data_2NOM
#
_model_server_result.job_id            THO4vHI_qBi5_YeffhOKkw 
_model_server_result.datetime_utc      '2025-06-19 12:41:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2nom 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    2NOM 
#
_exptl.entry_id    2NOM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.46 
_cell.angle_gamma         90 
_cell.entry_id            2NOM 
_cell.length_a            79.142 
_cell.length_b            41.659 
_cell.length_c            104.286 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NOM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 86 A ASP 66 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 A OD1 ASP 86 A ASP 66 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc3 A OD2 ASP 86 A ASP 66 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? 
metalc ? metalc4 A OD2 ASP 88 A ASP 68 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc5 A OD1 ASP 88 A ASP 68 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc6 A OD2 ASP 88 A ASP 68 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc7 A OD2 ASP 156 A ASP 136 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc8 C MG MG . A MG 401 1_555 E O1B DUT . A DUT 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc9 C MG MG . A MG 401 1_555 E O3G DUT . A DUT 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc10 C MG MG . A MG 401 1_555 G O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? 
metalc ? metalc11 C MG MG . A MG 401 1_555 G O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc12 D MG MG . A MG 402 1_555 G O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc13 D MG MG . A MG 402 1_555 G O HOH . A HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc14 D MG MG . A MG 402 1_555 G O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2NOM 
_atom_sites.fract_transf_matrix[1][1]    0.012636 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00143 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024004 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 401 MG MG . 
D 2 MG A 1 402 402 MG MG . 
E 3 DUT A 1 501 501 DUT DUT . 
F 3 DUT B 1 502 502 DUT DUT . 
G 4 HOH A 1 502 1 HOH HOH . 
G 4 HOH A 2 503 3 HOH HOH . 
G 4 HOH A 3 504 4 HOH HOH . 
G 4 HOH A 4 505 5 HOH HOH . 
G 4 HOH A 5 506 6 HOH HOH . 
G 4 HOH A 6 507 7 HOH HOH . 
G 4 HOH A 7 508 8 HOH HOH . 
G 4 HOH A 8 509 9 HOH HOH . 
G 4 HOH A 9 510 10 HOH HOH . 
G 4 HOH A 10 511 11 HOH HOH . 
G 4 HOH A 11 512 12 HOH HOH . 
G 4 HOH A 12 513 13 HOH HOH . 
G 4 HOH A 13 514 14 HOH HOH . 
G 4 HOH A 14 515 15 HOH HOH . 
G 4 HOH A 15 516 16 HOH HOH . 
G 4 HOH A 16 517 17 HOH HOH . 
G 4 HOH A 17 518 18 HOH HOH . 
G 4 HOH A 18 519 22 HOH HOH . 
G 4 HOH A 19 520 23 HOH HOH . 
G 4 HOH A 20 521 24 HOH HOH . 
G 4 HOH A 21 522 25 HOH HOH . 
G 4 HOH A 22 523 26 HOH HOH . 
G 4 HOH A 23 524 27 HOH HOH . 
G 4 HOH A 24 525 28 HOH HOH . 
G 4 HOH A 25 526 29 HOH HOH . 
G 4 HOH A 26 527 31 HOH HOH . 
G 4 HOH A 27 528 33 HOH HOH . 
G 4 HOH A 28 529 34 HOH HOH . 
G 4 HOH A 29 530 35 HOH HOH . 
G 4 HOH A 30 531 36 HOH HOH . 
G 4 HOH A 31 532 37 HOH HOH . 
G 4 HOH A 32 533 39 HOH HOH . 
G 4 HOH A 33 534 40 HOH HOH . 
G 4 HOH A 34 535 41 HOH HOH . 
G 4 HOH A 35 536 42 HOH HOH . 
G 4 HOH A 36 537 43 HOH HOH . 
G 4 HOH A 37 538 45 HOH HOH . 
G 4 HOH A 38 539 46 HOH HOH . 
G 4 HOH A 39 540 47 HOH HOH . 
G 4 HOH A 40 541 48 HOH HOH . 
G 4 HOH A 41 542 50 HOH HOH . 
G 4 HOH A 42 543 52 HOH HOH . 
G 4 HOH A 43 544 53 HOH HOH . 
G 4 HOH A 44 545 54 HOH HOH . 
G 4 HOH A 45 546 55 HOH HOH . 
G 4 HOH A 46 547 56 HOH HOH . 
G 4 HOH A 47 548 57 HOH HOH . 
G 4 HOH A 48 549 59 HOH HOH . 
G 4 HOH A 49 550 60 HOH HOH . 
G 4 HOH A 50 551 61 HOH HOH . 
G 4 HOH A 51 552 64 HOH HOH . 
G 4 HOH A 52 553 66 HOH HOH . 
G 4 HOH A 53 554 70 HOH HOH . 
G 4 HOH A 54 555 71 HOH HOH . 
G 4 HOH A 55 556 73 HOH HOH . 
G 4 HOH A 56 557 74 HOH HOH . 
G 4 HOH A 57 558 75 HOH HOH . 
G 4 HOH A 58 559 76 HOH HOH . 
G 4 HOH A 59 560 77 HOH HOH . 
G 4 HOH A 60 561 78 HOH HOH . 
G 4 HOH A 61 562 79 HOH HOH . 
G 4 HOH A 62 563 80 HOH HOH . 
G 4 HOH A 63 564 81 HOH HOH . 
G 4 HOH A 64 565 83 HOH HOH . 
G 4 HOH A 65 566 84 HOH HOH . 
G 4 HOH A 66 567 86 HOH HOH . 
G 4 HOH A 67 568 87 HOH HOH . 
G 4 HOH A 68 569 89 HOH HOH . 
G 4 HOH A 69 570 90 HOH HOH . 
G 4 HOH A 70 571 92 HOH HOH . 
G 4 HOH A 71 572 93 HOH HOH . 
G 4 HOH A 72 573 96 HOH HOH . 
G 4 HOH A 73 574 99 HOH HOH . 
G 4 HOH A 74 575 100 HOH HOH . 
G 4 HOH A 75 576 102 HOH HOH . 
G 4 HOH A 76 577 103 HOH HOH . 
G 4 HOH A 77 578 104 HOH HOH . 
G 4 HOH A 78 579 106 HOH HOH . 
G 4 HOH A 79 580 107 HOH HOH . 
G 4 HOH A 80 581 108 HOH HOH . 
G 4 HOH A 81 582 109 HOH HOH . 
G 4 HOH A 82 583 110 HOH HOH . 
G 4 HOH A 83 584 112 HOH HOH . 
G 4 HOH A 84 585 113 HOH HOH . 
G 4 HOH A 85 586 114 HOH HOH . 
G 4 HOH A 86 587 115 HOH HOH . 
G 4 HOH A 87 588 117 HOH HOH . 
G 4 HOH A 88 589 118 HOH HOH . 
G 4 HOH A 89 590 119 HOH HOH . 
G 4 HOH A 90 591 120 HOH HOH . 
G 4 HOH A 91 592 121 HOH HOH . 
G 4 HOH A 92 593 122 HOH HOH . 
G 4 HOH A 93 594 123 HOH HOH . 
G 4 HOH A 94 595 124 HOH HOH . 
H 4 HOH B 1 503 2 HOH HOH . 
H 4 HOH B 2 504 19 HOH HOH . 
H 4 HOH B 3 505 20 HOH HOH . 
H 4 HOH B 4 506 21 HOH HOH . 
H 4 HOH B 5 507 30 HOH HOH . 
H 4 HOH B 6 508 32 HOH HOH . 
H 4 HOH B 7 509 38 HOH HOH . 
H 4 HOH B 8 510 44 HOH HOH . 
H 4 HOH B 9 511 49 HOH HOH . 
H 4 HOH B 10 512 51 HOH HOH . 
H 4 HOH B 11 513 58 HOH HOH . 
H 4 HOH B 12 514 62 HOH HOH . 
H 4 HOH B 13 515 63 HOH HOH . 
H 4 HOH B 14 516 65 HOH HOH . 
H 4 HOH B 15 517 67 HOH HOH . 
H 4 HOH B 16 518 68 HOH HOH . 
H 4 HOH B 17 519 69 HOH HOH . 
H 4 HOH B 18 520 72 HOH HOH . 
H 4 HOH B 19 521 82 HOH HOH . 
H 4 HOH B 20 522 85 HOH HOH . 
H 4 HOH B 21 523 88 HOH HOH . 
H 4 HOH B 22 524 91 HOH HOH . 
H 4 HOH B 23 525 94 HOH HOH . 
H 4 HOH B 24 526 95 HOH HOH . 
H 4 HOH B 25 527 97 HOH HOH . 
H 4 HOH B 26 528 98 HOH HOH . 
H 4 HOH B 27 529 101 HOH HOH . 
H 4 HOH B 28 530 105 HOH HOH . 
H 4 HOH B 29 531 111 HOH HOH . 
H 4 HOH B 30 532 116 HOH HOH . 
H 4 HOH B 31 533 125 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -14.748 
_atom_site.Cartn_y               3.111 
_atom_site.Cartn_z               -2.983 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#