n 
O5' HO51 DCZ sing 156 n n 
#
_atom_sites.entry_id                     2NO1 
_atom_sites.fract_transf_matrix[1][1]    0.018975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007532 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 DCZ A 1 302 302 DCZ DCY . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 DCZ B 1 302 302 DCZ DCY . 
G 4 HOH A 1 303 2 HOH HOH . 
G 4 HOH A 2 304 3 HOH HOH . 
G 4 HOH A 3 305 4 HOH HOH . 
G 4 HOH A 4 306 7 HOH HOH . 
G 4 HOH A 5 307 8 HOH HOH . 
G 4 HOH A 6 308 9 HOH HOH . 
G 4 HOH A 7 309 11 HOH HOH . 
G 4 HOH A 8 310 12 HOH HOH . 
G 4 HOH A 9 311 13 HOH HOH . 
G 4 HOH A 10 312 14 HOH HOH . 
G 4 HOH A 11 313 15 HOH HOH . 
G 4 HOH A 12 314 16 HOH HOH . 
G 4 HOH A 13 315 18 HOH HOH . 
G 4 HOH A 14 316 26 HOH HOH . 
G 4 HOH A 15 317 27 HOH HOH . 
G 4 HOH A 16 318 29 HOH HOH . 
G 4 HOH A 17 319 31 HOH HOH . 
G 4 HOH A 18 320 36 HOH HOH . 
G 4 HOH A 19 321 37 HOH HOH . 
G 4 HOH A 20 322 38 HOH HOH . 
G 4 HOH A 21 323 39 HOH HOH . 
G 4 HOH A 22 324 40 HOH HOH . 
G 4 HOH A 23 325 41 HOH HOH . 
G 4 HOH A 24 326 42 HOH HOH . 
G 4 HOH A 25 327 44 HOH HOH . 
G 4 HOH A 26 328 45 HOH HOH . 
G 4 HOH A 27 329 47 HOH HOH . 
G 4 HOH A 28 330 49 HOH HOH . 
G 4 HOH A 29 331 52 HOH HOH . 
G 4 HOH A 30 332 53 HOH HOH . 
G 4 HOH A 31 333 54 HOH HOH . 
G 4 HOH A 32 334 55 HOH HOH . 
G 4 HOH A 33 335 56 HOH HOH . 
G 4 HOH A 34 336 58 HOH HOH . 
G 4 HOH A 35 337 59 HOH HOH . 
G 4 HOH A 36 338 62 HOH HOH . 
G 4 HOH A 37 339 63 HOH HOH . 
G 4 HOH A 38 340 65 HOH HOH . 
G 4 HOH A 39 341 68 HOH HOH . 
G 4 HOH A 40 342 70 HOH HOH . 
G 4 HOH A 41 343 76 HOH HOH . 
G 4 HOH A 42 344 77 HOH HOH . 
G 4 HOH A 43 345 78 HOH HOH . 
G 4 HOH A 44 346 79 HOH HOH . 
G 4 HOH A 45 347 80 HOH HOH . 
G 4 HOH A 46 348 81 HOH HOH . 
G 4 HOH A 47 349 85 HOH HOH . 
G 4 HOH A 48 350 86 HOH HOH . 
G 4 HOH A 49 351 87 HOH HOH . 
G 4 HOH A 50 352 90 HOH HOH . 
G 4 HOH A 51 353 91 HOH HOH . 
G 4 HOH A 52 354 92 HOH HOH . 
G 4 HOH A 53 355 93 HOH HOH . 
G 4 HOH A 54 356 94 HOH HOH . 
G 4 HOH A 55 357 95 HOH HOH . 
G 4 HOH A 56 358 96 HOH HOH . 
G 4 HOH A 57 359 97 HOH HOH . 
G 4 HOH A 58 360 99 HOH HOH . 
G 4 HOH A 59 361 102 HOH HOH . 
G 4 HOH A 60 362 103 HOH HOH . 
G 4 HOH A 61 363 106 HOH HOH . 
G 4 HOH A 62 364 108 HOH HOH . 
G 4 HOH A 63 365 109 HOH HOH . 
G 4 HOH A 64 366 112 HOH HOH . 
G 4 HOH A 65 367 113 HOH HOH . 
G 4 HOH A 66 368 114 HOH HOH . 
G 4 HOH A 67 369 115 HOH HOH . 
G 4 HOH A 68 370 116 HOH HOH . 
G 4 HOH A 69 371 117 HOH HOH . 
G 4 HOH A 70 372 118 HOH HOH . 
G 4 HOH A 71 373 121 HOH HOH . 
G 4 HOH A 72 374 122 HOH HOH . 
G 4 HOH A 73 375 123 HOH HOH . 
G 4 HOH A 74 376 124 HOH HOH . 
G 4 HOH A 75 377 125 HOH HOH . 
G 4 HOH A 76 378 126 HOH HOH . 
G 4 HOH A 77 379 127 HOH HOH . 
G 4 HOH A 78 380 130 HOH HOH . 
G 4 HOH A 79 381 131 HOH HOH . 
G 4 HOH A 80 382 132 HOH HOH . 
G 4 HOH A 81 383 133 HOH HOH . 
G 4 HOH A 82 384 134 HOH HOH . 
G 4 HOH A 83 385 137 HOH HOH . 
G 4 HOH A 84 386 139 HOH HOH . 
G 4 HOH A 85 387 140 HOH HOH . 
G 4 HOH A 86 388 141 HOH HOH . 
G 4 HOH A 87 389 142 HOH HOH . 
G 4 HOH A 88 390 143 HOH HOH . 
G 4 HOH A 89 391 144 HOH HOH . 
G 4 HOH A 90 392 145 HOH HOH . 
G 4 HOH A 91 393 150 HOH HOH . 
G 4 HOH A 92 394 152 HOH HOH . 
G 4 HOH A 93 395 153 HOH HOH . 
G 4 HOH A 94 396 160 HOH HOH . 
G 4 HOH A 95 397 161 HOH HOH . 
G 4 HOH A 96 398 163 HOH HOH . 
G 4 HOH A 97 399 165 HOH HOH . 
G 4 HOH A 98 400 166 HOH HOH . 
G 4 HOH A 99 401 167 HOH HOH . 
G 4 HOH A 100 402 170 HOH HOH . 
G 4 HOH A 101 403 171 HOH HOH . 
G 4 HOH A 102 404 173 HOH HOH . 
G 4 HOH A 103 405 175 HOH HOH . 
G 4 HOH A 104 406 176 HOH HOH . 
G 4 HOH A 105 407 177 HOH HOH . 
G 4 HOH A 106 408 178 HOH HOH . 
G 4 HOH A 107 409 180 HOH HOH . 
G 4 HOH A 108 410 181 HOH HOH . 
G 4 HOH A 109 411 182 HOH HOH . 
G 4 HOH A 110 412 185 HOH HOH . 
G 4 HOH A 111 413 188 HOH HOH . 
G 4 HOH A 112 414 190 HOH HOH . 
G 4 HOH A 113 415 191 HOH HOH . 
G 4 HOH A 114 416 192 HOH HOH . 
H 4 HOH B 1 303 1 HOH HOH . 
H 4 HOH B 2 304 5 HOH HOH . 
H 4 HOH B 3 305 6 HOH HOH . 
H 4 HOH B 4 306 10 HOH HOH . 
H 4 HOH B 5 307 17 HOH HOH . 
H 4 HOH B 6 308 19 HOH HOH . 
H 4 HOH B 7 309 20 HOH HOH . 
H 4 HOH B 8 310 21 HOH HOH . 
H 4 HOH B 9 311 22 HOH HOH . 
H 4 HOH B 10 312 23 HOH HOH . 
H 4 HOH B 11 313 24 HOH HOH . 
H 4 HOH B 12 314 25 HOH HOH . 
H 4 HOH B 13 315 28 HOH HOH . 
H 4 HOH B 14 316 30 HOH HOH . 
H 4 HOH B 15 317 32 HOH HOH . 
H 4 HOH B 16 318 33 HOH HOH . 
H 4 HOH B 17 319 34 HOH HOH . 
H 4 HOH B 18 320 35 HOH HOH . 
H 4 HOH B 19 321 43 HOH HOH . 
H 4 HOH B 20 322 46 HOH HOH . 
H 4 HOH B 21 323 48 HOH HOH . 
H 4 HOH B 22 324 50 HOH HOH . 
H 4 HOH B 23 325 51 HOH HOH . 
H 4 HOH B 24 326 57 HOH HOH . 
H 4 HOH B 25 327 60 HOH HOH . 
H 4 HOH B 26 328 61 HOH HOH . 
H 4 HOH B 27 329 64 HOH HOH . 
H 4 HOH B 28 330 66 HOH HOH . 
H 4 HOH B 29 331 67 HOH HOH . 
H 4 HOH B 30 332 69 HOH HOH . 
H 4 HOH B 31 333 71 HOH HOH . 
H 4 HOH B 32 334 72 HOH HOH . 
H 4 HOH B 33 335 73 HOH HOH . 
H 4 HOH B 34 336 74 HOH HOH . 
H 4 HOH B 35 337 75 HOH HOH . 
H 4 HOH B 36 338 82 HOH HOH . 
H 4 HOH B 37 339 83 HOH HOH . 
H 4 HOH B 38 340 84 HOH HOH . 
H 4 HOH B 39 341 88 HOH HOH . 
H 4 HOH B 40 342 89 HOH HOH . 
H 4 HOH B 41 343 98 HOH HOH . 
H 4 HOH B 42 344 100 HOH HOH . 
H 4 HOH B 43 345 101 HOH HOH . 
H 4 HOH B 44 346 104 HOH HOH . 
H 4 HOH B 45 347 105 HOH HOH . 
H 4 HOH B 46 348 107 HOH HOH . 
H 4 HOH B 47 349 110 HOH HOH . 
H 4 HOH B 48 350 111 HOH HOH . 
H 4 HOH B 49 351 119 HOH HOH . 
H 4 HOH B 50 352 120 HOH HOH . 
H 4 HOH B 51 353 128 HOH HOH . 
H 4 HOH B 52 354 129 HOH HOH . 
H 4 HOH B 53 355 135 HOH HOH . 
H 4 HOH B 54 356 136 HOH HOH . 
H 4 HOH B 55 357 138 HOH HOH . 
H 4 HOH B 56 358 146 HOH HOH . 
H 4 HOH B 57 359 147 HOH HOH . 
H 4 HOH B 58 360 148 HOH HOH . 
H 4 HOH B 59 361 149 HOH HOH . 
H 4 HOH B 60 362 151 HOH HOH . 
H 4 HOH B 61 363 154 HOH HOH . 
H 4 HOH B 62 364 155 HOH HOH . 
H 4 HOH B 63 365 156 HOH HOH . 
H 4 HOH B 64 366 157 HOH HOH . 
H 4 HOH B 65 367 158 HOH HOH . 
H 4 HOH B 66 368 159 HOH HOH . 
H 4 HOH B 67 369 162 HOH HOH . 
H 4 HOH B 68 370 164 HOH HOH . 
H 4 HOH B 69 371 168 HOH HOH . 
H 4 HOH B 70 372 169 HOH HOH . 
H 4 HOH B 71 373 172 HOH HOH . 
H 4 HOH B 72 374 174 HOH HOH . 
H 4 HOH B 73 375 179 HOH HOH . 
H 4 HOH B 74 376 183 HOH HOH . 
H 4 HOH B 75 377 184 HOH HOH . 
H 4 HOH B 76 378 186 HOH HOH . 
H 4 HOH B 77 379 187 HOH HOH . 
H 4 HOH B 78 380 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCZ . . . D 3 47.712 65.267 100.017 1 14.17 ? N1 DCZ 302 A 1 
HETATM 2 C C2 DCZ . . . D 3 47.816 66.43 100.662 1 12.35 ? C2 DCZ 302 A 1 
HETATM 3 N N3 DCZ . . . D 3 46.725 66.983 101.192 1 13.06 ? N3 DCZ 302 A 1 
HETATM 4 C C4 DCZ . . . D 3 45.561 66.379 101.076 1 12.29 ? C4 DCZ 302 A 1 
HETATM 5 C C5 DCZ . . . D 3 45.496 65.263 100.428 1 13.48 ? C5 DCZ 302 A 1 
HETATM 6 C C6 DCZ . . . D 3 46.548 64.71 99.921 1 10.44 ? C6 DCZ 302 A 1 
HETATM 7 O O2 DCZ . . . D 3 48.961 67.026 100.827 1 12.25 ? O2 DCZ 302 A 1 
HETATM 8 N N4 DCZ . . . D 3 44.517 67.019 101.592 1 12.49 ? N4 DCZ 302 A 1 
HETATM 9 C C1' DCZ . . . D 3 48.93 64.725 99.394 1 13.48 ? C1' DCZ 302 A 1 
HETATM 10 C C2' DCZ . . . D 3 49.613 63.534 100.071 1 10.64 ? C2' DCZ 302 A 1 
HETATM 11 C C3' DCZ . . . D 3 50.09 62.725 98.868 1 14.55 ? C3' DCZ 302 A 1 
HETATM 12 C C4' DCZ . . . D 3 49.128 63.065 97.724 1 15.63 ? C4' DCZ 302 A 1 
HETATM 13 O O4' DCZ . . . D 3 48.564 64.34 98.043 1 17.16 ? O4' DCZ 302 A 1 
HETATM 14 O O3' DCZ . . . D 3 51.372 63.211 98.443 1 13.17 ? O3' DCZ 302 A 1 
HETATM 15 C C5' DCZ . . . D 3 48.038 62.022 97.453 1 17.36 ? C5' DCZ 302 A 1 
HETATM 16 O O5' DCZ . . . D 3 47.466 61.488 98.65 1 14.63 ? O5' DCZ 302 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           16 
#