data_2NOP # _model_server_result.job_id N-sfQuEZolbCuFAjW9uBsg _model_server_result.datetime_utc '2025-09-07 08:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 2NOP # _exptl.entry_id 2NOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NOP _cell.length_a 109.879 _cell.length_b 109.879 _cell.length_c 84.17 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 109.879 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 54.9395 95.158005 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 192 n y N1 C5 IMD sing 193 n y N1 HN1 IMD sing 194 n n C2 N3 IMD doub 195 n y C2 H2 IMD sing 196 n n N3 C4 IMD sing 197 n y N3 HN3 IMD sing 198 n n C4 C5 IMD doub 199 n y C4 H4 IMD sing 200 n n C5 H5 IMD sing 201 n n # _atom_sites.entry_id 2NOP _atom_sites.fract_transf_matrix[1][1] 0.009101 _atom_sites.fract_transf_matrix[1][2] 0.005254 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 3 ACT A 1 601 601 ACT ACT . D 4 IMD A 1 701 1 IMD IMD . E 5 GOL A 1 801 1 GOL GOL . F 6 HOH A 1 802 602 HOH HOH . F 6 HOH A 2 803 603 HOH HOH . F 6 HOH A 3 804 604 HOH HOH . F 6 HOH A 4 805 605 HOH HOH . F 6 HOH A 5 806 606 HOH HOH . F 6 HOH A 6 807 607 HOH HOH . F 6 HOH A 7 808 608 HOH HOH . F 6 HOH A 8 809 609 HOH HOH . F 6 HOH A 9 810 610 HOH HOH . F 6 HOH A 10 811 611 HOH HOH . F 6 HOH A 11 812 612 HOH HOH . F 6 HOH A 12 813 613 HOH HOH . F 6 HOH A 13 814 614 HOH HOH . F 6 HOH A 14 815 615 HOH HOH . F 6 HOH A 15 816 616 HOH HOH . F 6 HOH A 16 817 617 HOH HOH . F 6 HOH A 17 818 618 HOH HOH . F 6 HOH A 18 819 619 HOH HOH . F 6 HOH A 19 820 621 HOH HOH . F 6 HOH A 20 821 622 HOH HOH . F 6 HOH A 21 822 623 HOH HOH . F 6 HOH A 22 823 624 HOH HOH . F 6 HOH A 23 824 625 HOH HOH . F 6 HOH A 24 825 626 HOH HOH . F 6 HOH A 25 826 627 HOH HOH . F 6 HOH A 26 827 628 HOH HOH . F 6 HOH A 27 828 629 HOH HOH . F 6 HOH A 28 829 630 HOH HOH . F 6 HOH A 29 830 631 HOH HOH . F 6 HOH A 30 831 632 HOH HOH . F 6 HOH A 31 832 633 HOH HOH . F 6 HOH A 32 833 634 HOH HOH . F 6 HOH A 33 834 635 HOH HOH . F 6 HOH A 34 835 636 HOH HOH . F 6 HOH A 35 836 637 HOH HOH . F 6 HOH A 36 837 638 HOH HOH . F 6 HOH A 37 838 639 HOH HOH . F 6 HOH A 38 839 640 HOH HOH . F 6 HOH A 39 840 641 HOH HOH . F 6 HOH A 40 841 642 HOH HOH . F 6 HOH A 41 842 643 HOH HOH . F 6 HOH A 42 843 644 HOH HOH . F 6 HOH A 43 844 645 HOH HOH . F 6 HOH A 44 845 646 HOH HOH . F 6 HOH A 45 846 647 HOH HOH . F 6 HOH A 46 847 648 HOH HOH . F 6 HOH A 47 848 649 HOH HOH . F 6 HOH A 48 849 650 HOH HOH . F 6 HOH A 49 850 651 HOH HOH . F 6 HOH A 50 851 652 HOH HOH . F 6 HOH A 51 852 653 HOH HOH . F 6 HOH A 52 853 654 HOH HOH . F 6 HOH A 53 854 655 HOH HOH . F 6 HOH A 54 855 656 HOH HOH . F 6 HOH A 55 856 657 HOH HOH . F 6 HOH A 56 857 658 HOH HOH . F 6 HOH A 57 858 659 HOH HOH . F 6 HOH A 58 859 660 HOH HOH . F 6 HOH A 59 860 661 HOH HOH . F 6 HOH A 60 861 662 HOH HOH . F 6 HOH A 61 862 663 HOH HOH . F 6 HOH A 62 863 664 HOH HOH . F 6 HOH A 63 864 666 HOH HOH . F 6 HOH A 64 865 667 HOH HOH . F 6 HOH A 65 866 668 HOH HOH . F 6 HOH A 66 867 669 HOH HOH . F 6 HOH A 67 868 675 HOH HOH . F 6 HOH A 68 869 676 HOH HOH . F 6 HOH A 69 870 677 HOH HOH . F 6 HOH A 70 871 678 HOH HOH . F 6 HOH A 71 872 679 HOH HOH . F 6 HOH A 72 873 680 HOH HOH . F 6 HOH A 73 874 681 HOH HOH . F 6 HOH A 74 875 2 HOH HOH . F 6 HOH A 75 876 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . D 4 41.806 18.291 24.056 1 40.1 ? N1 IMD 701 A 1 HETATM 2 C C2 IMD . . . D 4 43.074 17.977 23.702 1 34.99 ? C2 IMD 701 A 1 HETATM 3 N N3 IMD . . . D 4 43.443 18.78 22.687 1 33.39 ? N3 IMD 701 A 1 HETATM 4 C C4 IMD . . . D 4 42.412 19.601 22.383 1 36.6 ? C4 IMD 701 A 1 HETATM 5 C C5 IMD . . . D 4 41.38 19.29 23.247 1 38.22 ? C5 IMD 701 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #