data_2NPI # _model_server_result.job_id ipceaZ_QCffaYThdGtMDkA _model_server_result.datetime_utc '2024-11-25 18:45:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2npi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2500}' # _entry.id 2NPI # _exptl.entry_id 2NPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NPI _cell.length_a 88.967 _cell.length_b 94.993 _cell.length_c 181.404 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 117 A THR 102 1_555 A N MSE 118 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 118 A MSE 103 1_555 A N LYS 119 A LYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C PHE 126 A PHE 111 1_555 A N MSE 127 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 127 A MSE 112 1_555 A N LEU 128 A LEU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C ARG 132 A ARG 117 1_555 A N MSE 133 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 133 A MSE 118 1_555 A N SER 134 A SER 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C PRO 220 A PRO 205 1_555 A N MSE 221 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 221 A MSE 206 1_555 A N VAL 222 A VAL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C ILE 291 A ILE 276 1_555 A N MSE 292 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 292 A MSE 277 1_555 A N LEU 293 A LEU 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ALA 450 A ALA 435 1_555 A N MSE 451 A MSE 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 451 A MSE 436 1_555 A N ILE 452 A ILE 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C THR 117 B THR 102 1_555 B N MSE 118 B MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 118 B MSE 103 1_555 B N LYS 119 B LYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C PHE 126 B PHE 111 1_555 B N MSE 127 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 127 B MSE 112 1_555 B N LEU 128 B LEU 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C ARG 132 B ARG 117 1_555 B N MSE 133 B MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C MSE 133 B MSE 118 1_555 B N SER 134 B SER 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C PRO 220 B PRO 205 1_555 B N MSE 221 B MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 B C MSE 221 B MSE 206 1_555 B N VAL 222 B VAL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C ILE 291 B ILE 276 1_555 B N MSE 292 B MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C MSE 292 B MSE 277 1_555 B N LEU 293 B LEU 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C ALA 450 B ALA 435 1_555 B N MSE 451 B MSE 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C MSE 451 B MSE 436 1_555 B N ILE 452 B ILE 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OG1 THR 152 A THR 137 1_555 E MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 F O1B ATP . A ATP 600 1_555 E MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 F O2G ATP . A ATP 600 1_555 E MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 B OG1 THR 152 B THR 137 1_555 G MG MG . B MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc5 H O2G ATP . B ATP 1600 1_555 G MG MG . B MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc6 H O1B ATP . B ATP 1600 1_555 G MG MG . B MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc7 G MG MG . B MG 2500 1_555 J O HOH . B HOH 2506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NPI _atom_sites.fract_transf_matrix[1][1] 0.01124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1500 500 MG MG . F 4 ATP A 1 600 600 ATP ATP . G 3 MG B 1 2500 500 MG MG . H 4 ATP B 1 1600 600 ATP ATP . I 5 HOH A 1 1501 1 HOH HOH . I 5 HOH A 2 1502 11 HOH HOH . I 5 HOH A 3 1503 12 HOH HOH . I 5 HOH A 4 1504 14 HOH HOH . I 5 HOH A 5 1505 17 HOH HOH . I 5 HOH A 6 1506 19 HOH HOH . I 5 HOH A 7 1507 20 HOH HOH . I 5 HOH A 8 1508 21 HOH HOH . I 5 HOH A 9 1509 22 HOH HOH . I 5 HOH A 10 1510 25 HOH HOH . I 5 HOH A 11 1511 28 HOH HOH . I 5 HOH A 12 1512 29 HOH HOH . I 5 HOH A 13 1513 31 HOH HOH . I 5 HOH A 14 1514 34 HOH HOH . I 5 HOH A 15 1515 38 HOH HOH . I 5 HOH A 16 1516 43 HOH HOH . I 5 HOH A 17 1517 44 HOH HOH . I 5 HOH A 18 1518 46 HOH HOH . I 5 HOH A 19 1519 47 HOH HOH . I 5 HOH A 20 1520 52 HOH HOH . I 5 HOH A 21 1521 55 HOH HOH . I 5 HOH A 22 1522 57 HOH HOH . I 5 HOH A 23 1523 62 HOH HOH . I 5 HOH A 24 1524 64 HOH HOH . I 5 HOH A 25 1525 65 HOH HOH . I 5 HOH A 26 1526 67 HOH HOH . I 5 HOH A 27 1527 72 HOH HOH . I 5 HOH A 28 1528 78 HOH HOH . I 5 HOH A 29 1529 80 HOH HOH . I 5 HOH A 30 1530 84 HOH HOH . I 5 HOH A 31 1531 87 HOH HOH . I 5 HOH A 32 1532 90 HOH HOH . I 5 HOH A 33 1533 92 HOH HOH . I 5 HOH A 34 1534 93 HOH HOH . I 5 HOH A 35 1535 95 HOH HOH . I 5 HOH A 36 1536 97 HOH HOH . I 5 HOH A 37 1537 98 HOH HOH . I 5 HOH A 38 1538 101 HOH HOH . I 5 HOH A 39 1539 103 HOH HOH . I 5 HOH A 40 1540 108 HOH HOH . I 5 HOH A 41 1541 110 HOH HOH . I 5 HOH A 42 1542 111 HOH HOH . I 5 HOH A 43 1543 120 HOH HOH . I 5 HOH A 44 1544 122 HOH HOH . I 5 HOH A 45 1545 127 HOH HOH . I 5 HOH A 46 1546 134 HOH HOH . I 5 HOH A 47 1547 137 HOH HOH . I 5 HOH A 48 1548 139 HOH HOH . I 5 HOH A 49 1549 140 HOH HOH . I 5 HOH A 50 1550 141 HOH HOH . I 5 HOH A 51 1551 144 HOH HOH . I 5 HOH A 52 1552 146 HOH HOH . I 5 HOH A 53 1553 147 HOH HOH . I 5 HOH A 54 1554 149 HOH HOH . I 5 HOH A 55 1555 151 HOH HOH . I 5 HOH A 56 1556 154 HOH HOH . I 5 HOH A 57 1557 155 HOH HOH . J 5 HOH B 1 2501 2 HOH HOH . J 5 HOH B 2 2502 3 HOH HOH . J 5 HOH B 3 2503 4 HOH HOH . J 5 HOH B 4 2504 5 HOH HOH . J 5 HOH B 5 2505 6 HOH HOH . J 5 HOH B 6 2506 8 HOH HOH . J 5 HOH B 7 2507 9 HOH HOH . J 5 HOH B 8 2508 10 HOH HOH . J 5 HOH B 9 2509 13 HOH HOH . J 5 HOH B 10 2510 15 HOH HOH . J 5 HOH B 11 2511 18 HOH HOH . J 5 HOH B 12 2512 23 HOH HOH . J 5 HOH B 13 2513 24 HOH HOH . J 5 HOH B 14 2514 26 HOH HOH . J 5 HOH B 15 2515 27 HOH HOH . J 5 HOH B 16 2516 30 HOH HOH . J 5 HOH B 17 2517 32 HOH HOH . J 5 HOH B 18 2518 33 HOH HOH . J 5 HOH B 19 2519 35 HOH HOH . J 5 HOH B 20 2520 36 HOH HOH . J 5 HOH B 21 2521 37 HOH HOH . J 5 HOH B 22 2522 39 HOH HOH . J 5 HOH B 23 2523 40 HOH HOH . J 5 HOH B 24 2524 41 HOH HOH . J 5 HOH B 25 2525 42 HOH HOH . J 5 HOH B 26 2526 45 HOH HOH . J 5 HOH B 27 2527 48 HOH HOH . J 5 HOH B 28 2528 50 HOH HOH . J 5 HOH B 29 2529 53 HOH HOH . J 5 HOH B 30 2530 54 HOH HOH . J 5 HOH B 31 2531 56 HOH HOH . J 5 HOH B 32 2532 58 HOH HOH . J 5 HOH B 33 2533 59 HOH HOH . J 5 HOH B 34 2534 60 HOH HOH . J 5 HOH B 35 2535 61 HOH HOH . J 5 HOH B 36 2536 66 HOH HOH . J 5 HOH B 37 2537 68 HOH HOH . J 5 HOH B 38 2538 69 HOH HOH . J 5 HOH B 39 2539 70 HOH HOH . J 5 HOH B 40 2540 73 HOH HOH . J 5 HOH B 41 2541 77 HOH HOH . J 5 HOH B 42 2542 81 HOH HOH . J 5 HOH B 43 2543 83 HOH HOH . J 5 HOH B 44 2544 85 HOH HOH . J 5 HOH B 45 2545 86 HOH HOH . J 5 HOH B 46 2546 88 HOH HOH . J 5 HOH B 47 2547 89 HOH HOH . J 5 HOH B 48 2548 91 HOH HOH . J 5 HOH B 49 2549 94 HOH HOH . J 5 HOH B 50 2550 96 HOH HOH . J 5 HOH B 51 2551 99 HOH HOH . J 5 HOH B 52 2552 100 HOH HOH . J 5 HOH B 53 2553 102 HOH HOH . J 5 HOH B 54 2554 104 HOH HOH . J 5 HOH B 55 2555 105 HOH HOH . J 5 HOH B 56 2556 106 HOH HOH . J 5 HOH B 57 2557 112 HOH HOH . J 5 HOH B 58 2558 114 HOH HOH . J 5 HOH B 59 2559 115 HOH HOH . J 5 HOH B 60 2560 117 HOH HOH . J 5 HOH B 61 2561 118 HOH HOH . J 5 HOH B 62 2562 119 HOH HOH . J 5 HOH B 63 2563 121 HOH HOH . J 5 HOH B 64 2564 124 HOH HOH . J 5 HOH B 65 2565 125 HOH HOH . J 5 HOH B 66 2566 126 HOH HOH . J 5 HOH B 67 2567 128 HOH HOH . J 5 HOH B 68 2568 129 HOH HOH . J 5 HOH B 69 2569 130 HOH HOH . J 5 HOH B 70 2570 131 HOH HOH . J 5 HOH B 71 2571 132 HOH HOH . J 5 HOH B 72 2572 133 HOH HOH . J 5 HOH B 73 2573 135 HOH HOH . J 5 HOH B 74 2574 142 HOH HOH . J 5 HOH B 75 2575 143 HOH HOH . J 5 HOH B 76 2576 148 HOH HOH . J 5 HOH B 77 2577 153 HOH HOH . K 5 HOH C 1 16 16 HOH HOH . K 5 HOH C 2 71 71 HOH HOH . K 5 HOH C 3 75 75 HOH HOH . K 5 HOH C 4 76 76 HOH HOH . K 5 HOH C 5 79 79 HOH HOH . K 5 HOH C 6 113 113 HOH HOH . K 5 HOH C 7 136 136 HOH HOH . L 5 HOH D 1 51 51 HOH HOH . L 5 HOH D 2 63 63 HOH HOH . L 5 HOH D 3 82 82 HOH HOH . L 5 HOH D 4 107 107 HOH HOH . L 5 HOH D 5 109 109 HOH HOH . L 5 HOH D 6 123 123 HOH HOH . L 5 HOH D 7 138 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.437 _atom_site.Cartn_y 40.454 _atom_site.Cartn_z 89.687 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2500 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #