data_2NOL # _model_server_result.job_id -U-JGb27whzqbGGcAYOGUQ _model_server_result.datetime_utc '2024-11-04 23:06:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2NOL # _exptl.entry_id 2NOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NOL _cell.length_a 92.037 _cell.length_b 92.037 _cell.length_c 211.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 C DA 22 1_555 B P 8OG 8 C 8OG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale2 B O3' 8OG 8 C 8OG 23 1_555 B P DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc1 B OP2 DA 7 C DA 22 1_555 D CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc2 B OP2 DC 11 C DC 26 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 B OP1 DC 11 C DC 26 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc4 C O CYS 239 A CYS 241 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 C O LEU 241 A LEU 243 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.341 ? metalc ? metalc6 C O VAL 244 A VAL 246 1_555 E CA CA . A CA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc7 E CA CA . A CA 328 1_555 H O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 B DG 1 1_555 B N3 DC 15 C DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 B DG 1 1_555 B O2 DC 15 C DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 B DG 1 1_555 B N4 DC 15 C DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog4 A O6 DG 2 B DG 2 1_555 B N4 DC 14 C DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 3 B DT 3 1_555 B N1 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 3 B DT 3 1_555 B N6 DA 13 C DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 B DA 4 1_555 B N3 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 B DA 4 1_555 B O4 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 5 B DG 5 1_555 B N3 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 5 B DG 5 1_555 B O2 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 5 B DG 5 1_555 B N4 DC 11 C DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog12 A N2 DG 5 B DG 5 1_555 B O2 DT 12 C DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 6 B DA 6 1_555 B N3 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 6 B DA 6 1_555 B O4 DT 10 C DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 7 B DC 7 1_555 B N1 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 7 B DC 7 1_555 B O6 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 7 B DC 7 1_555 B N2 DG 9 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 9 B DT 9 1_555 B N1 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 9 B DT 9 1_555 B N6 DA 7 C DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 10 B DG 10 1_555 B N3 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 10 B DG 10 1_555 B O2 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 10 B DG 10 1_555 B N4 DC 6 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 11 B DG 11 1_555 B N3 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 11 B DG 11 1_555 B O2 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 11 B DG 11 1_555 B N4 DC 5 C DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 12 B DA 12 1_555 B N3 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 12 B DA 12 1_555 B O4 DT 4 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DC 13 B DC 13 1_555 B N1 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N4 DC 13 B DC 13 1_555 B O6 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O2 DC 13 B DC 13 1_555 B N2 DG 3 C DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog31 A N1 DG 14 B DG 14 1_555 B O2 DC 2 C DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog32 A O2 DC 15 B DC 15 1_555 B N2 DG 1 C DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NOL _atom_sites.fract_transf_matrix[1][1] 0.010865 _atom_sites.fract_transf_matrix[1][2] 0.006273 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA C 1 301 301 CA CA . E 4 CA A 1 328 302 CA CA . F 5 HOH B 1 35 35 HOH TIP . F 5 HOH B 2 56 56 HOH TIP . F 5 HOH B 3 59 59 HOH TIP . F 5 HOH B 4 69 69 HOH TIP . F 5 HOH B 5 105 105 HOH TIP . F 5 HOH B 6 118 118 HOH TIP . G 5 HOH C 1 15 15 HOH TIP . G 5 HOH C 2 87 87 HOH TIP . G 5 HOH C 3 91 91 HOH TIP . G 5 HOH C 4 96 96 HOH TIP . G 5 HOH C 5 123 123 HOH HOH . G 5 HOH C 6 137 137 HOH HOH . G 5 HOH C 7 167 167 HOH HOH . G 5 HOH C 8 168 168 HOH HOH . G 5 HOH C 9 171 171 HOH HOH . H 5 HOH A 1 329 1 HOH TIP . H 5 HOH A 2 330 2 HOH TIP . H 5 HOH A 3 331 3 HOH TIP . H 5 HOH A 4 332 4 HOH TIP . H 5 HOH A 5 333 5 HOH TIP . H 5 HOH A 6 334 6 HOH TIP . H 5 HOH A 7 335 7 HOH TIP . H 5 HOH A 8 336 8 HOH TIP . H 5 HOH A 9 337 9 HOH TIP . H 5 HOH A 10 338 10 HOH TIP . H 5 HOH A 11 339 11 HOH TIP . H 5 HOH A 12 340 12 HOH TIP . H 5 HOH A 13 341 13 HOH TIP . H 5 HOH A 14 342 14 HOH TIP . H 5 HOH A 15 343 16 HOH TIP . H 5 HOH A 16 344 17 HOH TIP . H 5 HOH A 17 345 18 HOH TIP . H 5 HOH A 18 346 19 HOH TIP . H 5 HOH A 19 347 20 HOH TIP . H 5 HOH A 20 348 22 HOH TIP . H 5 HOH A 21 349 23 HOH TIP . H 5 HOH A 22 350 24 HOH TIP . H 5 HOH A 23 351 25 HOH TIP . H 5 HOH A 24 352 26 HOH TIP . H 5 HOH A 25 353 27 HOH TIP . H 5 HOH A 26 354 28 HOH TIP . H 5 HOH A 27 355 29 HOH TIP . H 5 HOH A 28 356 30 HOH TIP . H 5 HOH A 29 357 31 HOH TIP . H 5 HOH A 30 358 32 HOH TIP . H 5 HOH A 31 359 33 HOH TIP . H 5 HOH A 32 360 34 HOH TIP . H 5 HOH A 33 361 36 HOH TIP . H 5 HOH A 34 362 37 HOH TIP . H 5 HOH A 35 363 38 HOH TIP . H 5 HOH A 36 364 39 HOH TIP . H 5 HOH A 37 365 40 HOH TIP . H 5 HOH A 38 366 42 HOH TIP . H 5 HOH A 39 367 44 HOH TIP . H 5 HOH A 40 368 46 HOH TIP . H 5 HOH A 41 369 47 HOH TIP . H 5 HOH A 42 370 48 HOH TIP . H 5 HOH A 43 371 49 HOH TIP . H 5 HOH A 44 372 50 HOH TIP . H 5 HOH A 45 373 51 HOH TIP . H 5 HOH A 46 374 52 HOH TIP . H 5 HOH A 47 375 54 HOH TIP . H 5 HOH A 48 376 55 HOH TIP . H 5 HOH A 49 377 57 HOH TIP . H 5 HOH A 50 378 58 HOH TIP . H 5 HOH A 51 379 61 HOH TIP . H 5 HOH A 52 380 62 HOH TIP . H 5 HOH A 53 381 63 HOH TIP . H 5 HOH A 54 382 64 HOH TIP . H 5 HOH A 55 383 65 HOH TIP . H 5 HOH A 56 384 67 HOH TIP . H 5 HOH A 57 385 68 HOH TIP . H 5 HOH A 58 386 70 HOH TIP . H 5 HOH A 59 387 71 HOH TIP . H 5 HOH A 60 388 72 HOH TIP . H 5 HOH A 61 389 75 HOH TIP . H 5 HOH A 62 390 76 HOH TIP . H 5 HOH A 63 391 77 HOH TIP . H 5 HOH A 64 392 80 HOH TIP . H 5 HOH A 65 393 81 HOH TIP . H 5 HOH A 66 394 83 HOH TIP . H 5 HOH A 67 395 84 HOH TIP . H 5 HOH A 68 396 85 HOH TIP . H 5 HOH A 69 397 90 HOH TIP . H 5 HOH A 70 398 93 HOH TIP . H 5 HOH A 71 399 94 HOH TIP . H 5 HOH A 72 400 97 HOH TIP . H 5 HOH A 73 401 98 HOH TIP . H 5 HOH A 74 402 99 HOH TIP . H 5 HOH A 75 403 100 HOH TIP . H 5 HOH A 76 404 101 HOH TIP . H 5 HOH A 77 405 102 HOH TIP . H 5 HOH A 78 406 104 HOH TIP . H 5 HOH A 79 407 107 HOH TIP . H 5 HOH A 80 408 108 HOH TIP . H 5 HOH A 81 409 109 HOH TIP . H 5 HOH A 82 410 113 HOH TIP . H 5 HOH A 83 411 114 HOH TIP . H 5 HOH A 84 412 117 HOH TIP . H 5 HOH A 85 413 119 HOH TIP . H 5 HOH A 86 414 121 HOH HOH . H 5 HOH A 87 415 122 HOH HOH . H 5 HOH A 88 416 124 HOH HOH . H 5 HOH A 89 417 125 HOH HOH . H 5 HOH A 90 418 126 HOH HOH . H 5 HOH A 91 419 127 HOH HOH . H 5 HOH A 92 420 128 HOH HOH . H 5 HOH A 93 421 129 HOH HOH . H 5 HOH A 94 422 130 HOH HOH . H 5 HOH A 95 423 131 HOH HOH . H 5 HOH A 96 424 132 HOH HOH . H 5 HOH A 97 425 133 HOH HOH . H 5 HOH A 98 426 134 HOH HOH . H 5 HOH A 99 427 135 HOH HOH . H 5 HOH A 100 428 136 HOH HOH . H 5 HOH A 101 429 138 HOH HOH . H 5 HOH A 102 430 139 HOH HOH . H 5 HOH A 103 431 140 HOH HOH . H 5 HOH A 104 432 141 HOH HOH . H 5 HOH A 105 433 142 HOH HOH . H 5 HOH A 106 434 143 HOH HOH . H 5 HOH A 107 435 144 HOH HOH . H 5 HOH A 108 436 145 HOH HOH . H 5 HOH A 109 437 146 HOH HOH . H 5 HOH A 110 438 147 HOH HOH . H 5 HOH A 111 439 148 HOH HOH . H 5 HOH A 112 440 149 HOH HOH . H 5 HOH A 113 441 150 HOH HOH . H 5 HOH A 114 442 151 HOH HOH . H 5 HOH A 115 443 152 HOH HOH . H 5 HOH A 116 444 153 HOH HOH . H 5 HOH A 117 445 154 HOH HOH . H 5 HOH A 118 446 155 HOH HOH . H 5 HOH A 119 447 156 HOH HOH . H 5 HOH A 120 448 157 HOH HOH . H 5 HOH A 121 449 159 HOH HOH . H 5 HOH A 122 450 160 HOH HOH . H 5 HOH A 123 451 161 HOH HOH . H 5 HOH A 124 452 162 HOH HOH . H 5 HOH A 125 453 163 HOH HOH . H 5 HOH A 126 454 164 HOH HOH . H 5 HOH A 127 455 165 HOH HOH . H 5 HOH A 128 456 166 HOH HOH . H 5 HOH A 129 457 169 HOH HOH . H 5 HOH A 130 458 170 HOH HOH . H 5 HOH A 131 459 172 HOH HOH . H 5 HOH A 132 460 173 HOH HOH . H 5 HOH A 133 461 174 HOH HOH . H 5 HOH A 134 462 176 HOH HOH . H 5 HOH A 135 463 177 HOH HOH . H 5 HOH A 136 464 178 HOH HOH . H 5 HOH A 137 465 179 HOH HOH . H 5 HOH A 138 466 180 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.618 _atom_site.Cartn_y 32.175 _atom_site.Cartn_z 40.229 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #