data_2NPG # _model_server_result.job_id o1eErEFhtAgZd1iOKmWgjw _model_server_result.datetime_utc '2024-11-04 22:38:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2npg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 2NPG # _exptl.entry_id 2NPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NPG _cell.length_a 109.59 _cell.length_b 109.59 _cell.length_c 84.469 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 109.59 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 54.795 94.907724 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 2NPG _atom_sites.fract_transf_matrix[1][1] 0.009125 _atom_sites.fract_transf_matrix[1][2] 0.005268 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 503 503 SO4 SO4 . D 3 ACT A 1 601 601 ACT ACT . E 2 SO4 A 1 701 1 SO4 SO4 . F 4 GOL A 1 801 1 GOL GOL . G 5 HOH A 1 802 90 HOH HOH . G 5 HOH A 2 803 92 HOH HOH . G 5 HOH A 3 804 94 HOH HOH . G 5 HOH A 4 805 96 HOH HOH . G 5 HOH A 5 806 98 HOH HOH . G 5 HOH A 6 807 99 HOH HOH . G 5 HOH A 7 808 100 HOH HOH . G 5 HOH A 8 809 101 HOH HOH . G 5 HOH A 9 810 104 HOH HOH . G 5 HOH A 10 811 106 HOH HOH . G 5 HOH A 11 812 109 HOH HOH . G 5 HOH A 12 813 110 HOH HOH . G 5 HOH A 13 814 111 HOH HOH . G 5 HOH A 14 815 112 HOH HOH . G 5 HOH A 15 816 113 HOH HOH . G 5 HOH A 16 817 116 HOH HOH . G 5 HOH A 17 818 117 HOH HOH . G 5 HOH A 18 819 118 HOH HOH . G 5 HOH A 19 820 149 HOH HOH . G 5 HOH A 20 821 150 HOH HOH . G 5 HOH A 21 822 151 HOH HOH . G 5 HOH A 22 823 152 HOH HOH . G 5 HOH A 23 824 153 HOH HOH . G 5 HOH A 24 825 154 HOH HOH . G 5 HOH A 25 826 157 HOH HOH . G 5 HOH A 26 827 158 HOH HOH . G 5 HOH A 27 828 159 HOH HOH . G 5 HOH A 28 829 161 HOH HOH . G 5 HOH A 29 830 163 HOH HOH . G 5 HOH A 30 831 177 HOH HOH . G 5 HOH A 31 832 181 HOH HOH . G 5 HOH A 32 833 187 HOH HOH . G 5 HOH A 33 834 202 HOH HOH . G 5 HOH A 34 835 204 HOH HOH . G 5 HOH A 35 836 208 HOH HOH . G 5 HOH A 36 837 209 HOH HOH . G 5 HOH A 37 838 3 HOH HOH . G 5 HOH A 38 839 4 HOH HOH . G 5 HOH A 39 840 6 HOH HOH . G 5 HOH A 40 841 9 HOH HOH . G 5 HOH A 41 842 11 HOH HOH . G 5 HOH A 42 843 12 HOH HOH . G 5 HOH A 43 844 14 HOH HOH . G 5 HOH A 44 845 17 HOH HOH . G 5 HOH A 45 846 18 HOH HOH . G 5 HOH A 46 847 19 HOH HOH . G 5 HOH A 47 848 21 HOH HOH . G 5 HOH A 48 849 22 HOH HOH . G 5 HOH A 49 850 24 HOH HOH . G 5 HOH A 50 851 26 HOH HOH . G 5 HOH A 51 852 27 HOH HOH . G 5 HOH A 52 853 29 HOH HOH . G 5 HOH A 53 854 31 HOH HOH . G 5 HOH A 54 855 32 HOH HOH . G 5 HOH A 55 856 33 HOH HOH . G 5 HOH A 56 857 35 HOH HOH . G 5 HOH A 57 858 36 HOH HOH . G 5 HOH A 58 859 40 HOH HOH . G 5 HOH A 59 860 41 HOH HOH . G 5 HOH A 60 861 42 HOH HOH . G 5 HOH A 61 862 43 HOH HOH . G 5 HOH A 62 863 45 HOH HOH . G 5 HOH A 63 864 50 HOH HOH . G 5 HOH A 64 865 54 HOH HOH . G 5 HOH A 65 866 55 HOH HOH . G 5 HOH A 66 867 56 HOH HOH . G 5 HOH A 67 868 58 HOH HOH . G 5 HOH A 68 869 68 HOH HOH . G 5 HOH A 69 870 71 HOH HOH . G 5 HOH A 70 871 72 HOH HOH . G 5 HOH A 71 872 77 HOH HOH . G 5 HOH A 72 873 2 HOH HOH . G 5 HOH A 73 874 9 HOH HOH . G 5 HOH A 74 875 10 HOH HOH . G 5 HOH A 75 876 11 HOH HOH . G 5 HOH A 76 877 1 HOH HOH . G 5 HOH A 77 878 7 HOH HOH . G 5 HOH A 78 879 8 HOH HOH . G 5 HOH A 79 880 9 HOH HOH . G 5 HOH A 80 881 10 HOH HOH . G 5 HOH A 81 882 11 HOH HOH . G 5 HOH A 82 883 1 HOH HOH . G 5 HOH A 83 884 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 44.333 16.03 27.147 1 79.42 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . F 4 44.114 14.913 26.308 1 71.35 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . F 4 44.485 15.63 28.623 1 80.55 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . F 4 45.382 14.544 28.793 1 80.39 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . F 4 44.914 16.825 29.483 1 79.62 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . F 4 43.803 17.644 29.815 1 79.17 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #