data_2NR9 # _model_server_result.job_id iGd18S1VGt64Bg_316UGrA _model_server_result.datetime_utc '2024-12-29 10:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 2NR9 # _exptl.entry_id 2NR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.02 _cell.angle_gamma 90 _cell.entry_id 2NR9 _cell.length_a 121.288 _cell.length_b 35.047 _cell.length_c 52.931 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -12.823095 0 51.35425 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H17 O8 P' _chem_comp.formula_weight 284.2 _chem_comp.id PA6 _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O32 C31 PA6 doub 237 n n C31 O31 PA6 sing 238 n n C31 C32 PA6 sing 239 n n C32 C33 PA6 sing 240 n n C32 H321 PA6 sing 241 n n C32 H322 PA6 sing 242 n n C33 C34 PA6 sing 243 n n C33 H331 PA6 sing 244 n n C33 H332 PA6 sing 245 n n C34 C35 PA6 sing 246 n n C34 H341 PA6 sing 247 n n C34 H342 PA6 sing 248 n n C35 H351 PA6 sing 249 n n C35 H352 PA6 sing 250 n n C35 H353 PA6 sing 251 n n O31 C3 PA6 sing 252 n n C3 C2 PA6 sing 253 n n C3 H31 PA6 sing 254 n n C3 H32 PA6 sing 255 n n C2 O21 PA6 sing 256 n n C2 C1 PA6 sing 257 n n C2 H2 PA6 sing 258 n n O21 C21 PA6 sing 259 n n C21 O22 PA6 doub 260 n n C21 H21 PA6 sing 261 n n C1 O11 PA6 sing 262 n n C1 H11 PA6 sing 263 n n C1 H12 PA6 sing 264 n n O11 P PA6 sing 265 n n P O14 PA6 doub 266 n n P O13 PA6 sing 267 n n P O12 PA6 sing 268 n n O13 HO13 PA6 sing 269 n n O12 HO12 PA6 sing 270 n n # _atom_sites.entry_id 2NR9 _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002059 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PA6 A 1 201 1 PA6 PAG . C 2 PA6 A 1 202 2 PA6 PAG . D 2 PA6 A 1 203 3 PA6 PAG . E 3 PQE A 1 204 4 PQE POE . F 3 PQE A 1 205 5 PQE POE . G 4 HOH A 1 206 1 HOH HOH . G 4 HOH A 2 207 2 HOH HOH . G 4 HOH A 3 208 3 HOH HOH . G 4 HOH A 4 209 4 HOH HOH . G 4 HOH A 5 210 5 HOH HOH . G 4 HOH A 6 211 6 HOH HOH . G 4 HOH A 7 212 7 HOH HOH . G 4 HOH A 8 213 8 HOH HOH . G 4 HOH A 9 214 9 HOH HOH . G 4 HOH A 10 215 10 HOH HOH . G 4 HOH A 11 216 11 HOH HOH . G 4 HOH A 12 217 12 HOH HOH . G 4 HOH A 13 218 13 HOH HOH . G 4 HOH A 14 219 14 HOH HOH . G 4 HOH A 15 220 15 HOH HOH . G 4 HOH A 16 221 16 HOH HOH . G 4 HOH A 17 222 17 HOH HOH . G 4 HOH A 18 223 18 HOH HOH . G 4 HOH A 19 224 19 HOH HOH . G 4 HOH A 20 225 20 HOH HOH . G 4 HOH A 21 226 21 HOH HOH . G 4 HOH A 22 227 22 HOH HOH . G 4 HOH A 23 228 23 HOH HOH . G 4 HOH A 24 229 24 HOH HOH . G 4 HOH A 25 230 25 HOH HOH . G 4 HOH A 26 231 26 HOH HOH . G 4 HOH A 27 232 27 HOH HOH . G 4 HOH A 28 233 28 HOH HOH . G 4 HOH A 29 234 29 HOH HOH . G 4 HOH A 30 235 30 HOH HOH . G 4 HOH A 31 236 31 HOH HOH . G 4 HOH A 32 237 32 HOH HOH . G 4 HOH A 33 238 33 HOH HOH . G 4 HOH A 34 239 34 HOH HOH . G 4 HOH A 35 240 35 HOH HOH . G 4 HOH A 36 241 36 HOH HOH . G 4 HOH A 37 242 38 HOH HOH . G 4 HOH A 38 243 39 HOH HOH . G 4 HOH A 39 244 40 HOH HOH . G 4 HOH A 40 245 41 HOH HOH . G 4 HOH A 41 246 42 HOH HOH . G 4 HOH A 42 247 43 HOH HOH . G 4 HOH A 43 248 44 HOH HOH . G 4 HOH A 44 249 45 HOH HOH . G 4 HOH A 45 250 46 HOH HOH . G 4 HOH A 46 251 47 HOH HOH . G 4 HOH A 47 252 48 HOH HOH . G 4 HOH A 48 253 49 HOH HOH . G 4 HOH A 49 254 50 HOH HOH . G 4 HOH A 50 255 51 HOH HOH . G 4 HOH A 51 256 52 HOH HOH . G 4 HOH A 52 257 53 HOH HOH . G 4 HOH A 53 258 54 HOH HOH . G 4 HOH A 54 259 55 HOH HOH . G 4 HOH A 55 260 56 HOH HOH . G 4 HOH A 56 261 57 HOH HOH . G 4 HOH A 57 262 58 HOH HOH . G 4 HOH A 58 263 59 HOH HOH . G 4 HOH A 59 264 60 HOH HOH . G 4 HOH A 60 265 61 HOH HOH . G 4 HOH A 61 266 62 HOH HOH . G 4 HOH A 62 267 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O32 PA6 . . . C 2 -17.023 6.005 14.297 1 101.73 ? O32 PA6 202 A 1 HETATM 2 C C31 PA6 . . . C 2 -16.621 4.879 14.533 1 101.69 ? C31 PA6 202 A 1 HETATM 3 C C32 PA6 . . . C 2 -16.248 4.473 15.938 1 101.38 ? C32 PA6 202 A 1 HETATM 4 C C33 PA6 . . . C 2 -17.515 4.18 16.735 1 100.93 ? C33 PA6 202 A 1 HETATM 5 C C34 PA6 . . . C 2 -17.296 3.032 17.714 1 100.61 ? C34 PA6 202 A 1 HETATM 6 C C35 PA6 . . . C 2 -15.854 2.971 18.17 1 100.38 ? C35 PA6 202 A 1 HETATM 7 O O31 PA6 . . . C 2 -16.515 3.925 13.442 1 102.33 ? O31 PA6 202 A 1 HETATM 8 C C3 PA6 . . . C 2 -16.058 4.352 12.161 1 102.9 ? C3 PA6 202 A 1 HETATM 9 C C2 PA6 . . . C 2 -15.436 3.172 11.426 1 103.42 ? C2 PA6 202 A 1 HETATM 10 O O21 PA6 . . . C 2 -16.344 2.708 10.43 1 103.45 ? O21 PA6 202 A 1 HETATM 11 C C21 PA6 . . . C 2 -17.716 2.39 10.793 1 103.66 ? C21 PA6 202 A 1 HETATM 12 O O22 PA6 . . . C 2 -18.489 1.97 9.947 1 103.67 ? O22 PA6 202 A 1 HETATM 13 C C1 PA6 . . . C 2 -14.132 3.611 10.77 1 103.97 ? C1 PA6 202 A 1 HETATM 14 O O11 PA6 . . . C 2 -13.619 4.754 11.455 1 104.67 ? O11 PA6 202 A 1 HETATM 15 P P PA6 . . . C 2 -12.133 5.302 11.159 1 105.06 ? P PA6 202 A 1 HETATM 16 O O13 PA6 . . . C 2 -12.354 6.48 10.239 1 105.21 ? O13 PA6 202 A 1 HETATM 17 O O14 PA6 . . . C 2 -11.606 5.67 12.526 1 105.19 ? O14 PA6 202 A 1 HETATM 18 O O12 PA6 . . . C 2 -11.428 4.133 10.513 1 105.17 ? O12 PA6 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 18 #