data_2NPP # _model_server_result.job_id VK5q9jdDMJNjknc_JdDUBA _model_server_result.datetime_utc '2024-11-04 20:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2npp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":502}' # _entry.id 2NPP # _exptl.entry_id 2NPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NPP _cell.length_a 109.26 _cell.length_b 159.05 _cell.length_c 269.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,H,K,L 1 1 A,B,C,G,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG CYS 269 C CYS 269 1_555 G CB DAM 7 X DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale2 F SG CYS 269 F CYS 269 1_555 H CB DAM 7 Y DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale3 G C DAL 1 X DAL 1 1_555 G N LEU 2 X LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 G N DAL 1 X DAL 1 1_555 G C DAM 7 X DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 G C ARG 4 X ARG 4 1_555 G N 1ZN 5 X 1ZN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 G C 1ZN 5 X 1ZN 5 1_555 G N FGA 6 X FGA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 G CD FGA 6 X FGA 6 1_555 G N DAM 7 X DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 H C DAL 1 Y DAL 1 1_555 H N LEU 2 Y LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 H N DAL 1 Y DAL 1 1_555 H C DAM 7 Y DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 H C ARG 4 Y ARG 4 1_555 H N 1ZN 5 Y 1ZN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 H C 1ZN 5 Y 1ZN 5 1_555 H N FGA 6 Y FGA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 H CD FGA 6 Y FGA 6 1_555 H N DAM 7 Y DAM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 C OD2 ASP 57 C ASP 57 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 C NE2 HIS 59 C HIS 59 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 C OD2 ASP 85 C ASP 85 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 C OD2 ASP 85 C ASP 85 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 C OD1 ASN 117 C ASN 117 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 C NE2 HIS 167 C HIS 167 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc7 C ND1 HIS 241 C HIS 241 1_555 I MN MN . C MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 I MN MN . C MN 501 1_555 J MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc9 F OD2 ASP 57 F ASP 57 1_555 L MN MN . F MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc10 F NE2 HIS 59 F HIS 59 1_555 L MN MN . F MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc11 F OD2 ASP 85 F ASP 85 1_555 K MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc12 F OD2 ASP 85 F ASP 85 1_555 L MN MN . F MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc13 F OD1 ASN 117 F ASN 117 1_555 K MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc14 F NE2 HIS 167 F HIS 167 1_555 K MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc15 F ND1 HIS 241 F HIS 241 1_555 K MN MN . F MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc16 K MN MN . F MN 501 1_555 L MN MN . F MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NPP _atom_sites.fract_transf_matrix[1][1] 0.009152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MN C 1 501 501 MN MN . J 5 MN C 1 502 502 MN MN . K 5 MN F 1 501 501 MN MN . L 5 MN F 1 502 502 MN MN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -3.903 _atom_site.Cartn_y 102.253 _atom_site.Cartn_z -44.808 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 139 _model_server_stats.parse_time_ms 109 _model_server_stats.create_model_time_ms 102 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #