data_2NO6
#
_model_server_result.job_id            WZQ4PysKwGCC6-MPClII7Q 
_model_server_result.datetime_utc      '2024-11-27 02:08:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2no6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    2NO6 
#
_exptl.entry_id    2NO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NO6 
_cell.length_a            52.79 
_cell.length_b            134.33 
_cell.length_c            154.98 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 2 3,4 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 134.33 154.98 
3 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 26.395 -67.165 0 
4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 26.395 201.495 154.98 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2NO6 
_atom_sites.fract_transf_matrix[1][1]    0.018943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 ETV A 1 302 1 ETV FTC . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 ETV B 1 302 2 ETV FTC . 
G 4 HOH A 1 303 1 HOH HOH . 
G 4 HOH A 2 304 3 HOH HOH . 
G 4 HOH A 3 305 5 HOH HOH . 
G 4 HOH A 4 306 6 HOH HOH . 
G 4 HOH A 5 307 7 HOH HOH . 
G 4 HOH A 6 308 13 HOH HOH . 
G 4 HOH A 7 309 14 HOH HOH . 
G 4 HOH A 8 310 15 HOH HOH . 
G 4 HOH A 9 311 16 HOH HOH . 
G 4 HOH A 10 312 17 HOH HOH . 
G 4 HOH A 11 313 18 HOH HOH . 
G 4 HOH A 12 314 19 HOH HOH . 
G 4 HOH A 13 315 23 HOH HOH . 
G 4 HOH A 14 316 25 HOH HOH . 
G 4 HOH A 15 317 26 HOH HOH . 
G 4 HOH A 16 318 28 HOH HOH . 
G 4 HOH A 17 319 29 HOH HOH . 
G 4 HOH A 18 320 30 HOH HOH . 
G 4 HOH A 19 321 31 HOH HOH . 
G 4 HOH A 20 322 32 HOH HOH . 
G 4 HOH A 21 323 33 HOH HOH . 
G 4 HOH A 22 324 36 HOH HOH . 
G 4 HOH A 23 325 37 HOH HOH . 
G 4 HOH A 24 326 38 HOH HOH . 
G 4 HOH A 25 327 40 HOH HOH . 
G 4 HOH A 26 328 41 HOH HOH . 
G 4 HOH A 27 329 44 HOH HOH . 
G 4 HOH A 28 330 45 HOH HOH . 
G 4 HOH A 29 331 46 HOH HOH . 
G 4 HOH A 30 332 47 HOH HOH . 
G 4 HOH A 31 333 51 HOH HOH . 
G 4 HOH A 32 334 53 HOH HOH . 
G 4 HOH A 33 335 54 HOH HOH . 
G 4 HOH A 34 336 55 HOH HOH . 
G 4 HOH A 35 337 56 HOH HOH . 
G 4 HOH A 36 338 57 HOH HOH . 
G 4 HOH A 37 339 59 HOH HOH . 
G 4 HOH A 38 340 60 HOH HOH . 
G 4 HOH A 39 341 61 HOH HOH . 
G 4 HOH A 40 342 63 HOH HOH . 
G 4 HOH A 41 343 64 HOH HOH . 
G 4 HOH A 42 344 67 HOH HOH . 
G 4 HOH A 43 345 71 HOH HOH . 
G 4 HOH A 44 346 73 HOH HOH . 
G 4 HOH A 45 347 75 HOH HOH . 
G 4 HOH A 46 348 76 HOH HOH . 
G 4 HOH A 47 349 78 HOH HOH . 
G 4 HOH A 48 350 81 HOH HOH . 
G 4 HOH A 49 351 82 HOH HOH . 
G 4 HOH A 50 352 83 HOH HOH . 
G 4 HOH A 51 353 86 HOH HOH . 
G 4 HOH A 52 354 87 HOH HOH . 
G 4 HOH A 53 355 90 HOH HOH . 
G 4 HOH A 54 356 92 HOH HOH . 
G 4 HOH A 55 357 96 HOH HOH . 
G 4 HOH A 56 358 100 HOH HOH . 
G 4 HOH A 57 359 101 HOH HOH . 
G 4 HOH A 58 360 102 HOH HOH . 
G 4 HOH A 59 361 103 HOH HOH . 
G 4 HOH A 60 362 104 HOH HOH . 
G 4 HOH A 61 363 105 HOH HOH . 
G 4 HOH A 62 364 106 HOH HOH . 
G 4 HOH A 63 365 108 HOH HOH . 
G 4 HOH A 64 366 109 HOH HOH . 
G 4 HOH A 65 367 111 HOH HOH . 
G 4 HOH A 66 368 116 HOH HOH . 
G 4 HOH A 67 369 117 HOH HOH . 
G 4 HOH A 68 370 118 HOH HOH . 
G 4 HOH A 69 371 119 HOH HOH . 
G 4 HOH A 70 372 120 HOH HOH . 
G 4 HOH A 71 373 121 HOH HOH . 
G 4 HOH A 72 374 124 HOH HOH . 
G 4 HOH A 73 375 126 HOH HOH . 
G 4 HOH A 74 376 132 HOH HOH . 
G 4 HOH A 75 377 133 HOH HOH . 
G 4 HOH A 76 378 134 HOH HOH . 
G 4 HOH A 77 379 135 HOH HOH . 
G 4 HOH A 78 380 136 HOH HOH . 
G 4 HOH A 79 381 137 HOH HOH . 
G 4 HOH A 80 382 138 HOH HOH . 
G 4 HOH A 81 383 139 HOH HOH . 
G 4 HOH A 82 384 141 HOH HOH . 
G 4 HOH A 83 385 142 HOH HOH . 
G 4 HOH A 84 386 143 HOH HOH . 
G 4 HOH A 85 387 144 HOH HOH . 
G 4 HOH A 86 388 146 HOH HOH . 
G 4 HOH A 87 389 147 HOH HOH . 
G 4 HOH A 88 390 148 HOH HOH . 
G 4 HOH A 89 391 149 HOH HOH . 
G 4 HOH A 90 392 150 HOH HOH . 
G 4 HOH A 91 393 151 HOH HOH . 
G 4 HOH A 92 394 152 HOH HOH . 
G 4 HOH A 93 395 153 HOH HOH . 
G 4 HOH A 94 396 155 HOH HOH . 
G 4 HOH A 95 397 158 HOH HOH . 
G 4 HOH A 96 398 159 HOH HOH . 
G 4 HOH A 97 399 162 HOH HOH . 
G 4 HOH A 98 400 163 HOH HOH . 
G 4 HOH A 99 401 165 HOH HOH . 
G 4 HOH A 100 402 166 HOH HOH . 
G 4 HOH A 101 403 167 HOH HOH . 
G 4 HOH A 102 404 168 HOH HOH . 
G 4 HOH A 103 405 169 HOH HOH . 
G 4 HOH A 104 406 170 HOH HOH . 
G 4 HOH A 105 407 172 HOH HOH . 
G 4 HOH A 106 408 174 HOH HOH . 
G 4 HOH A 107 409 175 HOH HOH . 
H 4 HOH B 1 303 2 HOH HOH . 
H 4 HOH B 2 304 4 HOH HOH . 
H 4 HOH B 3 305 8 HOH HOH . 
H 4 HOH B 4 306 9 HOH HOH . 
H 4 HOH B 5 307 10 HOH HOH . 
H 4 HOH B 6 308 11 HOH HOH . 
H 4 HOH B 7 309 12 HOH HOH . 
H 4 HOH B 8 310 20 HOH HOH . 
H 4 HOH B 9 311 21 HOH HOH . 
H 4 HOH B 10 312 22 HOH HOH . 
H 4 HOH B 11 313 24 HOH HOH . 
H 4 HOH B 12 314 27 HOH HOH . 
H 4 HOH B 13 315 34 HOH HOH . 
H 4 HOH B 14 316 35 HOH HOH . 
H 4 HOH B 15 317 39 HOH HOH . 
H 4 HOH B 16 318 42 HOH HOH . 
H 4 HOH B 17 319 43 HOH HOH . 
H 4 HOH B 18 320 48 HOH HOH . 
H 4 HOH B 19 321 49 HOH HOH . 
H 4 HOH B 20 322 50 HOH HOH . 
H 4 HOH B 21 323 52 HOH HOH . 
H 4 HOH B 22 324 58 HOH HOH . 
H 4 HOH B 23 325 62 HOH HOH . 
H 4 HOH B 24 326 65 HOH HOH . 
H 4 HOH B 25 327 66 HOH HOH . 
H 4 HOH B 26 328 68 HOH HOH . 
H 4 HOH B 27 329 69 HOH HOH . 
H 4 HOH B 28 330 70 HOH HOH . 
H 4 HOH B 29 331 72 HOH HOH . 
H 4 HOH B 30 332 74 HOH HOH . 
H 4 HOH B 31 333 77 HOH HOH . 
H 4 HOH B 32 334 79 HOH HOH . 
H 4 HOH B 33 335 80 HOH HOH . 
H 4 HOH B 34 336 84 HOH HOH . 
H 4 HOH B 35 337 85 HOH HOH . 
H 4 HOH B 36 338 88 HOH HOH . 
H 4 HOH B 37 339 89 HOH HOH . 
H 4 HOH B 38 340 91 HOH HOH . 
H 4 HOH B 39 341 93 HOH HOH . 
H 4 HOH B 40 342 94 HOH HOH . 
H 4 HOH B 41 343 95 HOH HOH . 
H 4 HOH B 42 344 97 HOH HOH . 
H 4 HOH B 43 345 98 HOH HOH . 
H 4 HOH B 44 346 99 HOH HOH . 
H 4 HOH B 45 347 107 HOH HOH . 
H 4 HOH B 46 348 110 HOH HOH . 
H 4 HOH B 47 349 112 HOH HOH . 
H 4 HOH B 48 350 113 HOH HOH . 
H 4 HOH B 49 351 114 HOH HOH . 
H 4 HOH B 50 352 115 HOH HOH . 
H 4 HOH B 51 353 122 HOH HOH . 
H 4 HOH B 52 354 123 HOH HOH . 
H 4 HOH B 53 355 125 HOH HOH . 
H 4 HOH B 54 356 127 HOH HOH . 
H 4 HOH B 55 357 128 HOH HOH . 
H 4 HOH B 56 358 129 HOH HOH . 
H 4 HOH B 57 359 130 HOH HOH . 
H 4 HOH B 58 360 131 HOH HOH . 
H 4 HOH B 59 361 140 HOH HOH . 
H 4 HOH B 60 362 145 HOH HOH . 
H 4 HOH B 61 363 154 HOH HOH . 
H 4 HOH B 62 364 156 HOH HOH . 
H 4 HOH B 63 365 157 HOH HOH . 
H 4 HOH B 64 366 160 HOH HOH . 
H 4 HOH B 65 367 161 HOH HOH . 
H 4 HOH B 66 368 164 HOH HOH . 
H 4 HOH B 67 369 171 HOH HOH . 
H 4 HOH B 68 370 173 HOH HOH . 
H 4 HOH B 69 371 176 HOH HOH . 
H 4 HOH B 70 372 177 HOH HOH . 
H 4 HOH B 71 373 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 2 29.742 102.37 93.747 1 23.67 ? PB ADP 301 B 1 
HETATM 2 O O1B ADP . . . E 2 31.167 101.977 93.966 1 22.49 ? O1B ADP 301 B 1 
HETATM 3 O O2B ADP . . . E 2 28.664 101.794 94.602 1 20.56 ? O2B ADP 301 B 1 
HETATM 4 O O3B ADP . . . E 2 29.423 102.346 92.271 1 21.26 ? O3B ADP 301 B 1 
HETATM 5 P PA ADP . . . E 2 29.086 104.799 95.234 1 24.69 ? PA ADP 301 B 1 
HETATM 6 O O1A ADP . . . E 2 27.571 104.664 95.128 1 22.37 ? O1A ADP 301 B 1 
HETATM 7 O O2A ADP . . . E 2 29.699 104.426 96.539 1 25.1 ? O2A ADP 301 B 1 
HETATM 8 O O3A ADP . . . E 2 29.773 103.961 94.043 1 25.47 ? O3A ADP 301 B 1 
HETATM 9 O O5' ADP . . . E 2 29.503 106.251 94.77 1 21.74 ? O5' ADP 301 B 1 
HETATM 10 C C5' ADP . . . E 2 30.845 106.745 94.723 1 23.26 ? C5' ADP 301 B 1 
HETATM 11 C C4' ADP . . . E 2 30.882 108.145 95.381 1 27.73 ? C4' ADP 301 B 1 
HETATM 12 O O4' ADP . . . E 2 30.321 109.141 94.508 1 27.99 ? O4' ADP 301 B 1 
HETATM 13 C C3' ADP . . . E 2 30.113 108.294 96.702 1 25.95 ? C3' ADP 301 B 1 
HETATM 14 O O3' ADP . . . E 2 30.799 109.262 97.511 1 22.01 ? O3' ADP 301 B 1 
HETATM 15 C C2' ADP . . . E 2 28.779 108.918 96.293 1 27.73 ? C2' ADP 301 B 1 
HETATM 16 O O2' ADP . . . E 2 28.093 109.753 97.261 1 27.41 ? O2' ADP 301 B 1 
HETATM 17 C C1' ADP . . . E 2 29.167 109.769 95.081 1 27.15 ? C1' ADP 301 B 1 
HETATM 18 N N9 ADP . . . E 2 28.189 109.766 93.975 1 26.53 ? N9 ADP 301 B 1 
HETATM 19 C C8 ADP . . . E 2 27.627 108.679 93.372 1 25.06 ? C8 ADP 301 B 1 
HETATM 20 N N7 ADP . . . E 2 26.836 109.068 92.345 1 24.89 ? N7 ADP 301 B 1 
HETATM 21 C C5 ADP . . . E 2 26.9 110.408 92.281 1 25.48 ? C5 ADP 301 B 1 
HETATM 22 C C6 ADP . . . E 2 26.281 111.405 91.402 1 27.77 ? C6 ADP 301 B 1 
HETATM 23 N N6 ADP . . . E 2 25.508 111.059 90.457 1 27.77 ? N6 ADP 301 B 1 
HETATM 24 N N1 ADP . . . E 2 26.582 112.672 91.628 1 27.43 ? N1 ADP 301 B 1 
HETATM 25 C C2 ADP . . . E 2 27.47 113.167 92.675 1 25.21 ? C2 ADP 301 B 1 
HETATM 26 N N3 ADP . . . E 2 28.046 112.136 93.502 1 27.11 ? N3 ADP 301 B 1 
HETATM 27 C C4 ADP . . . E 2 27.756 110.814 93.271 1 27.96 ? C4 ADP 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#