data_2NPK # _model_server_result.job_id IJ2XOsB2XQNaxIWVAepPqA _model_server_result.datetime_utc '2025-01-09 22:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2npk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 2NPK # _exptl.entry_id 2NPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NPK _cell.length_a 109.917 _cell.length_b 109.917 _cell.length_c 84.203 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 109.917 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 54.9585 95.190914 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 2NPK _atom_sites.fract_transf_matrix[1][1] 0.009098 _atom_sites.fract_transf_matrix[1][2] 0.005253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 3 ACT A 1 601 601 ACT ACT . D 2 SO4 A 1 901 1 SO4 SO4 . E 4 IMD A 1 701 1 IMD IMD . F 5 GOL A 1 801 1 GOL GOL . G 6 HOH A 1 902 90 HOH HOH . G 6 HOH A 2 903 92 HOH HOH . G 6 HOH A 3 904 94 HOH HOH . G 6 HOH A 4 905 96 HOH HOH . G 6 HOH A 5 906 98 HOH HOH . G 6 HOH A 6 907 99 HOH HOH . G 6 HOH A 7 908 100 HOH HOH . G 6 HOH A 8 909 101 HOH HOH . G 6 HOH A 9 910 104 HOH HOH . G 6 HOH A 10 911 105 HOH HOH . G 6 HOH A 11 912 106 HOH HOH . G 6 HOH A 12 913 107 HOH HOH . G 6 HOH A 13 914 108 HOH HOH . G 6 HOH A 14 915 109 HOH HOH . G 6 HOH A 15 916 110 HOH HOH . G 6 HOH A 16 917 111 HOH HOH . G 6 HOH A 17 918 112 HOH HOH . G 6 HOH A 18 919 113 HOH HOH . G 6 HOH A 19 920 116 HOH HOH . G 6 HOH A 20 921 117 HOH HOH . G 6 HOH A 21 922 118 HOH HOH . G 6 HOH A 22 923 136 HOH HOH . G 6 HOH A 23 924 141 HOH HOH . G 6 HOH A 24 925 149 HOH HOH . G 6 HOH A 25 926 150 HOH HOH . G 6 HOH A 26 927 151 HOH HOH . G 6 HOH A 27 928 152 HOH HOH . G 6 HOH A 28 929 153 HOH HOH . G 6 HOH A 29 930 154 HOH HOH . G 6 HOH A 30 931 157 HOH HOH . G 6 HOH A 31 932 158 HOH HOH . G 6 HOH A 32 933 159 HOH HOH . G 6 HOH A 33 934 161 HOH HOH . G 6 HOH A 34 935 163 HOH HOH . G 6 HOH A 35 936 175 HOH HOH . G 6 HOH A 36 937 177 HOH HOH . G 6 HOH A 37 938 181 HOH HOH . G 6 HOH A 38 939 187 HOH HOH . G 6 HOH A 39 940 202 HOH HOH . G 6 HOH A 40 941 204 HOH HOH . G 6 HOH A 41 942 208 HOH HOH . G 6 HOH A 42 943 209 HOH HOH . G 6 HOH A 43 944 1 HOH HOH . G 6 HOH A 44 945 2 HOH HOH . G 6 HOH A 45 946 3 HOH HOH . G 6 HOH A 46 947 4 HOH HOH . G 6 HOH A 47 948 5 HOH HOH . G 6 HOH A 48 949 7 HOH HOH . G 6 HOH A 49 950 9 HOH HOH . G 6 HOH A 50 951 11 HOH HOH . G 6 HOH A 51 952 12 HOH HOH . G 6 HOH A 52 953 13 HOH HOH . G 6 HOH A 53 954 14 HOH HOH . G 6 HOH A 54 955 15 HOH HOH . G 6 HOH A 55 956 16 HOH HOH . G 6 HOH A 56 957 17 HOH HOH . G 6 HOH A 57 958 18 HOH HOH . G 6 HOH A 58 959 19 HOH HOH . G 6 HOH A 59 960 20 HOH HOH . G 6 HOH A 60 961 21 HOH HOH . G 6 HOH A 61 962 22 HOH HOH . G 6 HOH A 62 963 23 HOH HOH . G 6 HOH A 63 964 24 HOH HOH . G 6 HOH A 64 965 25 HOH HOH . G 6 HOH A 65 966 26 HOH HOH . G 6 HOH A 66 967 27 HOH HOH . G 6 HOH A 67 968 28 HOH HOH . G 6 HOH A 68 969 29 HOH HOH . G 6 HOH A 69 970 30 HOH HOH . G 6 HOH A 70 971 31 HOH HOH . G 6 HOH A 71 972 32 HOH HOH . G 6 HOH A 72 973 33 HOH HOH . G 6 HOH A 73 974 35 HOH HOH . G 6 HOH A 74 975 36 HOH HOH . G 6 HOH A 75 976 37 HOH HOH . G 6 HOH A 76 977 38 HOH HOH . G 6 HOH A 77 978 39 HOH HOH . G 6 HOH A 78 979 40 HOH HOH . G 6 HOH A 79 980 41 HOH HOH . G 6 HOH A 80 981 42 HOH HOH . G 6 HOH A 81 982 43 HOH HOH . G 6 HOH A 82 983 44 HOH HOH . G 6 HOH A 83 984 45 HOH HOH . G 6 HOH A 84 985 46 HOH HOH . G 6 HOH A 85 986 47 HOH HOH . G 6 HOH A 86 987 48 HOH HOH . G 6 HOH A 87 988 49 HOH HOH . G 6 HOH A 88 989 50 HOH HOH . G 6 HOH A 89 990 51 HOH HOH . G 6 HOH A 90 991 52 HOH HOH . G 6 HOH A 91 992 53 HOH HOH . G 6 HOH A 92 993 54 HOH HOH . G 6 HOH A 93 994 56 HOH HOH . G 6 HOH A 94 995 57 HOH HOH . G 6 HOH A 95 996 58 HOH HOH . G 6 HOH A 96 997 59 HOH HOH . G 6 HOH A 97 998 60 HOH HOH . G 6 HOH A 98 999 61 HOH HOH . G 6 HOH A 99 1000 62 HOH HOH . G 6 HOH A 100 1001 63 HOH HOH . G 6 HOH A 101 1002 64 HOH HOH . G 6 HOH A 102 1003 65 HOH HOH . G 6 HOH A 103 1004 66 HOH HOH . G 6 HOH A 104 1005 67 HOH HOH . G 6 HOH A 105 1006 70 HOH HOH . G 6 HOH A 106 1007 71 HOH HOH . G 6 HOH A 107 1008 72 HOH HOH . G 6 HOH A 108 1009 73 HOH HOH . G 6 HOH A 109 1010 75 HOH HOH . G 6 HOH A 110 1011 76 HOH HOH . G 6 HOH A 111 1012 78 HOH HOH . G 6 HOH A 112 1013 79 HOH HOH . G 6 HOH A 113 1014 80 HOH HOH . G 6 HOH A 114 1015 83 HOH HOH . G 6 HOH A 115 1016 84 HOH HOH . G 6 HOH A 116 1017 85 HOH HOH . G 6 HOH A 117 1018 2 HOH HOH . G 6 HOH A 118 1019 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 42.241 11.815 26.663 1 53.56 ? C ACT 601 A 1 HETATM 2 O O ACT . . . C 3 41.188 11.294 26.21 1 55.45 ? O ACT 601 A 1 HETATM 3 O OXT ACT . . . C 3 43.288 11.144 26.511 1 51.15 ? OXT ACT 601 A 1 HETATM 4 C CH3 ACT . . . C 3 42.226 13.154 27.339 1 52.25 ? CH3 ACT 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #