data_2NQX # _model_server_result.job_id fWKQnnNu7AsukaIG4N1cbQ _model_server_result.datetime_utc '2024-12-02 07:39:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":705}' # _entry.id 2NQX # _exptl.entry_id 2NQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.74 _cell.angle_gamma 90 _cell.entry_id 2NQX _cell.length_a 54.53 _cell.length_b 80.549 _cell.length_c 78.031 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 1 NAG 2 n B NAG 2 B 2 NAG C 2 NAG 2 n B MAN 3 B 3 MAN C 10 MAN 3 n C NAG 1 C 1 NAG C 3 NAG 3 n C NAG 2 C 2 NAG C 4 NAG 2 n D NAG 1 D 1 NAG C 5 NAG 2 n D NAG 2 D 2 NAG C 6 NAG 2 n D MAN 3 D 3 MAN C 9 MAN 3 n E NAG 1 E 1 NAG C 7 NAG 3 n E NAG 2 E 2 NAG C 8 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 129 A CYS 129 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 133 A CYS 133 1_555 A SG CYS 157 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 237 A CYS 237 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 456 A CYS 456 1_555 A SG CYS 513 A CYS 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 554 A CYS 554 1_555 A SG CYS 579 A CYS 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 95 A ASN 95 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A OD2 ASP 108 A ASP 108 1_555 O CMD HEM . A HEM 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? covale ? covale3 A ND2 ASN 205 A ASN 205 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 A OE2 GLU 258 A GLU 258 1_555 O CMB HEM . A HEM 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? covale ? covale6 A ND2 ASN 332 A ASN 332 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A O ASP 110 A ASP 110 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc2 A OD1 ASP 110 A ASP 110 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc3 A O THR 184 A THR 184 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 A OG1 THR 184 A THR 184 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc5 A O PHE 186 A PHE 186 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 A OD1 ASP 188 A ASP 188 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc7 A OG SER 190 A SER 190 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc8 A NE2 HIS 351 A HIS 351 1_555 O FE HEM . A HEM 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NQX _atom_sites.fract_transf_matrix[1][1] 0.018339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA A 1 701 1 CA CA . G 5 IOD A 1 702 200 IOD IOD . H 5 IOD A 1 703 201 IOD IOD . I 5 IOD A 1 704 202 IOD IOD . J 5 IOD A 1 705 203 IOD IOD . K 5 IOD A 1 706 204 IOD IOD . L 5 IOD A 1 707 205 IOD IOD . M 5 IOD A 1 708 206 IOD IOD . N 6 CO3 A 1 688 688 CO3 CO3 . O 7 HEM A 1 709 605 HEM HEM . P 8 OSM A 1 710 2 OSM OSM . Q 9 HOH A 1 711 1 HOH HOH . Q 9 HOH A 2 712 2 HOH HOH . Q 9 HOH A 3 713 3 HOH HOH . Q 9 HOH A 4 714 4 HOH HOH . Q 9 HOH A 5 715 5 HOH HOH . Q 9 HOH A 6 716 6 HOH HOH . Q 9 HOH A 7 717 7 HOH HOH . Q 9 HOH A 8 718 8 HOH HOH . Q 9 HOH A 9 719 9 HOH HOH . Q 9 HOH A 10 720 10 HOH HOH . Q 9 HOH A 11 721 11 HOH HOH . Q 9 HOH A 12 722 12 HOH HOH . Q 9 HOH A 13 723 13 HOH HOH . Q 9 HOH A 14 724 14 HOH HOH . Q 9 HOH A 15 725 15 HOH HOH . Q 9 HOH A 16 726 16 HOH HOH . Q 9 HOH A 17 727 17 HOH HOH . Q 9 HOH A 18 728 18 HOH HOH . Q 9 HOH A 19 729 19 HOH HOH . Q 9 HOH A 20 730 20 HOH HOH . Q 9 HOH A 21 731 21 HOH HOH . Q 9 HOH A 22 732 22 HOH HOH . Q 9 HOH A 23 733 23 HOH HOH . Q 9 HOH A 24 734 24 HOH HOH . Q 9 HOH A 25 735 25 HOH HOH . Q 9 HOH A 26 736 26 HOH HOH . Q 9 HOH A 27 737 27 HOH HOH . Q 9 HOH A 28 738 28 HOH HOH . Q 9 HOH A 29 739 29 HOH HOH . Q 9 HOH A 30 740 30 HOH HOH . Q 9 HOH A 31 741 31 HOH HOH . Q 9 HOH A 32 742 32 HOH HOH . Q 9 HOH A 33 743 33 HOH HOH . Q 9 HOH A 34 744 34 HOH HOH . Q 9 HOH A 35 745 35 HOH HOH . Q 9 HOH A 36 746 36 HOH HOH . Q 9 HOH A 37 747 37 HOH HOH . Q 9 HOH A 38 748 38 HOH HOH . Q 9 HOH A 39 749 39 HOH HOH . Q 9 HOH A 40 750 40 HOH HOH . Q 9 HOH A 41 751 41 HOH HOH . Q 9 HOH A 42 752 42 HOH HOH . Q 9 HOH A 43 753 43 HOH HOH . Q 9 HOH A 44 754 44 HOH HOH . Q 9 HOH A 45 755 45 HOH HOH . Q 9 HOH A 46 756 46 HOH HOH . Q 9 HOH A 47 757 47 HOH HOH . Q 9 HOH A 48 758 48 HOH HOH . Q 9 HOH A 49 759 49 HOH HOH . Q 9 HOH A 50 760 80 HOH HOH . Q 9 HOH A 51 761 81 HOH HOH . Q 9 HOH A 52 762 82 HOH HOH . Q 9 HOH A 53 763 83 HOH HOH . Q 9 HOH A 54 764 84 HOH HOH . Q 9 HOH A 55 765 85 HOH HOH . Q 9 HOH A 56 766 86 HOH HOH . Q 9 HOH A 57 767 87 HOH HOH . Q 9 HOH A 58 768 88 HOH HOH . Q 9 HOH A 59 769 89 HOH HOH . Q 9 HOH A 60 770 90 HOH HOH . Q 9 HOH A 61 771 91 HOH HOH . Q 9 HOH A 62 772 92 HOH HOH . Q 9 HOH A 63 773 93 HOH HOH . Q 9 HOH A 64 774 94 HOH HOH . Q 9 HOH A 65 775 95 HOH HOH . Q 9 HOH A 66 776 96 HOH HOH . Q 9 HOH A 67 777 97 HOH HOH . Q 9 HOH A 68 778 98 HOH HOH . Q 9 HOH A 69 779 99 HOH HOH . Q 9 HOH A 70 780 100 HOH HOH . Q 9 HOH A 71 781 101 HOH HOH . Q 9 HOH A 72 782 102 HOH HOH . Q 9 HOH A 73 783 103 HOH HOH . Q 9 HOH A 74 784 104 HOH HOH . Q 9 HOH A 75 785 105 HOH HOH . Q 9 HOH A 76 786 106 HOH HOH . Q 9 HOH A 77 787 107 HOH HOH . Q 9 HOH A 78 788 108 HOH HOH . Q 9 HOH A 79 789 109 HOH HOH . Q 9 HOH A 80 790 110 HOH HOH . Q 9 HOH A 81 791 111 HOH HOH . Q 9 HOH A 82 792 112 HOH HOH . Q 9 HOH A 83 793 113 HOH HOH . Q 9 HOH A 84 794 114 HOH HOH . Q 9 HOH A 85 795 115 HOH HOH . Q 9 HOH A 86 796 116 HOH HOH . Q 9 HOH A 87 797 117 HOH HOH . Q 9 HOH A 88 798 118 HOH HOH . Q 9 HOH A 89 799 119 HOH HOH . Q 9 HOH A 90 800 120 HOH HOH . Q 9 HOH A 91 801 121 HOH HOH . Q 9 HOH A 92 802 122 HOH HOH . Q 9 HOH A 93 803 123 HOH HOH . Q 9 HOH A 94 804 124 HOH HOH . Q 9 HOH A 95 805 125 HOH HOH . Q 9 HOH A 96 806 126 HOH HOH . Q 9 HOH A 97 807 127 HOH HOH . Q 9 HOH A 98 808 128 HOH HOH . Q 9 HOH A 99 809 129 HOH HOH . Q 9 HOH A 100 810 130 HOH HOH . Q 9 HOH A 101 811 131 HOH HOH . Q 9 HOH A 102 812 132 HOH HOH . Q 9 HOH A 103 813 133 HOH HOH . Q 9 HOH A 104 814 134 HOH HOH . Q 9 HOH A 105 815 135 HOH HOH . Q 9 HOH A 106 816 136 HOH HOH . Q 9 HOH A 107 817 137 HOH HOH . Q 9 HOH A 108 818 138 HOH HOH . Q 9 HOH A 109 819 139 HOH HOH . Q 9 HOH A 110 820 140 HOH HOH . Q 9 HOH A 111 821 141 HOH HOH . Q 9 HOH A 112 822 142 HOH HOH . Q 9 HOH A 113 823 143 HOH HOH . Q 9 HOH A 114 824 144 HOH HOH . Q 9 HOH A 115 825 145 HOH HOH . Q 9 HOH A 116 826 146 HOH HOH . Q 9 HOH A 117 827 147 HOH HOH . Q 9 HOH A 118 828 148 HOH HOH . Q 9 HOH A 119 829 149 HOH HOH . Q 9 HOH A 120 830 150 HOH HOH . Q 9 HOH A 121 831 151 HOH HOH . Q 9 HOH A 122 832 152 HOH HOH . Q 9 HOH A 123 833 153 HOH HOH . Q 9 HOH A 124 834 154 HOH HOH . Q 9 HOH A 125 835 155 HOH HOH . Q 9 HOH A 126 836 156 HOH HOH . Q 9 HOH A 127 837 157 HOH HOH . Q 9 HOH A 128 838 158 HOH HOH . Q 9 HOH A 129 839 159 HOH HOH . Q 9 HOH A 130 840 160 HOH HOH . Q 9 HOH A 131 841 161 HOH HOH . Q 9 HOH A 132 842 162 HOH HOH . Q 9 HOH A 133 843 163 HOH HOH . Q 9 HOH A 134 844 164 HOH HOH . Q 9 HOH A 135 845 165 HOH HOH . Q 9 HOH A 136 846 166 HOH HOH . Q 9 HOH A 137 847 167 HOH HOH . Q 9 HOH A 138 848 168 HOH HOH . Q 9 HOH A 139 849 169 HOH HOH . Q 9 HOH A 140 850 170 HOH HOH . Q 9 HOH A 141 851 171 HOH HOH . Q 9 HOH A 142 852 172 HOH HOH . Q 9 HOH A 143 853 173 HOH HOH . Q 9 HOH A 144 854 174 HOH HOH . Q 9 HOH A 145 855 175 HOH HOH . Q 9 HOH A 146 856 176 HOH HOH . Q 9 HOH A 147 857 177 HOH HOH . Q 9 HOH A 148 858 178 HOH HOH . Q 9 HOH A 149 859 179 HOH HOH . Q 9 HOH A 150 860 180 HOH HOH . Q 9 HOH A 151 861 181 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -14.177 _atom_site.Cartn_y -7.015 _atom_site.Cartn_z 27.15 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 33.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 705 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #