data_2NOA
#
_model_server_result.job_id            O7eck_bVwhrr4NrkM-b56A 
_model_server_result.datetime_utc      '2024-10-13 00:19:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2noa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2NOA 
#
_exptl.entry_id    2NOA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.256 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-AMINO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NOA 
_cell.length_a            52.64 
_cell.length_b            134.24 
_cell.length_c            154.86 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NOA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 2 3,4 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 134.24 154.86 
3 'crystal symmetry operation' 5_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 26.32 -67.12 0 
4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 26.32 201.36 154.86 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C8 H11 N3 O3 S' 
_chem_comp.formula_weight    229.256 
_chem_comp.id                3TC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-AMINO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "(-)-L-2',3'-DIDEOXY-3'-THIACYTIDINE;LAMIVUDINE;EPIVIR" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 3TC doub 1 n n 
C1 N2 3TC sing 2 n y 
C1 N1 3TC sing 3 n y 
N2 C3 3TC doub 4 n y 
C3 N3 3TC sing 5 n n 
C3 C5 3TC sing 6 n y 
N3 HN31 3TC sing 7 n n 
N3 HN32 3TC sing 8 n n 
C5 C7 3TC doub 9 n y 
C5 H5 3TC sing 10 n n 
C7 N1 3TC sing 11 n y 
C7 H7 3TC sing 12 n n 
N1 C4 3TC sing 13 n n 
C4 O2 3TC sing 14 n n 
C4 C6 3TC sing 15 n n 
C4 H4 3TC sing 16 n n 
C6 S1 3TC sing 17 n n 
C6 H61 3TC sing 18 n n 
C6 H62 3TC sing 19 n n 
O2 C2 3TC sing 20 n n 
C2 C8 3TC sing 21 n n 
C2 S1 3TC sing 22 n n 
C2 H2 3TC sing 23 n n 
C8 O3 3TC sing 24 n n 
C8 H81 3TC sing 25 n n 
C8 H82 3TC sing 26 n n 
O3 HO3 3TC sing 27 n n 
#
_atom_sites.entry_id                     2NOA 
_atom_sites.fract_transf_matrix[1][1]    0.018997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 301 301 ADP ADP . 
D 3 3TC A 1 302 1 3TC 3TC . 
E 2 ADP B 1 301 301 ADP ADP . 
F 3 3TC B 1 302 2 3TC 3TC . 
G 4 HOH A 1 303 1 HOH HOH . 
G 4 HOH A 2 304 4 HOH HOH . 
G 4 HOH A 3 305 5 HOH HOH . 
G 4 HOH A 4 306 6 HOH HOH . 
G 4 HOH A 5 307 9 HOH HOH . 
G 4 HOH A 6 308 11 HOH HOH . 
G 4 HOH A 7 309 12 HOH HOH . 
G 4 HOH A 8 310 14 HOH HOH . 
G 4 HOH A 9 311 15 HOH HOH . 
G 4 HOH A 10 312 16 HOH HOH . 
G 4 HOH A 11 313 17 HOH HOH . 
G 4 HOH A 12 314 18 HOH HOH . 
G 4 HOH A 13 315 19 HOH HOH . 
G 4 HOH A 14 316 22 HOH HOH . 
G 4 HOH A 15 317 23 HOH HOH . 
G 4 HOH A 16 318 24 HOH HOH . 
G 4 HOH A 17 319 26 HOH HOH . 
G 4 HOH A 18 320 29 HOH HOH . 
G 4 HOH A 19 321 30 HOH HOH . 
G 4 HOH A 20 322 33 HOH HOH . 
G 4 HOH A 21 323 36 HOH HOH . 
G 4 HOH A 22 324 38 HOH HOH . 
G 4 HOH A 23 325 40 HOH HOH . 
G 4 HOH A 24 326 42 HOH HOH . 
G 4 HOH A 25 327 44 HOH HOH . 
G 4 HOH A 26 328 47 HOH HOH . 
G 4 HOH A 27 329 48 HOH HOH . 
G 4 HOH A 28 330 49 HOH HOH . 
G 4 HOH A 29 331 50 HOH HOH . 
G 4 HOH A 30 332 51 HOH HOH . 
G 4 HOH A 31 333 52 HOH HOH . 
G 4 HOH A 32 334 53 HOH HOH . 
G 4 HOH A 33 335 55 HOH HOH . 
G 4 HOH A 34 336 56 HOH HOH . 
G 4 HOH A 35 337 59 HOH HOH . 
G 4 HOH A 36 338 61 HOH HOH . 
G 4 HOH A 37 339 62 HOH HOH . 
G 4 HOH A 38 340 63 HOH HOH . 
G 4 HOH A 39 341 64 HOH HOH . 
G 4 HOH A 40 342 65 HOH HOH . 
G 4 HOH A 41 343 66 HOH HOH . 
G 4 HOH A 42 344 67 HOH HOH . 
G 4 HOH A 43 345 69 HOH HOH . 
G 4 HOH A 44 346 70 HOH HOH . 
G 4 HOH A 45 347 72 HOH HOH . 
G 4 HOH A 46 348 74 HOH HOH . 
G 4 HOH A 47 349 75 HOH HOH . 
G 4 HOH A 48 350 76 HOH HOH . 
G 4 HOH A 49 351 77 HOH HOH . 
G 4 HOH A 50 352 78 HOH HOH . 
G 4 HOH A 51 353 79 HOH HOH . 
G 4 HOH A 52 354 80 HOH HOH . 
G 4 HOH A 53 355 82 HOH HOH . 
G 4 HOH A 54 356 84 HOH HOH . 
G 4 HOH A 55 357 85 HOH HOH . 
G 4 HOH A 56 358 88 HOH HOH . 
G 4 HOH A 57 359 90 HOH HOH . 
G 4 HOH A 58 360 92 HOH HOH . 
G 4 HOH A 59 361 98 HOH HOH . 
G 4 HOH A 60 362 101 HOH HOH . 
G 4 HOH A 61 363 102 HOH HOH . 
G 4 HOH A 62 364 103 HOH HOH . 
G 4 HOH A 63 365 104 HOH HOH . 
G 4 HOH A 64 366 105 HOH HOH . 
G 4 HOH A 65 367 106 HOH HOH . 
G 4 HOH A 66 368 107 HOH HOH . 
G 4 HOH A 67 369 108 HOH HOH . 
G 4 HOH A 68 370 110 HOH HOH . 
G 4 HOH A 69 371 111 HOH HOH . 
G 4 HOH A 70 372 112 HOH HOH . 
G 4 HOH A 71 373 114 HOH HOH . 
G 4 HOH A 72 374 120 HOH HOH . 
G 4 HOH A 73 375 122 HOH HOH . 
G 4 HOH A 74 376 123 HOH HOH . 
G 4 HOH A 75 377 124 HOH HOH . 
G 4 HOH A 76 378 125 HOH HOH . 
G 4 HOH A 77 379 129 HOH HOH . 
G 4 HOH A 78 380 130 HOH HOH . 
G 4 HOH A 79 381 131 HOH HOH . 
G 4 HOH A 80 382 135 HOH HOH . 
G 4 HOH A 81 383 139 HOH HOH . 
G 4 HOH A 82 384 142 HOH HOH . 
G 4 HOH A 83 385 143 HOH HOH . 
G 4 HOH A 84 386 144 HOH HOH . 
G 4 HOH A 85 387 145 HOH HOH . 
G 4 HOH A 86 388 147 HOH HOH . 
G 4 HOH A 87 389 148 HOH HOH . 
G 4 HOH A 88 390 150 HOH HOH . 
G 4 HOH A 89 391 152 HOH HOH . 
G 4 HOH A 90 392 153 HOH HOH . 
G 4 HOH A 91 393 155 HOH HOH . 
G 4 HOH A 92 394 156 HOH HOH . 
G 4 HOH A 93 395 157 HOH HOH . 
G 4 HOH A 94 396 159 HOH HOH . 
G 4 HOH A 95 397 160 HOH HOH . 
G 4 HOH A 96 398 161 HOH HOH . 
G 4 HOH A 97 399 164 HOH HOH . 
G 4 HOH A 98 400 166 HOH HOH . 
G 4 HOH A 99 401 167 HOH HOH . 
G 4 HOH A 100 402 168 HOH HOH . 
G 4 HOH A 101 403 169 HOH HOH . 
G 4 HOH A 102 404 170 HOH HOH . 
G 4 HOH A 103 405 172 HOH HOH . 
G 4 HOH A 104 406 173 HOH HOH . 
G 4 HOH A 105 407 174 HOH HOH . 
G 4 HOH A 106 408 175 HOH HOH . 
G 4 HOH A 107 409 178 HOH HOH . 
G 4 HOH A 108 410 179 HOH HOH . 
G 4 HOH A 109 411 180 HOH HOH . 
G 4 HOH A 110 412 183 HOH HOH . 
G 4 HOH A 111 413 185 HOH HOH . 
G 4 HOH A 112 414 186 HOH HOH . 
G 4 HOH A 113 415 187 HOH HOH . 
G 4 HOH A 114 416 194 HOH HOH . 
G 4 HOH A 115 417 195 HOH HOH . 
G 4 HOH A 116 418 197 HOH HOH . 
H 4 HOH B 1 303 2 HOH HOH . 
H 4 HOH B 2 304 3 HOH HOH . 
H 4 HOH B 3 305 8 HOH HOH . 
H 4 HOH B 4 306 10 HOH HOH . 
H 4 HOH B 5 307 13 HOH HOH . 
H 4 HOH B 6 308 20 HOH HOH . 
H 4 HOH B 7 309 21 HOH HOH . 
H 4 HOH B 8 310 25 HOH HOH . 
H 4 HOH B 9 311 27 HOH HOH . 
H 4 HOH B 10 312 28 HOH HOH . 
H 4 HOH B 11 313 31 HOH HOH . 
H 4 HOH B 12 314 32 HOH HOH . 
H 4 HOH B 13 315 34 HOH HOH . 
H 4 HOH B 14 316 35 HOH HOH . 
H 4 HOH B 15 317 37 HOH HOH . 
H 4 HOH B 16 318 39 HOH HOH . 
H 4 HOH B 17 319 41 HOH HOH . 
H 4 HOH B 18 320 43 HOH HOH . 
H 4 HOH B 19 321 45 HOH HOH . 
H 4 HOH B 20 322 46 HOH HOH . 
H 4 HOH B 21 323 54 HOH HOH . 
H 4 HOH B 22 324 57 HOH HOH . 
H 4 HOH B 23 325 58 HOH HOH . 
H 4 HOH B 24 326 60 HOH HOH . 
H 4 HOH B 25 327 68 HOH HOH . 
H 4 HOH B 26 328 71 HOH HOH . 
H 4 HOH B 27 329 73 HOH HOH . 
H 4 HOH B 28 330 81 HOH HOH . 
H 4 HOH B 29 331 83 HOH HOH . 
H 4 HOH B 30 332 86 HOH HOH . 
H 4 HOH B 31 333 87 HOH HOH . 
H 4 HOH B 32 334 89 HOH HOH . 
H 4 HOH B 33 335 91 HOH HOH . 
H 4 HOH B 34 336 93 HOH HOH . 
H 4 HOH B 35 337 94 HOH HOH . 
H 4 HOH B 36 338 95 HOH HOH . 
H 4 HOH B 37 339 96 HOH HOH . 
H 4 HOH B 38 340 97 HOH HOH . 
H 4 HOH B 39 341 99 HOH HOH . 
H 4 HOH B 40 342 100 HOH HOH . 
H 4 HOH B 41 343 109 HOH HOH . 
H 4 HOH B 42 344 113 HOH HOH . 
H 4 HOH B 43 345 115 HOH HOH . 
H 4 HOH B 44 346 116 HOH HOH . 
H 4 HOH B 45 347 117 HOH HOH . 
H 4 HOH B 46 348 118 HOH HOH . 
H 4 HOH B 47 349 119 HOH HOH . 
H 4 HOH B 48 350 121 HOH HOH . 
H 4 HOH B 49 351 126 HOH HOH . 
H 4 HOH B 50 352 127 HOH HOH . 
H 4 HOH B 51 353 128 HOH HOH . 
H 4 HOH B 52 354 132 HOH HOH . 
H 4 HOH B 53 355 133 HOH HOH . 
H 4 HOH B 54 356 134 HOH HOH . 
H 4 HOH B 55 357 136 HOH HOH . 
H 4 HOH B 56 358 137 HOH HOH . 
H 4 HOH B 57 359 138 HOH HOH . 
H 4 HOH B 58 360 140 HOH HOH . 
H 4 HOH B 59 361 141 HOH HOH . 
H 4 HOH B 60 362 146 HOH HOH . 
H 4 HOH B 61 363 149 HOH HOH . 
H 4 HOH B 62 364 151 HOH HOH . 
H 4 HOH B 63 365 154 HOH HOH . 
H 4 HOH B 64 366 158 HOH HOH . 
H 4 HOH B 65 367 162 HOH HOH . 
H 4 HOH B 66 368 163 HOH HOH . 
H 4 HOH B 67 369 165 HOH HOH . 
H 4 HOH B 68 370 171 HOH HOH . 
H 4 HOH B 69 371 176 HOH HOH . 
H 4 HOH B 70 372 177 HOH HOH . 
H 4 HOH B 71 373 181 HOH HOH . 
H 4 HOH B 72 374 182 HOH HOH . 
H 4 HOH B 73 375 184 HOH HOH . 
H 4 HOH B 74 376 188 HOH HOH . 
H 4 HOH B 75 377 189 HOH HOH . 
H 4 HOH B 76 378 190 HOH HOH . 
H 4 HOH B 77 379 191 HOH HOH . 
H 4 HOH B 78 380 192 HOH HOH . 
H 4 HOH B 79 381 193 HOH HOH . 
H 4 HOH B 80 382 196 HOH HOH . 
H 4 HOH B 81 383 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 3TC . . . D 3 48.481 67.883 99.877 1 20.23 ? O1 3TC 302 A 1 
HETATM 2 C C1 3TC . . . D 3 47.401 67.354 99.787 1 17.45 ? C1 3TC 302 A 1 
HETATM 3 N N2 3TC . . . D 3 46.288 68.046 100.098 1 17.61 ? N2 3TC 302 A 1 
HETATM 4 C C3 3TC . . . D 3 45.104 67.435 99.989 1 16.05 ? C3 3TC 302 A 1 
HETATM 5 N N3 3TC . . . D 3 44.018 68.167 100.308 1 18.44 ? N3 3TC 302 A 1 
HETATM 6 C C5 3TC . . . D 3 44.989 66.105 99.496 1 20.17 ? C5 3TC 302 A 1 
HETATM 7 C C7 3TC . . . D 3 46.169 65.423 99.161 1 18.45 ? C7 3TC 302 A 1 
HETATM 8 N N1 3TC . . . D 3 47.348 66.048 99.299 1 20.77 ? N1 3TC 302 A 1 
HETATM 9 C C4 3TC . . . D 3 48.647 65.43 98.966 1 21.09 ? C4 3TC 302 A 1 
HETATM 10 C C6 3TC . . . D 3 49.178 66.035 97.649 1 20.83 ? C6 3TC 302 A 1 
HETATM 11 O O2 3TC . . . D 3 48.386 64.057 98.777 1 22 ? O2 3TC 302 A 1 
HETATM 12 C C2 3TC . . . D 3 48.851 63.535 97.525 1 22.08 ? C2 3TC 302 A 1 
HETATM 13 S S1 3TC . . . D 3 48.633 64.91 96.43 1 23.29 ? S1 3TC 302 A 1 
HETATM 14 C C8 3TC . . . D 3 48.044 62.337 97.113 1 21.99 ? C8 3TC 302 A 1 
HETATM 15 O O3 3TC . . . D 3 48.167 61.415 98.192 1 25.24 ? O3 3TC 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#