data_2NR6 # _model_server_result.job_id l6U6QigjfPS2tdrQ1EeqwA _model_server_result.datetime_utc '2024-11-18 05:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 2NR6 # _exptl.entry_id 2NR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.83 _cell.angle_gamma 90 _cell.entry_id 2NR6 _cell.length_a 77.004 _cell.length_b 103.187 _cell.length_c 146.329 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,I,J,M,O,P 1 1 B,E,F,H,K,L,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 L N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 G 1 NAG K 501 NAG 4 n G NAG 2 G 2 NAG K 502 NAG 4 n H NAG 1 H 1 NAG I 501 NAG 4 n H NAG 2 H 2 NAG I 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 36 1_555 A SG CYS 131 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 48 A CYS 45 1_555 A SG CYS 53 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 55 A CYS 51 1_555 A SG CYS 116 A CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 241 A CYS 237 1_555 A SG CYS 252 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 256 A CYS 249 1_555 A SG CYS 289 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 39 B CYS 36 1_555 B SG CYS 131 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 48 B CYS 45 1_555 B SG CYS 53 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 55 B CYS 51 1_555 B SG CYS 116 B CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 241 B CYS 237 1_555 B SG CYS 252 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 B SG CYS 256 B CYS 249 1_555 B SG CYS 289 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf12 C SG CYS 134 C CYS 134 1_555 C SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf14 D SG CYS 143 D CYS 143 1_555 D SG CYS 198 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf16 E SG CYS 134 E CYS 134 1_555 E SG CYS 194 E CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf17 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf18 F SG CYS 143 F CYS 143 1_555 F SG CYS 198 F CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 275 A ASN 268 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A C PRO 295 A PRO 288 1_555 A N CSX 296 A CSX 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C CSX 296 A CSX 289 1_555 A N GLY 297 A GLY 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A ND2 ASN 320 A ASN 317 1_555 I C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B ND2 ASN 275 B ASN 268 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 B C PRO 295 B PRO 288 1_555 B N CSX 296 B CSX 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C CSX 296 B CSX 289 1_555 B N GLY 297 B GLY 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B ND2 ASN 320 B ASN 317 1_555 K C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A ND1 HIS 158 A HIS 155 1_555 J ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A NE2 HIS 166 A HIS 161 1_555 J ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc3 A OD1 ASP 306 A ASP 303 1_555 J ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? metalc ? metalc4 A OD1 ASP 310 A ASP 307 1_555 J ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 B ND1 HIS 158 B HIS 155 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 B NE2 HIS 166 B HIS 161 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc7 B OD1 ASP 306 B ASP 303 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc8 B OD1 ASP 310 B ASP 307 1_555 L ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NR6 _atom_sites.fract_transf_matrix[1][1] 0.012986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 NAG A 1 601 601 NAG NAG . J 6 ZN A 1 602 301 ZN ZN . K 5 NAG B 1 601 601 NAG NAG . L 6 ZN B 1 602 312 ZN ZN . M 7 HOH A 1 603 1 HOH HOH . M 7 HOH A 2 604 7 HOH HOH . M 7 HOH A 3 605 9 HOH HOH . M 7 HOH A 4 606 11 HOH HOH . M 7 HOH A 5 607 12 HOH HOH . M 7 HOH A 6 608 15 HOH HOH . M 7 HOH A 7 609 16 HOH HOH . M 7 HOH A 8 610 17 HOH HOH . M 7 HOH A 9 611 19 HOH HOH . M 7 HOH A 10 612 25 HOH HOH . M 7 HOH A 11 613 29 HOH HOH . M 7 HOH A 12 614 33 HOH HOH . M 7 HOH A 13 615 40 HOH HOH . M 7 HOH A 14 616 42 HOH HOH . M 7 HOH A 15 617 43 HOH HOH . M 7 HOH A 16 618 47 HOH HOH . M 7 HOH A 17 619 50 HOH HOH . M 7 HOH A 18 620 61 HOH HOH . M 7 HOH A 19 621 62 HOH HOH . M 7 HOH A 20 622 64 HOH HOH . M 7 HOH A 21 623 67 HOH HOH . M 7 HOH A 22 624 69 HOH HOH . M 7 HOH A 23 625 72 HOH HOH . M 7 HOH A 24 626 74 HOH HOH . M 7 HOH A 25 627 76 HOH HOH . M 7 HOH A 26 628 84 HOH HOH . M 7 HOH A 27 629 87 HOH HOH . M 7 HOH A 28 630 88 HOH HOH . M 7 HOH A 29 631 92 HOH HOH . M 7 HOH A 30 632 94 HOH HOH . M 7 HOH A 31 633 101 HOH HOH . M 7 HOH A 32 634 107 HOH HOH . N 7 HOH B 1 603 2 HOH HOH . N 7 HOH B 2 604 14 HOH HOH . N 7 HOH B 3 605 18 HOH HOH . N 7 HOH B 4 606 20 HOH HOH . N 7 HOH B 5 607 21 HOH HOH . N 7 HOH B 6 608 23 HOH HOH . N 7 HOH B 7 609 27 HOH HOH . N 7 HOH B 8 610 32 HOH HOH . N 7 HOH B 9 611 35 HOH HOH . N 7 HOH B 10 612 41 HOH HOH . N 7 HOH B 11 613 45 HOH HOH . N 7 HOH B 12 614 48 HOH HOH . N 7 HOH B 13 615 52 HOH HOH . N 7 HOH B 14 616 57 HOH HOH . N 7 HOH B 15 617 58 HOH HOH . N 7 HOH B 16 618 65 HOH HOH . N 7 HOH B 17 619 66 HOH HOH . N 7 HOH B 18 620 68 HOH HOH . N 7 HOH B 19 621 70 HOH HOH . N 7 HOH B 20 622 75 HOH HOH . N 7 HOH B 21 623 81 HOH HOH . N 7 HOH B 22 624 85 HOH HOH . N 7 HOH B 23 625 96 HOH HOH . N 7 HOH B 24 626 108 HOH HOH . N 7 HOH B 25 627 110 HOH HOH . N 7 HOH B 26 628 111 HOH HOH . O 7 HOH C 1 212 3 HOH HOH . O 7 HOH C 2 213 8 HOH HOH . O 7 HOH C 3 214 13 HOH HOH . O 7 HOH C 4 215 24 HOH HOH . O 7 HOH C 5 216 26 HOH HOH . O 7 HOH C 6 217 36 HOH HOH . O 7 HOH C 7 218 49 HOH HOH . O 7 HOH C 8 219 54 HOH HOH . O 7 HOH C 9 220 55 HOH HOH . O 7 HOH C 10 221 97 HOH HOH . O 7 HOH C 11 222 98 HOH HOH . O 7 HOH C 12 223 99 HOH HOH . O 7 HOH C 13 224 100 HOH HOH . P 7 HOH D 1 214 4 HOH HOH . P 7 HOH D 2 215 6 HOH HOH . P 7 HOH D 3 216 10 HOH HOH . P 7 HOH D 4 217 28 HOH HOH . P 7 HOH D 5 218 37 HOH HOH . P 7 HOH D 6 219 38 HOH HOH . P 7 HOH D 7 220 44 HOH HOH . P 7 HOH D 8 221 51 HOH HOH . P 7 HOH D 9 222 60 HOH HOH . P 7 HOH D 10 223 73 HOH HOH . P 7 HOH D 11 224 82 HOH HOH . P 7 HOH D 12 225 89 HOH HOH . P 7 HOH D 13 226 91 HOH HOH . P 7 HOH D 14 227 93 HOH HOH . P 7 HOH D 15 228 102 HOH HOH . P 7 HOH D 16 229 104 HOH HOH . P 7 HOH D 17 230 105 HOH HOH . P 7 HOH D 18 231 106 HOH HOH . P 7 HOH D 19 232 109 HOH HOH . Q 7 HOH E 1 212 31 HOH HOH . Q 7 HOH E 2 213 46 HOH HOH . Q 7 HOH E 3 214 53 HOH HOH . Q 7 HOH E 4 215 56 HOH HOH . Q 7 HOH E 5 216 59 HOH HOH . Q 7 HOH E 6 217 71 HOH HOH . Q 7 HOH E 7 218 77 HOH HOH . Q 7 HOH E 8 219 79 HOH HOH . Q 7 HOH E 9 220 83 HOH HOH . Q 7 HOH E 10 221 86 HOH HOH . Q 7 HOH E 11 222 90 HOH HOH . R 7 HOH F 1 214 5 HOH HOH . R 7 HOH F 2 215 22 HOH HOH . R 7 HOH F 3 216 34 HOH HOH . R 7 HOH F 4 217 39 HOH HOH . R 7 HOH F 5 218 63 HOH HOH . R 7 HOH F 6 219 78 HOH HOH . R 7 HOH F 7 220 80 HOH HOH . R 7 HOH F 8 221 95 HOH HOH . R 7 HOH F 9 222 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 6 _atom_site.Cartn_x 13.217 _atom_site.Cartn_y 16.91 _atom_site.Cartn_z -35.235 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #