data_2NO6
#
_model_server_result.job_id            HYyYPlaYO7-33IbGKN1x8g 
_model_server_result.datetime_utc      '2024-11-02 03:31:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2no6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    2NO6 
#
_exptl.entry_id    2NO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-AMINO-5-FLUORO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NO6 
_cell.length_a            52.79 
_cell.length_b            134.33 
_cell.length_c            154.98 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 2 3,4 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 134.33 154.98 
3 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 26.395 -67.165 0 
4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 26.395 201.495 154.98 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C8 H10 F N3 O3 S' 
_chem_comp.formula_weight    247.247 
_chem_comp.id                ETV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-AMINO-5-FLUORO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "5-FLUORO-(-)-L-2',3'-DIDEOXY-3'-THIACYTIDINE;(-)-BETA-2',3'-DIDEOXY-5-FLUORO-3'-THIACYTIDINE;EMTRICITABINE;EMTRIVA" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C9 ETV doub 127 n n 
C9 N5 ETV sing 128 n y 
C9 N4 ETV sing 129 n y 
N5 C10 ETV doub 130 n y 
C10 N6 ETV sing 131 n n 
C10 C11 ETV sing 132 n y 
N6 HN61 ETV sing 133 n n 
N6 HN62 ETV sing 134 n n 
C11 F2 ETV sing 135 n n 
C11 C12 ETV doub 136 n y 
C12 N4 ETV sing 137 n y 
C12 H12 ETV sing 138 n n 
N4 C13 ETV sing 139 n n 
C13 O5 ETV sing 140 n n 
C13 C14 ETV sing 141 n n 
C13 H13 ETV sing 142 n n 
O5 C15 ETV sing 143 n n 
C15 C16 ETV sing 144 n n 
C15 S2 ETV sing 145 n n 
C15 H15 ETV sing 146 n n 
C16 O6 ETV sing 147 n n 
C16 H161 ETV sing 148 n n 
C16 H162 ETV sing 149 n n 
O6 HO6 ETV sing 150 n n 
S2 C14 ETV sing 151 n n 
C14 H141 ETV sing 152 n n 
C14 H142 ETV sing 153 n n 
#
_atom_sites.entry_id                     2NO6 
_atom_sites.fract_transf_matrix[1][1]    0.018943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 ETV A 1 302 1 ETV FTC . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 ETV B 1 302 2 ETV FTC . 
G 4 HOH A 1 303 1 HOH HOH . 
G 4 HOH A 2 304 3 HOH HOH . 
G 4 HOH A 3 305 5 HOH HOH . 
G 4 HOH A 4 306 6 HOH HOH . 
G 4 HOH A 5 307 7 HOH HOH . 
G 4 HOH A 6 308 13 HOH HOH . 
G 4 HOH A 7 309 14 HOH HOH . 
G 4 HOH A 8 310 15 HOH HOH . 
G 4 HOH A 9 311 16 HOH HOH . 
G 4 HOH A 10 312 17 HOH HOH . 
G 4 HOH A 11 313 18 HOH HOH . 
G 4 HOH A 12 314 19 HOH HOH . 
G 4 HOH A 13 315 23 HOH HOH . 
G 4 HOH A 14 316 25 HOH HOH . 
G 4 HOH A 15 317 26 HOH HOH . 
G 4 HOH A 16 318 28 HOH HOH . 
G 4 HOH A 17 319 29 HOH HOH . 
G 4 HOH A 18 320 30 HOH HOH . 
G 4 HOH A 19 321 31 HOH HOH . 
G 4 HOH A 20 322 32 HOH HOH . 
G 4 HOH A 21 323 33 HOH HOH . 
G 4 HOH A 22 324 36 HOH HOH . 
G 4 HOH A 23 325 37 HOH HOH . 
G 4 HOH A 24 326 38 HOH HOH . 
G 4 HOH A 25 327 40 HOH HOH . 
G 4 HOH A 26 328 41 HOH HOH . 
G 4 HOH A 27 329 44 HOH HOH . 
G 4 HOH A 28 330 45 HOH HOH . 
G 4 HOH A 29 331 46 HOH HOH . 
G 4 HOH A 30 332 47 HOH HOH . 
G 4 HOH A 31 333 51 HOH HOH . 
G 4 HOH A 32 334 53 HOH HOH . 
G 4 HOH A 33 335 54 HOH HOH . 
G 4 HOH A 34 336 55 HOH HOH . 
G 4 HOH A 35 337 56 HOH HOH . 
G 4 HOH A 36 338 57 HOH HOH . 
G 4 HOH A 37 339 59 HOH HOH . 
G 4 HOH A 38 340 60 HOH HOH . 
G 4 HOH A 39 341 61 HOH HOH . 
G 4 HOH A 40 342 63 HOH HOH . 
G 4 HOH A 41 343 64 HOH HOH . 
G 4 HOH A 42 344 67 HOH HOH . 
G 4 HOH A 43 345 71 HOH HOH . 
G 4 HOH A 44 346 73 HOH HOH . 
G 4 HOH A 45 347 75 HOH HOH . 
G 4 HOH A 46 348 76 HOH HOH . 
G 4 HOH A 47 349 78 HOH HOH . 
G 4 HOH A 48 350 81 HOH HOH . 
G 4 HOH A 49 351 82 HOH HOH . 
G 4 HOH A 50 352 83 HOH HOH . 
G 4 HOH A 51 353 86 HOH HOH . 
G 4 HOH A 52 354 87 HOH HOH . 
G 4 HOH A 53 355 90 HOH HOH . 
G 4 HOH A 54 356 92 HOH HOH . 
G 4 HOH A 55 357 96 HOH HOH . 
G 4 HOH A 56 358 100 HOH HOH . 
G 4 HOH A 57 359 101 HOH HOH . 
G 4 HOH A 58 360 102 HOH HOH . 
G 4 HOH A 59 361 103 HOH HOH . 
G 4 HOH A 60 362 104 HOH HOH . 
G 4 HOH A 61 363 105 HOH HOH . 
G 4 HOH A 62 364 106 HOH HOH . 
G 4 HOH A 63 365 108 HOH HOH . 
G 4 HOH A 64 366 109 HOH HOH . 
G 4 HOH A 65 367 111 HOH HOH . 
G 4 HOH A 66 368 116 HOH HOH . 
G 4 HOH A 67 369 117 HOH HOH . 
G 4 HOH A 68 370 118 HOH HOH . 
G 4 HOH A 69 371 119 HOH HOH . 
G 4 HOH A 70 372 120 HOH HOH . 
G 4 HOH A 71 373 121 HOH HOH . 
G 4 HOH A 72 374 124 HOH HOH . 
G 4 HOH A 73 375 126 HOH HOH . 
G 4 HOH A 74 376 132 HOH HOH . 
G 4 HOH A 75 377 133 HOH HOH . 
G 4 HOH A 76 378 134 HOH HOH . 
G 4 HOH A 77 379 135 HOH HOH . 
G 4 HOH A 78 380 136 HOH HOH . 
G 4 HOH A 79 381 137 HOH HOH . 
G 4 HOH A 80 382 138 HOH HOH . 
G 4 HOH A 81 383 139 HOH HOH . 
G 4 HOH A 82 384 141 HOH HOH . 
G 4 HOH A 83 385 142 HOH HOH . 
G 4 HOH A 84 386 143 HOH HOH . 
G 4 HOH A 85 387 144 HOH HOH . 
G 4 HOH A 86 388 146 HOH HOH . 
G 4 HOH A 87 389 147 HOH HOH . 
G 4 HOH A 88 390 148 HOH HOH . 
G 4 HOH A 89 391 149 HOH HOH . 
G 4 HOH A 90 392 150 HOH HOH . 
G 4 HOH A 91 393 151 HOH HOH . 
G 4 HOH A 92 394 152 HOH HOH . 
G 4 HOH A 93 395 153 HOH HOH . 
G 4 HOH A 94 396 155 HOH HOH . 
G 4 HOH A 95 397 158 HOH HOH . 
G 4 HOH A 96 398 159 HOH HOH . 
G 4 HOH A 97 399 162 HOH HOH . 
G 4 HOH A 98 400 163 HOH HOH . 
G 4 HOH A 99 401 165 HOH HOH . 
G 4 HOH A 100 402 166 HOH HOH . 
G 4 HOH A 101 403 167 HOH HOH . 
G 4 HOH A 102 404 168 HOH HOH . 
G 4 HOH A 103 405 169 HOH HOH . 
G 4 HOH A 104 406 170 HOH HOH . 
G 4 HOH A 105 407 172 HOH HOH . 
G 4 HOH A 106 408 174 HOH HOH . 
G 4 HOH A 107 409 175 HOH HOH . 
H 4 HOH B 1 303 2 HOH HOH . 
H 4 HOH B 2 304 4 HOH HOH . 
H 4 HOH B 3 305 8 HOH HOH . 
H 4 HOH B 4 306 9 HOH HOH . 
H 4 HOH B 5 307 10 HOH HOH . 
H 4 HOH B 6 308 11 HOH HOH . 
H 4 HOH B 7 309 12 HOH HOH . 
H 4 HOH B 8 310 20 HOH HOH . 
H 4 HOH B 9 311 21 HOH HOH . 
H 4 HOH B 10 312 22 HOH HOH . 
H 4 HOH B 11 313 24 HOH HOH . 
H 4 HOH B 12 314 27 HOH HOH . 
H 4 HOH B 13 315 34 HOH HOH . 
H 4 HOH B 14 316 35 HOH HOH . 
H 4 HOH B 15 317 39 HOH HOH . 
H 4 HOH B 16 318 42 HOH HOH . 
H 4 HOH B 17 319 43 HOH HOH . 
H 4 HOH B 18 320 48 HOH HOH . 
H 4 HOH B 19 321 49 HOH HOH . 
H 4 HOH B 20 322 50 HOH HOH . 
H 4 HOH B 21 323 52 HOH HOH . 
H 4 HOH B 22 324 58 HOH HOH . 
H 4 HOH B 23 325 62 HOH HOH . 
H 4 HOH B 24 326 65 HOH HOH . 
H 4 HOH B 25 327 66 HOH HOH . 
H 4 HOH B 26 328 68 HOH HOH . 
H 4 HOH B 27 329 69 HOH HOH . 
H 4 HOH B 28 330 70 HOH HOH . 
H 4 HOH B 29 331 72 HOH HOH . 
H 4 HOH B 30 332 74 HOH HOH . 
H 4 HOH B 31 333 77 HOH HOH . 
H 4 HOH B 32 334 79 HOH HOH . 
H 4 HOH B 33 335 80 HOH HOH . 
H 4 HOH B 34 336 84 HOH HOH . 
H 4 HOH B 35 337 85 HOH HOH . 
H 4 HOH B 36 338 88 HOH HOH . 
H 4 HOH B 37 339 89 HOH HOH . 
H 4 HOH B 38 340 91 HOH HOH . 
H 4 HOH B 39 341 93 HOH HOH . 
H 4 HOH B 40 342 94 HOH HOH . 
H 4 HOH B 41 343 95 HOH HOH . 
H 4 HOH B 42 344 97 HOH HOH . 
H 4 HOH B 43 345 98 HOH HOH . 
H 4 HOH B 44 346 99 HOH HOH . 
H 4 HOH B 45 347 107 HOH HOH . 
H 4 HOH B 46 348 110 HOH HOH . 
H 4 HOH B 47 349 112 HOH HOH . 
H 4 HOH B 48 350 113 HOH HOH . 
H 4 HOH B 49 351 114 HOH HOH . 
H 4 HOH B 50 352 115 HOH HOH . 
H 4 HOH B 51 353 122 HOH HOH . 
H 4 HOH B 52 354 123 HOH HOH . 
H 4 HOH B 53 355 125 HOH HOH . 
H 4 HOH B 54 356 127 HOH HOH . 
H 4 HOH B 55 357 128 HOH HOH . 
H 4 HOH B 56 358 129 HOH HOH . 
H 4 HOH B 57 359 130 HOH HOH . 
H 4 HOH B 58 360 131 HOH HOH . 
H 4 HOH B 59 361 140 HOH HOH . 
H 4 HOH B 60 362 145 HOH HOH . 
H 4 HOH B 61 363 154 HOH HOH . 
H 4 HOH B 62 364 156 HOH HOH . 
H 4 HOH B 63 365 157 HOH HOH . 
H 4 HOH B 64 366 160 HOH HOH . 
H 4 HOH B 65 367 161 HOH HOH . 
H 4 HOH B 66 368 164 HOH HOH . 
H 4 HOH B 67 369 171 HOH HOH . 
H 4 HOH B 68 370 173 HOH HOH . 
H 4 HOH B 69 371 176 HOH HOH . 
H 4 HOH B 70 372 177 HOH HOH . 
H 4 HOH B 71 373 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 ETV . . . F 3 38.912 93.856 92.191 1 28.73 ? O4 ETV 302 B 1 
HETATM 2 C C9 ETV . . . F 3 37.714 93.54 92.192 1 28.26 ? C9 ETV 302 B 1 
HETATM 3 N N5 ETV . . . F 3 37.246 92.268 91.918 1 27.66 ? N5 ETV 302 B 1 
HETATM 4 C C10 ETV . . . F 3 35.955 91.999 91.93 1 27.32 ? C10 ETV 302 B 1 
HETATM 5 N N6 ETV . . . F 3 35.549 90.772 91.663 1 26.08 ? N6 ETV 302 B 1 
HETATM 6 C C11 ETV . . . F 3 35.012 93.046 92.216 1 27.82 ? C11 ETV 302 B 1 
HETATM 7 F F2 ETV . . . F 3 33.681 92.735 92.214 1 27.43 ? F2 ETV 302 B 1 
HETATM 8 C C12 ETV . . . F 3 35.435 94.294 92.5 1 25.35 ? C12 ETV 302 B 1 
HETATM 9 N N4 ETV . . . F 3 36.799 94.538 92.491 1 28.16 ? N4 ETV 302 B 1 
HETATM 10 C C13 ETV . . . F 3 37.352 95.899 92.765 1 27.72 ? C13 ETV 302 B 1 
HETATM 11 O O5 ETV . . . F 3 36.232 96.752 92.873 1 28.22 ? O5 ETV 302 B 1 
HETATM 12 C C15 ETV . . . F 3 36.091 97.401 94.136 1 28.5 ? C15 ETV 302 B 1 
HETATM 13 C C16 ETV . . . F 3 34.623 97.566 94.509 1 28.81 ? C16 ETV 302 B 1 
HETATM 14 O O6 ETV . . . F 3 34.079 98.491 93.602 1 29.35 ? O6 ETV 302 B 1 
HETATM 15 S S2 ETV . . . F 3 36.962 96.322 95.283 1 33.61 ? S2 ETV 302 B 1 
HETATM 16 C C14 ETV . . . F 3 38.205 95.968 94.03 1 29.82 ? C14 ETV 302 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           16 
#