data_2NPF
#
_model_server_result.job_id            vlsFe2-bMD-bNcmEKAA7zw 
_model_server_result.datetime_utc      '2024-11-08 18:54:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2npf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1901}' 
#
_entry.id    2NPF 
#
_exptl.entry_id    2NPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              690.817 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7R,9S,10R)-2-(7-CARBOXYHEPTYL)-6-HYDROXY-10-METHOXY-9-METHYL-3-OXO-1,4,8-TRIOXASPIRO[4 .5]DEC-7-YL]OXY}METHYL)-9-FORMYL-13-ISOPROPYL-5-METHYLTETRACYCLO[7.4.0.02,11.04.8]TRIDEC-12-ENE-1-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.83 
_cell.angle_gamma         90 
_cell.entry_id            2NPF 
_cell.length_a            59.97 
_cell.length_b            159.12 
_cell.length_c            112.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C37 H54 O12' 
_chem_comp.formula_weight    690.817 
_chem_comp.id                MOU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,4R,5R,9S,11S)-2-({[(2S,5R,6R,7R,9S,10R)-2-(7-CARBOXYHEPTYL)-6-HYDROXY-10-METHOXY-9-METHYL-3-OXO-1,4,8-TRIOXASPIRO[4 .5]DEC-7-YL]OXY}METHYL)-9-FORMYL-13-ISOPROPYL-5-METHYLTETRACYCLO[7.4.0.02,11.04.8]TRIDEC-12-ENE-1-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MORINIAFUNGIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O3 MOU sing 280 n n 
C O MOU sing 281 n n 
C C32 MOU sing 282 n n 
C C31 MOU sing 283 n n 
O C1 MOU sing 284 n n 
C1 C2 MOU sing 285 n n 
C1 O37 MOU doub 286 n n 
C2 C38 MOU sing 287 n n 
C2 H2 MOU sing 288 n n 
C2 O3 MOU sing 289 n n 
C4 C5 MOU doub 290 n n 
C4 C20 MOU sing 291 n n 
C4 C9 MOU sing 292 n n 
C5 C6 MOU sing 293 n n 
C5 H5 MOU sing 294 n n 
C6 C7 MOU sing 295 n n 
C6 C10 MOU sing 296 n n 
C6 H6 MOU sing 297 n n 
C7 C8 MOU sing 298 n n 
C7 H71 MOU sing 299 n n 
C7 H72 MOU sing 300 n n 
C8 C14 MOU sing 301 n n 
C8 C11 MOU sing 302 n n 
C8 C9 MOU sing 303 n n 
C9 C10 MOU sing 304 n n 
C9 C23 MOU sing 305 n n 
C10 C26 MOU sing 306 n n 
C10 C13 MOU sing 307 n n 
C11 H11 MOU sing 308 n n 
C11 O12 MOU doub 309 n n 
C13 H131 MOU sing 310 n n 
C13 H132 MOU sing 311 n n 
C13 C15 MOU sing 312 n n 
C14 C18 MOU sing 313 n n 
C14 C15 MOU sing 314 n n 
C14 H14 MOU sing 315 n n 
C15 H15 MOU sing 316 n n 
C15 C16 MOU sing 317 n n 
C16 H16 MOU sing 318 n n 
C16 C19 MOU sing 319 n n 
C16 C17 MOU sing 320 n n 
C17 H171 MOU sing 321 n n 
C17 H172 MOU sing 322 n n 
C17 C18 MOU sing 323 n n 
C18 H181 MOU sing 324 n n 
C18 H182 MOU sing 325 n n 
C19 H191 MOU sing 326 n n 
C19 H192 MOU sing 327 n n 
C19 H193 MOU sing 328 n n 
C20 H20 MOU sing 329 n n 
C20 C21 MOU sing 330 n n 
C20 C22 MOU sing 331 n n 
C21 H211 MOU sing 332 n n 
C21 H212 MOU sing 333 n n 
C21 H213 MOU sing 334 n n 
C22 H221 MOU sing 335 n n 
C22 H222 MOU sing 336 n n 
C22 H223 MOU sing 337 n n 
C23 O24 MOU doub 338 n n 
C23 O25 MOU sing 339 n n 
O25 H25 MOU sing 340 n n 
C26 O27 MOU sing 341 n n 
C26 H261 MOU sing 342 n n 
C26 H262 MOU sing 343 n n 
O27 C28 MOU sing 344 n n 
C28 C32 MOU sing 345 n n 
C28 H28 MOU sing 346 n n 
C28 O29 MOU sing 347 n n 
O29 C30 MOU sing 348 n n 
C30 H30 MOU sing 349 n n 
C30 C34 MOU sing 350 n n 
C30 C31 MOU sing 351 n n 
C31 H31 MOU sing 352 n n 
C31 O35 MOU sing 353 n n 
C32 H32 MOU sing 354 n n 
C32 O33 MOU sing 355 n n 
O33 H33 MOU sing 356 n n 
C34 H341 MOU sing 357 n n 
C34 H342 MOU sing 358 n n 
C34 H343 MOU sing 359 n n 
O35 C36 MOU sing 360 n n 
C36 H361 MOU sing 361 n n 
C36 H362 MOU sing 362 n n 
C36 H363 MOU sing 363 n n 
C38 C39 MOU sing 364 n n 
C38 H381 MOU sing 365 n n 
C38 H382 MOU sing 366 n n 
C39 C40 MOU sing 367 n n 
C39 H391 MOU sing 368 n n 
C39 H392 MOU sing 369 n n 
C40 C41 MOU sing 370 n n 
C40 H401 MOU sing 371 n n 
C40 H402 MOU sing 372 n n 
C41 C42 MOU sing 373 n n 
C41 H411 MOU sing 374 n n 
C41 H412 MOU sing 375 n n 
C42 C43 MOU sing 376 n n 
C42 H421 MOU sing 377 n n 
C42 H422 MOU sing 378 n n 
C43 C44 MOU sing 379 n n 
C43 H431 MOU sing 380 n n 
C43 H432 MOU sing 381 n n 
C44 C45 MOU sing 382 n n 
C44 H441 MOU sing 383 n n 
C44 H442 MOU sing 384 n n 
C45 O46 MOU sing 385 n n 
C45 O47 MOU doub 386 n n 
O46 H46 MOU sing 387 n n 
#
_atom_sites.entry_id                     2NPF 
_atom_sites.fract_transf_matrix[1][1]    0.016675 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002293 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MOU A 1 901 901 MOU MOL . 
D 3 GDP A 1 902 902 GDP GDP . 
E 2 MOU B 1 1901 901 MOU MOL . 
F 3 GDP B 1 1902 902 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C MOU . . . E 2 3.229 9.823 95.145 1 58.04 ? C MOU 1901 B 1 
HETATM 2 O O MOU . . . E 2 3.223 11.216 94.944 1 59.91 ? O MOU 1901 B 1 
HETATM 3 C C1 MOU . . . E 2 1.952 11.668 94.965 1 61.25 ? C1 MOU 1901 B 1 
HETATM 4 C C2 MOU . . . E 2 1.017 10.567 95.388 1 59.93 ? C2 MOU 1901 B 1 
HETATM 5 O O3 MOU . . . E 2 1.885 9.418 95.437 1 59.97 ? O3 MOU 1901 B 1 
HETATM 6 C C4 MOU . . . E 2 4.235 4.533 100.467 1 54.22 ? C4 MOU 1901 B 1 
HETATM 7 C C5 MOU . . . E 2 4.252 5.892 100.89 1 54.64 ? C5 MOU 1901 B 1 
HETATM 8 C C6 MOU . . . E 2 5.678 6.393 100.448 1 54.61 ? C6 MOU 1901 B 1 
HETATM 9 C C7 MOU . . . E 2 6.68 5.867 101.552 1 53.98 ? C7 MOU 1901 B 1 
HETATM 10 C C8 MOU . . . E 2 6.949 4.424 100.929 1 54.47 ? C8 MOU 1901 B 1 
HETATM 11 C C9 MOU . . . E 2 5.694 4.383 99.773 1 55.6 ? C9 MOU 1901 B 1 
HETATM 12 C C10 MOU . . . E 2 5.873 5.706 99.043 1 54.73 ? C10 MOU 1901 B 1 
HETATM 13 C C11 MOU . . . E 2 6.858 3.329 102.025 1 54.89 ? C11 MOU 1901 B 1 
HETATM 14 O O12 MOU . . . E 2 6.09 3.293 102.988 1 56.03 ? O12 MOU 1901 B 1 
HETATM 15 C C13 MOU . . . E 2 7.299 5.92 98.295 1 53.22 ? C13 MOU 1901 B 1 
HETATM 16 C C14 MOU . . . E 2 8.309 4.297 100.133 1 54.12 ? C14 MOU 1901 B 1 
HETATM 17 C C15 MOU . . . E 2 8.54 5.587 99.211 1 53.41 ? C15 MOU 1901 B 1 
HETATM 18 C C16 MOU . . . E 2 9.891 5.245 98.548 1 53.3 ? C16 MOU 1901 B 1 
HETATM 19 C C17 MOU . . . E 2 10.664 4.589 99.733 1 53.55 ? C17 MOU 1901 B 1 
HETATM 20 C C18 MOU . . . E 2 9.65 4.297 100.854 1 53.1 ? C18 MOU 1901 B 1 
HETATM 21 C C19 MOU . . . E 2 9.795 4.238 97.375 1 51.26 ? C19 MOU 1901 B 1 
HETATM 22 C C20 MOU . . . E 2 3.147 3.505 100.616 1 53.04 ? C20 MOU 1901 B 1 
HETATM 23 C C21 MOU . . . E 2 2.448 3.621 101.982 1 52.67 ? C21 MOU 1901 B 1 
HETATM 24 C C22 MOU . . . E 2 2.105 3.628 99.474 1 54.59 ? C22 MOU 1901 B 1 
HETATM 25 C C23 MOU . . . E 2 5.713 2.993 98.928 1 57.59 ? C23 MOU 1901 B 1 
HETATM 26 O O24 MOU . . . E 2 5.55 1.905 99.603 1 60.53 ? O24 MOU 1901 B 1 
HETATM 27 O O25 MOU . . . E 2 5.874 3.051 97.664 1 58.89 ? O25 MOU 1901 B 1 
HETATM 28 C C26 MOU . . . E 2 4.929 6.119 97.842 1 54.15 ? C26 MOU 1901 B 1 
HETATM 29 O O27 MOU . . . E 2 4.945 7.543 97.631 1 56.13 ? O27 MOU 1901 B 1 
HETATM 30 C C28 MOU . . . E 2 4.11 7.931 96.518 1 55.19 ? C28 MOU 1901 B 1 
HETATM 31 O O29 MOU . . . E 2 4.568 7.288 95.231 1 55.06 ? O29 MOU 1901 B 1 
HETATM 32 C C30 MOU . . . E 2 3.783 7.608 94.078 1 54.27 ? C30 MOU 1901 B 1 
HETATM 33 C C31 MOU . . . E 2 3.782 9.119 93.866 1 57.43 ? C31 MOU 1901 B 1 
HETATM 34 C C32 MOU . . . E 2 4.148 9.457 96.356 1 55.9 ? C32 MOU 1901 B 1 
HETATM 35 O O33 MOU . . . E 2 5.503 9.829 96.12 1 53.58 ? O33 MOU 1901 B 1 
HETATM 36 C C34 MOU . . . E 2 4.346 6.9 92.864 1 51.41 ? C34 MOU 1901 B 1 
HETATM 37 O O35 MOU . . . E 2 2.957 9.437 92.721 1 57.27 ? O35 MOU 1901 B 1 
HETATM 38 C C36 MOU . . . E 2 3.478 10.44 91.844 1 59.46 ? C36 MOU 1901 B 1 
HETATM 39 O O37 MOU . . . E 2 1.655 12.81 94.656 1 66.03 ? O37 MOU 1901 B 1 
HETATM 40 C C38 MOU . . . E 2 0.493 10.914 96.755 1 59.44 ? C38 MOU 1901 B 1 
HETATM 41 C C39 MOU . . . E 2 -0.44 9.977 97.448 1 58.96 ? C39 MOU 1901 B 1 
HETATM 42 C C40 MOU . . . E 2 -0.721 10.643 98.765 1 57.78 ? C40 MOU 1901 B 1 
HETATM 43 C C41 MOU . . . E 2 -1.603 9.865 99.635 1 57.7 ? C41 MOU 1901 B 1 
HETATM 44 C C42 MOU . . . E 2 -1.798 10.631 100.909 1 58.46 ? C42 MOU 1901 B 1 
HETATM 45 C C43 MOU . . . E 2 -2.676 9.845 101.855 1 61.04 ? C43 MOU 1901 B 1 
HETATM 46 C C44 MOU . . . E 2 -3.752 10.698 102.531 1 61.86 ? C44 MOU 1901 B 1 
HETATM 47 C C45 MOU . . . E 2 -5.045 9.969 102.921 1 63.3 ? C45 MOU 1901 B 1 
HETATM 48 O O46 MOU . . . E 2 -5.873 10.739 103.483 1 62.58 ? O46 MOU 1901 B 1 
HETATM 49 O O47 MOU . . . E 2 -5.168 8.702 102.663 1 62.6 ? O47 MOU 1901 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           455 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           49 
#