data_2NP8 # _model_server_result.job_id -uYVJZP3H9ja35cnWCJzLw _model_server_result.datetime_utc '2024-11-22 05:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2np8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":394}' # _entry.id 2NP8 # _exptl.entry_id 2NP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.396 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(4-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-2-YL)AMINO]PHENYL}CYCLOPROPANECARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NP8 _cell.length_a 81.544 _cell.length_b 81.544 _cell.length_c 172.038 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H18 F3 N5 O' _chem_comp.formula_weight 413.396 _chem_comp.id CC3 _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(4-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}PYRIMIDIN-2-YL)AMINO]PHENYL}CYCLOPROPANECARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C26 CC3 doub 70 n n C26 N25 CC3 sing 71 n n C26 C28 CC3 sing 72 n n C28 C30 CC3 sing 73 n n C28 C29 CC3 sing 74 n n C28 H28 CC3 sing 75 n n C30 C29 CC3 sing 76 n n C30 H301 CC3 sing 77 n n C30 H302 CC3 sing 78 n n C29 H291 CC3 sing 79 n n C29 H292 CC3 sing 80 n n N25 C21 CC3 sing 81 n n N25 HN25 CC3 sing 82 n n C21 C20 CC3 sing 83 n y C21 C22 CC3 doub 84 n y C20 C19 CC3 doub 85 n y C20 H20 CC3 sing 86 n n C22 C23 CC3 sing 87 n y C22 H22 CC3 sing 88 n n C23 C24 CC3 doub 89 n y C23 H23 CC3 sing 90 n n C24 C19 CC3 sing 91 n y C24 H24 CC3 sing 92 n n C19 N18 CC3 sing 93 n n N18 C16 CC3 sing 94 n n N18 HN18 CC3 sing 95 n n C16 N15 CC3 doub 96 n y C16 N17 CC3 sing 97 n y N15 C14 CC3 sing 98 n y C14 C13 CC3 doub 99 n y C14 H14 CC3 sing 100 n n C13 C12 CC3 sing 101 n y C13 H13 CC3 sing 102 n n N17 C12 CC3 doub 103 n y C12 N11 CC3 sing 104 n n N11 C1 CC3 sing 105 n n N11 HN11 CC3 sing 106 n n C1 C6 CC3 doub 107 n y C1 C2 CC3 sing 108 n y C6 C5 CC3 sing 109 n y C6 H6 CC3 sing 110 n n C5 C7 CC3 sing 111 n n C5 C4 CC3 doub 112 n y C7 F10 CC3 sing 113 n n C7 F9 CC3 sing 114 n n C7 F8 CC3 sing 115 n n C4 C3 CC3 sing 116 n y C4 H4 CC3 sing 117 n n C3 C2 CC3 doub 118 n y C3 H3 CC3 sing 119 n n C2 H2 CC3 sing 120 n n # _atom_sites.entry_id 2NP8 _atom_sites.fract_transf_matrix[1][1] 0.012263 _atom_sites.fract_transf_matrix[1][2] 0.00708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 392 392 SO4 SO4 . C 2 SO4 A 1 393 393 SO4 SO4 . D 3 CC3 A 1 394 394 CC3 CC3 . E 4 HOH A 1 395 395 HOH HOH . E 4 HOH A 2 396 396 HOH HOH . E 4 HOH A 3 397 397 HOH HOH . E 4 HOH A 4 398 398 HOH HOH . E 4 HOH A 5 399 399 HOH HOH . E 4 HOH A 6 400 400 HOH HOH . E 4 HOH A 7 401 401 HOH HOH . E 4 HOH A 8 402 402 HOH HOH . E 4 HOH A 9 403 403 HOH HOH . E 4 HOH A 10 404 404 HOH HOH . E 4 HOH A 11 405 405 HOH HOH . E 4 HOH A 12 406 406 HOH HOH . E 4 HOH A 13 407 407 HOH HOH . E 4 HOH A 14 408 408 HOH HOH . E 4 HOH A 15 409 409 HOH HOH . E 4 HOH A 16 410 410 HOH HOH . E 4 HOH A 17 411 411 HOH HOH . E 4 HOH A 18 412 412 HOH HOH . E 4 HOH A 19 413 413 HOH HOH . E 4 HOH A 20 414 414 HOH HOH . E 4 HOH A 21 415 415 HOH HOH . E 4 HOH A 22 416 416 HOH HOH . E 4 HOH A 23 417 417 HOH HOH . E 4 HOH A 24 418 418 HOH HOH . E 4 HOH A 25 419 419 HOH HOH . E 4 HOH A 26 420 420 HOH HOH . E 4 HOH A 27 421 421 HOH HOH . E 4 HOH A 28 422 422 HOH HOH . E 4 HOH A 29 423 423 HOH HOH . E 4 HOH A 30 424 424 HOH HOH . E 4 HOH A 31 425 425 HOH HOH . E 4 HOH A 32 426 426 HOH HOH . E 4 HOH A 33 427 427 HOH HOH . E 4 HOH A 34 428 428 HOH HOH . E 4 HOH A 35 429 429 HOH HOH . E 4 HOH A 36 430 430 HOH HOH . E 4 HOH A 37 431 431 HOH HOH . E 4 HOH A 38 432 432 HOH HOH . E 4 HOH A 39 433 433 HOH HOH . E 4 HOH A 40 434 434 HOH HOH . E 4 HOH A 41 435 435 HOH HOH . E 4 HOH A 42 436 436 HOH HOH . E 4 HOH A 43 437 437 HOH HOH . E 4 HOH A 44 438 438 HOH HOH . E 4 HOH A 45 439 439 HOH HOH . E 4 HOH A 46 440 440 HOH HOH . E 4 HOH A 47 441 441 HOH HOH . E 4 HOH A 48 442 442 HOH HOH . E 4 HOH A 49 443 443 HOH HOH . E 4 HOH A 50 444 444 HOH HOH . E 4 HOH A 51 445 445 HOH HOH . E 4 HOH A 52 446 446 HOH HOH . E 4 HOH A 53 447 447 HOH HOH . E 4 HOH A 54 448 448 HOH HOH . E 4 HOH A 55 449 449 HOH HOH . E 4 HOH A 56 450 450 HOH HOH . E 4 HOH A 57 451 451 HOH HOH . E 4 HOH A 58 452 452 HOH HOH . E 4 HOH A 59 453 453 HOH HOH . E 4 HOH A 60 454 454 HOH HOH . E 4 HOH A 61 455 455 HOH HOH . E 4 HOH A 62 456 456 HOH HOH . E 4 HOH A 63 457 457 HOH HOH . E 4 HOH A 64 458 458 HOH HOH . E 4 HOH A 65 459 459 HOH HOH . E 4 HOH A 66 460 460 HOH HOH . E 4 HOH A 67 461 461 HOH HOH . E 4 HOH A 68 462 462 HOH HOH . E 4 HOH A 69 463 463 HOH HOH . E 4 HOH A 70 464 464 HOH HOH . E 4 HOH A 71 465 465 HOH HOH . E 4 HOH A 72 466 466 HOH HOH . E 4 HOH A 73 467 467 HOH HOH . E 4 HOH A 74 468 468 HOH HOH . E 4 HOH A 75 469 469 HOH HOH . E 4 HOH A 76 470 470 HOH HOH . E 4 HOH A 77 471 471 HOH HOH . E 4 HOH A 78 472 472 HOH HOH . E 4 HOH A 79 473 473 HOH HOH . E 4 HOH A 80 474 474 HOH HOH . E 4 HOH A 81 475 475 HOH HOH . E 4 HOH A 82 476 476 HOH HOH . E 4 HOH A 83 477 477 HOH HOH . E 4 HOH A 84 478 478 HOH HOH . E 4 HOH A 85 479 479 HOH HOH . E 4 HOH A 86 480 480 HOH HOH . E 4 HOH A 87 481 481 HOH HOH . E 4 HOH A 88 482 482 HOH HOH . E 4 HOH A 89 483 483 HOH HOH . E 4 HOH A 90 484 484 HOH HOH . E 4 HOH A 91 485 485 HOH HOH . E 4 HOH A 92 486 486 HOH HOH . E 4 HOH A 93 487 487 HOH HOH . E 4 HOH A 94 488 488 HOH HOH . E 4 HOH A 95 489 489 HOH HOH . E 4 HOH A 96 490 490 HOH HOH . E 4 HOH A 97 491 491 HOH HOH . E 4 HOH A 98 492 492 HOH HOH . E 4 HOH A 99 493 493 HOH HOH . E 4 HOH A 100 494 494 HOH HOH . E 4 HOH A 101 495 495 HOH HOH . E 4 HOH A 102 496 496 HOH HOH . E 4 HOH A 103 497 497 HOH HOH . E 4 HOH A 104 498 498 HOH HOH . E 4 HOH A 105 499 499 HOH HOH . E 4 HOH A 106 500 500 HOH HOH . E 4 HOH A 107 501 501 HOH HOH . E 4 HOH A 108 502 502 HOH HOH . E 4 HOH A 109 503 503 HOH HOH . E 4 HOH A 110 504 504 HOH HOH . E 4 HOH A 111 505 505 HOH HOH . E 4 HOH A 112 506 506 HOH HOH . E 4 HOH A 113 507 507 HOH HOH . E 4 HOH A 114 508 508 HOH HOH . E 4 HOH A 115 509 509 HOH HOH . E 4 HOH A 116 510 510 HOH HOH . E 4 HOH A 117 511 511 HOH HOH . E 4 HOH A 118 512 512 HOH HOH . E 4 HOH A 119 513 513 HOH HOH . E 4 HOH A 120 514 514 HOH HOH . E 4 HOH A 121 515 515 HOH HOH . E 4 HOH A 122 516 516 HOH HOH . E 4 HOH A 123 517 517 HOH HOH . E 4 HOH A 124 518 393 HOH HOH . E 4 HOH A 125 519 397 HOH HOH . E 4 HOH A 126 520 399 HOH HOH . E 4 HOH A 127 521 521 HOH HOH . E 4 HOH A 128 522 402 HOH HOH . E 4 HOH A 129 523 523 HOH HOH . E 4 HOH A 130 524 403 HOH HOH . E 4 HOH A 131 525 405 HOH HOH . E 4 HOH A 132 526 526 HOH HOH . E 4 HOH A 133 527 527 HOH HOH . E 4 HOH A 134 528 528 HOH HOH . E 4 HOH A 135 529 409 HOH HOH . E 4 HOH A 136 530 530 HOH HOH . E 4 HOH A 137 531 531 HOH HOH . E 4 HOH A 138 532 532 HOH HOH . E 4 HOH A 139 533 410 HOH HOH . E 4 HOH A 140 534 412 HOH HOH . E 4 HOH A 141 535 417 HOH HOH . E 4 HOH A 142 536 419 HOH HOH . E 4 HOH A 143 537 421 HOH HOH . E 4 HOH A 144 538 422 HOH HOH . E 4 HOH A 145 539 539 HOH HOH . E 4 HOH A 146 540 540 HOH HOH . E 4 HOH A 147 541 424 HOH HOH . E 4 HOH A 148 542 542 HOH HOH . E 4 HOH A 149 543 543 HOH HOH . E 4 HOH A 150 544 544 HOH HOH . E 4 HOH A 151 545 545 HOH HOH . E 4 HOH A 152 546 426 HOH HOH . E 4 HOH A 153 547 547 HOH HOH . E 4 HOH A 154 548 427 HOH HOH . E 4 HOH A 155 549 429 HOH HOH . E 4 HOH A 156 550 550 HOH HOH . E 4 HOH A 157 551 551 HOH HOH . E 4 HOH A 158 552 432 HOH HOH . E 4 HOH A 159 553 433 HOH HOH . E 4 HOH A 160 554 434 HOH HOH . E 4 HOH A 161 555 436 HOH HOH . E 4 HOH A 162 556 556 HOH HOH . E 4 HOH A 163 557 437 HOH HOH . E 4 HOH A 164 558 441 HOH HOH . E 4 HOH A 165 559 445 HOH HOH . E 4 HOH A 166 560 447 HOH HOH . E 4 HOH A 167 561 561 HOH HOH . E 4 HOH A 168 562 453 HOH HOH . E 4 HOH A 169 563 563 HOH HOH . E 4 HOH A 170 564 454 HOH HOH . E 4 HOH A 171 565 565 HOH HOH . E 4 HOH A 172 566 462 HOH HOH . E 4 HOH A 173 567 465 HOH HOH . E 4 HOH A 174 568 466 HOH HOH . E 4 HOH A 175 569 467 HOH HOH . E 4 HOH A 176 570 468 HOH HOH . E 4 HOH A 177 571 471 HOH HOH . E 4 HOH A 178 572 572 HOH HOH . E 4 HOH A 179 573 573 HOH HOH . E 4 HOH A 180 574 574 HOH HOH . E 4 HOH A 181 575 472 HOH HOH . E 4 HOH A 182 576 473 HOH HOH . E 4 HOH A 183 577 477 HOH HOH . E 4 HOH A 184 578 578 HOH HOH . E 4 HOH A 185 579 579 HOH HOH . E 4 HOH A 186 580 478 HOH HOH . E 4 HOH A 187 581 581 HOH HOH . E 4 HOH A 188 582 582 HOH HOH . E 4 HOH A 189 583 583 HOH HOH . E 4 HOH A 190 584 481 HOH HOH . E 4 HOH A 191 585 483 HOH HOH . E 4 HOH A 192 586 586 HOH HOH . E 4 HOH A 193 587 484 HOH HOH . E 4 HOH A 194 588 488 HOH HOH . E 4 HOH A 195 589 589 HOH HOH . E 4 HOH A 196 590 490 HOH HOH . E 4 HOH A 197 591 491 HOH HOH . E 4 HOH A 198 592 493 HOH HOH . E 4 HOH A 199 593 500 HOH HOH . E 4 HOH A 200 594 503 HOH HOH . E 4 HOH A 201 595 506 HOH HOH . E 4 HOH A 202 596 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O27 CC3 . . . D 3 -0.904 34.551 -1.714 1 64.54 ? O27 CC3 394 A 1 HETATM 2 C C26 CC3 . . . D 3 -0.828 35.364 -2.632 1 62.42 ? C26 CC3 394 A 1 HETATM 3 C C28 CC3 . . . D 3 0.068 36.568 -2.484 1 62.93 ? C28 CC3 394 A 1 HETATM 4 C C30 CC3 . . . D 3 -0.735 37.868 -2.54 1 63.74 ? C30 CC3 394 A 1 HETATM 5 C C29 CC3 . . . D 3 -0.258 37.321 -1.199 1 63.41 ? C29 CC3 394 A 1 HETATM 6 N N25 CC3 . . . D 3 -1.482 35.248 -3.799 1 59.47 ? N25 CC3 394 A 1 HETATM 7 C C21 CC3 . . . D 3 -2.27 34.202 -4.185 1 57.69 ? C21 CC3 394 A 1 HETATM 8 C C20 CC3 . . . D 3 -2.474 34.002 -5.547 1 57.24 ? C20 CC3 394 A 1 HETATM 9 C C22 CC3 . . . D 3 -2.903 33.345 -3.28 1 57.2 ? C22 CC3 394 A 1 HETATM 10 C C23 CC3 . . . D 3 -3.711 32.304 -3.729 1 56.65 ? C23 CC3 394 A 1 HETATM 11 C C24 CC3 . . . D 3 -3.902 32.12 -5.1 1 57.38 ? C24 CC3 394 A 1 HETATM 12 C C19 CC3 . . . D 3 -3.285 32.97 -6.017 1 57.21 ? C19 CC3 394 A 1 HETATM 13 N N18 CC3 . . . D 3 -3.42 32.855 -7.363 1 58.73 ? N18 CC3 394 A 1 HETATM 14 C C16 CC3 . . . D 3 -4.099 31.926 -8.081 1 58.14 ? C16 CC3 394 A 1 HETATM 15 N N15 CC3 . . . D 3 -4.04 32.02 -9.43 1 58.75 ? N15 CC3 394 A 1 HETATM 16 C C14 CC3 . . . D 3 -4.68 31.147 -10.217 1 58.14 ? C14 CC3 394 A 1 HETATM 17 C C13 CC3 . . . D 3 -5.429 30.122 -9.651 1 59.12 ? C13 CC3 394 A 1 HETATM 18 N N17 CC3 . . . D 3 -4.822 30.933 -7.506 1 58.92 ? N17 CC3 394 A 1 HETATM 19 C C12 CC3 . . . D 3 -5.495 30.026 -8.262 1 60.25 ? C12 CC3 394 A 1 HETATM 20 N N11 CC3 . . . D 3 -6.236 29.023 -7.724 1 62.82 ? N11 CC3 394 A 1 HETATM 21 C C1 CC3 . . . D 3 -6.5 28.806 -6.407 1 65.38 ? C1 CC3 394 A 1 HETATM 22 C C6 CC3 . . . D 3 -7.242 27.675 -6.075 1 66.76 ? C6 CC3 394 A 1 HETATM 23 C C5 CC3 . . . D 3 -7.548 27.385 -4.744 1 68.23 ? C5 CC3 394 A 1 HETATM 24 C C7 CC3 . . . D 3 -8.345 26.146 -4.414 1 68.18 ? C7 CC3 394 A 1 HETATM 25 F F10 CC3 . . . D 3 -9.193 25.86 -5.398 1 70.22 ? F10 CC3 394 A 1 HETATM 26 F F9 CC3 . . . D 3 -7.489 25.144 -4.283 1 69.6 ? F9 CC3 394 A 1 HETATM 27 F F8 CC3 . . . D 3 -9.025 26.311 -3.282 1 70.42 ? F8 CC3 394 A 1 HETATM 28 C C4 CC3 . . . D 3 -7.101 28.238 -3.728 1 66.64 ? C4 CC3 394 A 1 HETATM 29 C C3 CC3 . . . D 3 -6.359 29.371 -4.05 1 66.35 ? C3 CC3 394 A 1 HETATM 30 C C2 CC3 . . . D 3 -6.065 29.649 -5.382 1 66.16 ? C2 CC3 394 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 30 #