data_2NOF # _model_server_result.job_id GRBWI_3gGx_QdfnzEiArRA _model_server_result.datetime_utc '2024-11-04 22:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":328}' # _entry.id 2NOF # _exptl.entry_id 2NOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NOF _cell.length_a 92.267 _cell.length_b 92.267 _cell.length_c 211.128 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 C DA 22 1_555 B P 8OG 8 C 8OG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale2 B O3' 8OG 8 C 8OG 23 1_555 B P DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 B OP2 DC 11 C DC 26 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? metalc ? metalc2 B OP1 DC 11 C DC 26 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 C O CYS 239 A CYS 241 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 C O LEU 241 A LEU 243 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc5 C O VAL 244 A VAL 246 1_555 D CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? hydrog 'DA-DT PAIR' hydrog1 A N1 DA 4 B DA 4 1_555 B N3 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 5 B DG 5 1_555 B N3 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 5 B DG 5 1_555 B O2 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 5 B DG 5 1_555 B N4 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 6 B DA 6 1_555 B N3 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 6 B DA 6 1_555 B O4 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 7 B DC 7 1_555 B N1 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 7 B DC 7 1_555 B O6 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 7 B DC 7 1_555 B N2 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog10 A N3 DT 9 B DT 9 1_555 B N1 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 10 B DG 10 1_555 B N3 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 10 B DG 10 1_555 B O2 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 10 B DG 10 1_555 B N4 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NOF _atom_sites.fract_transf_matrix[1][1] 0.010838 _atom_sites.fract_transf_matrix[1][2] 0.006257 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 328 301 CA CA . E 5 HOH B 1 85 85 HOH HOH . E 5 HOH B 2 103 103 HOH HOH . E 5 HOH B 3 154 154 HOH HOH . E 5 HOH B 4 220 220 HOH HOH . E 5 HOH B 5 221 221 HOH HOH . E 5 HOH B 6 268 268 HOH HOH . E 5 HOH B 7 279 279 HOH HOH . F 5 HOH C 1 50 50 HOH HOH . F 5 HOH C 2 161 161 HOH HOH . F 5 HOH C 3 278 278 HOH HOH . F 5 HOH C 4 280 280 HOH HOH . G 5 HOH A 1 329 1 HOH TIP . G 5 HOH A 2 330 2 HOH TIP . G 5 HOH A 3 331 3 HOH TIP . G 5 HOH A 4 332 4 HOH TIP . G 5 HOH A 5 333 5 HOH TIP . G 5 HOH A 6 334 6 HOH TIP . G 5 HOH A 7 335 7 HOH TIP . G 5 HOH A 8 336 8 HOH TIP . G 5 HOH A 9 337 9 HOH TIP . G 5 HOH A 10 338 10 HOH TIP . G 5 HOH A 11 339 11 HOH TIP . G 5 HOH A 12 340 12 HOH TIP . G 5 HOH A 13 341 13 HOH TIP . G 5 HOH A 14 342 14 HOH TIP . G 5 HOH A 15 343 15 HOH TIP . G 5 HOH A 16 344 16 HOH TIP . G 5 HOH A 17 345 18 HOH TIP . G 5 HOH A 18 346 20 HOH TIP . G 5 HOH A 19 347 21 HOH TIP . G 5 HOH A 20 348 22 HOH TIP . G 5 HOH A 21 349 23 HOH TIP . G 5 HOH A 22 350 24 HOH TIP . G 5 HOH A 23 351 25 HOH TIP . G 5 HOH A 24 352 26 HOH TIP . G 5 HOH A 25 353 27 HOH TIP . G 5 HOH A 26 354 28 HOH TIP . G 5 HOH A 27 355 29 HOH TIP . G 5 HOH A 28 356 30 HOH TIP . G 5 HOH A 29 357 31 HOH TIP . G 5 HOH A 30 358 33 HOH TIP . G 5 HOH A 31 359 34 HOH TIP . G 5 HOH A 32 360 35 HOH TIP . G 5 HOH A 33 361 36 HOH TIP . G 5 HOH A 34 362 37 HOH TIP . G 5 HOH A 35 363 38 HOH TIP . G 5 HOH A 36 364 39 HOH TIP . G 5 HOH A 37 365 40 HOH HOH . G 5 HOH A 38 366 43 HOH HOH . G 5 HOH A 39 367 44 HOH HOH . G 5 HOH A 40 368 45 HOH HOH . G 5 HOH A 41 369 46 HOH HOH . G 5 HOH A 42 370 47 HOH HOH . G 5 HOH A 43 371 48 HOH HOH . G 5 HOH A 44 372 49 HOH HOH . G 5 HOH A 45 373 51 HOH HOH . G 5 HOH A 46 374 52 HOH HOH . G 5 HOH A 47 375 55 HOH HOH . G 5 HOH A 48 376 57 HOH HOH . G 5 HOH A 49 377 60 HOH HOH . G 5 HOH A 50 378 61 HOH HOH . G 5 HOH A 51 379 62 HOH HOH . G 5 HOH A 52 380 64 HOH HOH . G 5 HOH A 53 381 65 HOH HOH . G 5 HOH A 54 382 66 HOH HOH . G 5 HOH A 55 383 67 HOH HOH . G 5 HOH A 56 384 68 HOH HOH . G 5 HOH A 57 385 69 HOH HOH . G 5 HOH A 58 386 70 HOH HOH . G 5 HOH A 59 387 71 HOH HOH . G 5 HOH A 60 388 72 HOH HOH . G 5 HOH A 61 389 73 HOH HOH . G 5 HOH A 62 390 76 HOH HOH . G 5 HOH A 63 391 77 HOH HOH . G 5 HOH A 64 392 78 HOH HOH . G 5 HOH A 65 393 79 HOH HOH . G 5 HOH A 66 394 81 HOH HOH . G 5 HOH A 67 395 84 HOH HOH . G 5 HOH A 68 396 86 HOH HOH . G 5 HOH A 69 397 87 HOH HOH . G 5 HOH A 70 398 90 HOH HOH . G 5 HOH A 71 399 91 HOH HOH . G 5 HOH A 72 400 93 HOH HOH . G 5 HOH A 73 401 94 HOH HOH . G 5 HOH A 74 402 95 HOH HOH . G 5 HOH A 75 403 96 HOH HOH . G 5 HOH A 76 404 97 HOH HOH . G 5 HOH A 77 405 98 HOH HOH . G 5 HOH A 78 406 99 HOH HOH . G 5 HOH A 79 407 100 HOH HOH . G 5 HOH A 80 408 102 HOH HOH . G 5 HOH A 81 409 104 HOH HOH . G 5 HOH A 82 410 106 HOH HOH . G 5 HOH A 83 411 107 HOH HOH . G 5 HOH A 84 412 108 HOH HOH . G 5 HOH A 85 413 109 HOH HOH . G 5 HOH A 86 414 112 HOH HOH . G 5 HOH A 87 415 113 HOH HOH . G 5 HOH A 88 416 114 HOH HOH . G 5 HOH A 89 417 116 HOH HOH . G 5 HOH A 90 418 117 HOH HOH . G 5 HOH A 91 419 118 HOH HOH . G 5 HOH A 92 420 119 HOH HOH . G 5 HOH A 93 421 120 HOH HOH . G 5 HOH A 94 422 122 HOH HOH . G 5 HOH A 95 423 123 HOH HOH . G 5 HOH A 96 424 124 HOH HOH . G 5 HOH A 97 425 126 HOH HOH . G 5 HOH A 98 426 127 HOH HOH . G 5 HOH A 99 427 128 HOH HOH . G 5 HOH A 100 428 130 HOH HOH . G 5 HOH A 101 429 132 HOH HOH . G 5 HOH A 102 430 133 HOH HOH . G 5 HOH A 103 431 134 HOH HOH . G 5 HOH A 104 432 135 HOH HOH . G 5 HOH A 105 433 138 HOH HOH . G 5 HOH A 106 434 139 HOH HOH . G 5 HOH A 107 435 140 HOH HOH . G 5 HOH A 108 436 142 HOH HOH . G 5 HOH A 109 437 143 HOH HOH . G 5 HOH A 110 438 144 HOH HOH . G 5 HOH A 111 439 145 HOH HOH . G 5 HOH A 112 440 146 HOH HOH . G 5 HOH A 113 441 147 HOH HOH . G 5 HOH A 114 442 150 HOH HOH . G 5 HOH A 115 443 151 HOH HOH . G 5 HOH A 116 444 152 HOH HOH . G 5 HOH A 117 445 153 HOH HOH . G 5 HOH A 118 446 155 HOH HOH . G 5 HOH A 119 447 157 HOH HOH . G 5 HOH A 120 448 159 HOH HOH . G 5 HOH A 121 449 162 HOH HOH . G 5 HOH A 122 450 163 HOH HOH . G 5 HOH A 123 451 166 HOH HOH . G 5 HOH A 124 452 168 HOH HOH . G 5 HOH A 125 453 169 HOH HOH . G 5 HOH A 126 454 171 HOH HOH . G 5 HOH A 127 455 174 HOH HOH . G 5 HOH A 128 456 175 HOH HOH . G 5 HOH A 129 457 179 HOH HOH . G 5 HOH A 130 458 180 HOH HOH . G 5 HOH A 131 459 181 HOH HOH . G 5 HOH A 132 460 182 HOH HOH . G 5 HOH A 133 461 183 HOH HOH . G 5 HOH A 134 462 185 HOH HOH . G 5 HOH A 135 463 190 HOH HOH . G 5 HOH A 136 464 192 HOH HOH . G 5 HOH A 137 465 195 HOH HOH . G 5 HOH A 138 466 196 HOH HOH . G 5 HOH A 139 467 197 HOH HOH . G 5 HOH A 140 468 199 HOH HOH . G 5 HOH A 141 469 200 HOH HOH . G 5 HOH A 142 470 205 HOH HOH . G 5 HOH A 143 471 208 HOH HOH . G 5 HOH A 144 472 209 HOH HOH . G 5 HOH A 145 473 210 HOH HOH . G 5 HOH A 146 474 213 HOH HOH . G 5 HOH A 147 475 216 HOH HOH . G 5 HOH A 148 476 217 HOH HOH . G 5 HOH A 149 477 223 HOH HOH . G 5 HOH A 150 478 225 HOH HOH . G 5 HOH A 151 479 226 HOH HOH . G 5 HOH A 152 480 228 HOH HOH . G 5 HOH A 153 481 229 HOH HOH . G 5 HOH A 154 482 231 HOH HOH . G 5 HOH A 155 483 232 HOH HOH . G 5 HOH A 156 484 233 HOH HOH . G 5 HOH A 157 485 234 HOH HOH . G 5 HOH A 158 486 235 HOH HOH . G 5 HOH A 159 487 236 HOH HOH . G 5 HOH A 160 488 239 HOH HOH . G 5 HOH A 161 489 240 HOH HOH . G 5 HOH A 162 490 242 HOH HOH . G 5 HOH A 163 491 244 HOH HOH . G 5 HOH A 164 492 247 HOH HOH . G 5 HOH A 165 493 250 HOH HOH . G 5 HOH A 166 494 252 HOH HOH . G 5 HOH A 167 495 254 HOH HOH . G 5 HOH A 168 496 257 HOH HOH . G 5 HOH A 169 497 259 HOH HOH . G 5 HOH A 170 498 260 HOH HOH . G 5 HOH A 171 499 262 HOH HOH . G 5 HOH A 172 500 264 HOH HOH . G 5 HOH A 173 501 267 HOH HOH . G 5 HOH A 174 502 269 HOH HOH . G 5 HOH A 175 503 270 HOH HOH . G 5 HOH A 176 504 272 HOH HOH . G 5 HOH A 177 505 274 HOH HOH . G 5 HOH A 178 506 275 HOH HOH . G 5 HOH A 179 507 276 HOH HOH . G 5 HOH A 180 508 277 HOH HOH . G 5 HOH A 181 509 281 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 6.787 _atom_site.Cartn_y 29.606 _atom_site.Cartn_z 40.407 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 328 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #