data_2NRM
#
_model_server_result.job_id            YPW788NuEhtHPsL4ki6GSw 
_model_server_result.datetime_utc      '2025-08-31 22:40:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2nrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    2NRM 
#
_exptl.entry_id    2NRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.75 
_cell.angle_gamma         90 
_cell.entry_id            2NRM 
_cell.length_a            33.943 
_cell.length_b            51.932 
_cell.length_c            38.899 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C LYS 9 A LYS 9 1_555 A N SNC 10 A SNC 10 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C LYS 9 A LYS 9 1_555 A N SNC 10 A SNC 10 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C LYS 9 A LYS 9 1_555 A N SNC 10 A SNC 10 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.335 ? 
covale ? covale5 A C SNC 10 A SNC 10 1_555 A N TRP 11 A TRP 11 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale6 A C SNC 10 A SNC 10 1_555 A N TRP 11 A TRP 11 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 A C SNC 10 A SNC 10 1_555 A N TRP 11 A TRP 11 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 B FE HEM . A HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc2 B FE HEM . A HEM 148 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 122 n n 
C1 C2 GOL sing 123 n n 
C1 H11 GOL sing 124 n n 
C1 H12 GOL sing 125 n n 
O1 HO1 GOL sing 126 n n 
C2 O2 GOL sing 127 n n 
C2 C3 GOL sing 128 n n 
C2 H2 GOL sing 129 n n 
O2 HO2 GOL sing 130 n n 
C3 O3 GOL sing 131 n n 
C3 H31 GOL sing 132 n n 
C3 H32 GOL sing 133 n n 
O3 HO3 GOL sing 134 n n 
#
_atom_sites.entry_id                     2NRM 
_atom_sites.fract_transf_matrix[1][1]    0.029461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00721 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019256 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 148 148 HEM HEM . 
C 3 GOL A 1 301 1 GOL GOL . 
D 3 GOL A 1 302 2 GOL GOL . 
E 3 GOL A 1 303 3 GOL GOL . 
F 3 GOL A 1 304 4 GOL GOL . 
G 4 HOH A 1 305 1 HOH HOH . 
G 4 HOH A 2 306 2 HOH HOH . 
G 4 HOH A 3 307 3 HOH HOH . 
G 4 HOH A 4 308 4 HOH HOH . 
G 4 HOH A 5 309 5 HOH HOH . 
G 4 HOH A 6 310 6 HOH HOH . 
G 4 HOH A 7 311 7 HOH HOH . 
G 4 HOH A 8 312 8 HOH HOH . 
G 4 HOH A 9 313 9 HOH HOH . 
G 4 HOH A 10 314 10 HOH HOH . 
G 4 HOH A 11 315 11 HOH HOH . 
G 4 HOH A 12 316 12 HOH HOH . 
G 4 HOH A 13 317 13 HOH HOH . 
G 4 HOH A 14 318 14 HOH HOH . 
G 4 HOH A 15 319 15 HOH HOH . 
G 4 HOH A 16 320 16 HOH HOH . 
G 4 HOH A 17 321 17 HOH HOH . 
G 4 HOH A 18 322 18 HOH HOH . 
G 4 HOH A 19 323 19 HOH HOH . 
G 4 HOH A 20 324 20 HOH HOH . 
G 4 HOH A 21 325 21 HOH HOH . 
G 4 HOH A 22 326 22 HOH HOH . 
G 4 HOH A 23 327 23 HOH HOH . 
G 4 HOH A 24 328 24 HOH HOH . 
G 4 HOH A 25 329 25 HOH HOH . 
G 4 HOH A 26 330 26 HOH HOH . 
G 4 HOH A 27 331 27 HOH HOH . 
G 4 HOH A 28 332 28 HOH HOH . 
G 4 HOH A 29 333 29 HOH HOH . 
G 4 HOH A 30 334 30 HOH HOH . 
G 4 HOH A 31 335 31 HOH HOH . 
G 4 HOH A 32 336 32 HOH HOH . 
G 4 HOH A 33 337 33 HOH HOH . 
G 4 HOH A 34 338 34 HOH HOH . 
G 4 HOH A 35 339 35 HOH HOH . 
G 4 HOH A 36 340 36 HOH HOH . 
G 4 HOH A 37 341 37 HOH HOH . 
G 4 HOH A 38 342 38 HOH HOH . 
G 4 HOH A 39 343 40 HOH HOH . 
G 4 HOH A 40 344 41 HOH HOH . 
G 4 HOH A 41 345 42 HOH HOH . 
G 4 HOH A 42 346 43 HOH HOH . 
G 4 HOH A 43 347 44 HOH HOH . 
G 4 HOH A 44 348 46 HOH HOH . 
G 4 HOH A 45 349 47 HOH HOH . 
G 4 HOH A 46 350 50 HOH HOH . 
G 4 HOH A 47 351 51 HOH HOH . 
G 4 HOH A 48 352 52 HOH HOH . 
G 4 HOH A 49 353 53 HOH HOH . 
G 4 HOH A 50 354 54 HOH HOH . 
G 4 HOH A 51 355 55 HOH HOH . 
G 4 HOH A 52 356 56 HOH HOH . 
G 4 HOH A 53 357 57 HOH HOH . 
G 4 HOH A 54 358 58 HOH HOH . 
G 4 HOH A 55 359 59 HOH HOH . 
G 4 HOH A 56 360 61 HOH HOH . 
G 4 HOH A 57 361 62 HOH HOH . 
G 4 HOH A 58 362 63 HOH HOH . 
G 4 HOH A 59 363 64 HOH HOH . 
G 4 HOH A 60 364 65 HOH HOH . 
G 4 HOH A 61 365 66 HOH HOH . 
G 4 HOH A 62 366 67 HOH HOH . 
G 4 HOH A 63 367 68 HOH HOH . 
G 4 HOH A 64 368 69 HOH HOH . 
G 4 HOH A 65 369 70 HOH HOH . 
G 4 HOH A 66 370 71 HOH HOH . 
G 4 HOH A 67 371 72 HOH HOH . 
G 4 HOH A 68 372 73 HOH HOH . 
G 4 HOH A 69 373 74 HOH HOH . 
G 4 HOH A 70 374 75 HOH HOH . 
G 4 HOH A 71 375 76 HOH HOH . 
G 4 HOH A 72 376 77 HOH HOH . 
G 4 HOH A 73 377 78 HOH HOH . 
G 4 HOH A 74 378 79 HOH HOH . 
G 4 HOH A 75 379 80 HOH HOH . 
G 4 HOH A 76 380 81 HOH HOH . 
G 4 HOH A 77 381 82 HOH HOH . 
G 4 HOH A 78 382 83 HOH HOH . 
G 4 HOH A 79 383 84 HOH HOH . 
G 4 HOH A 80 384 85 HOH HOH . 
G 4 HOH A 81 385 86 HOH HOH . 
G 4 HOH A 82 386 87 HOH HOH . 
G 4 HOH A 83 387 88 HOH HOH . 
G 4 HOH A 84 388 89 HOH HOH . 
G 4 HOH A 85 389 90 HOH HOH . 
G 4 HOH A 86 390 91 HOH HOH . 
G 4 HOH A 87 391 92 HOH HOH . 
G 4 HOH A 88 392 93 HOH HOH . 
G 4 HOH A 89 393 94 HOH HOH . 
G 4 HOH A 90 394 95 HOH HOH . 
G 4 HOH A 91 395 96 HOH HOH . 
G 4 HOH A 92 396 97 HOH HOH . 
G 4 HOH A 93 397 98 HOH HOH . 
G 4 HOH A 94 398 99 HOH HOH . 
G 4 HOH A 95 399 100 HOH HOH . 
G 4 HOH A 96 400 101 HOH HOH . 
G 4 HOH A 97 401 102 HOH HOH . 
G 4 HOH A 98 402 103 HOH HOH . 
G 4 HOH A 99 403 105 HOH HOH . 
G 4 HOH A 100 404 106 HOH HOH . 
G 4 HOH A 101 405 107 HOH HOH . 
G 4 HOH A 102 406 108 HOH HOH . 
G 4 HOH A 103 407 109 HOH HOH . 
G 4 HOH A 104 408 110 HOH HOH . 
G 4 HOH A 105 409 111 HOH HOH . 
G 4 HOH A 106 410 112 HOH HOH . 
G 4 HOH A 107 411 113 HOH HOH . 
G 4 HOH A 108 412 114 HOH HOH . 
G 4 HOH A 109 413 115 HOH HOH . 
G 4 HOH A 110 414 116 HOH HOH . 
G 4 HOH A 111 415 117 HOH HOH . 
G 4 HOH A 112 416 118 HOH HOH . 
G 4 HOH A 113 417 119 HOH HOH . 
G 4 HOH A 114 418 120 HOH HOH . 
G 4 HOH A 115 419 121 HOH HOH . 
G 4 HOH A 116 420 122 HOH HOH . 
G 4 HOH A 117 421 123 HOH HOH . 
G 4 HOH A 118 422 124 HOH HOH . 
G 4 HOH A 119 423 125 HOH HOH . 
G 4 HOH A 120 424 126 HOH HOH . 
G 4 HOH A 121 425 127 HOH HOH . 
G 4 HOH A 122 426 128 HOH HOH . 
G 4 HOH A 123 427 129 HOH HOH . 
G 4 HOH A 124 428 130 HOH HOH . 
G 4 HOH A 125 429 131 HOH HOH . 
G 4 HOH A 126 430 132 HOH HOH . 
G 4 HOH A 127 431 133 HOH HOH . 
G 4 HOH A 128 432 134 HOH HOH . 
G 4 HOH A 129 433 135 HOH HOH . 
G 4 HOH A 130 434 136 HOH HOH . 
G 4 HOH A 131 435 137 HOH HOH . 
G 4 HOH A 132 436 138 HOH HOH . 
G 4 HOH A 133 437 140 HOH HOH . 
G 4 HOH A 134 438 141 HOH HOH . 
G 4 HOH A 135 439 142 HOH HOH . 
G 4 HOH A 136 440 143 HOH HOH . 
G 4 HOH A 137 441 144 HOH HOH . 
G 4 HOH A 138 442 145 HOH HOH . 
G 4 HOH A 139 443 146 HOH HOH . 
G 4 HOH A 140 444 147 HOH HOH . 
G 4 HOH A 141 445 149 HOH HOH . 
G 4 HOH A 142 446 150 HOH HOH . 
G 4 HOH A 143 447 151 HOH HOH . 
G 4 HOH A 144 448 152 HOH HOH . 
G 4 HOH A 145 449 154 HOH HOH . 
G 4 HOH A 146 450 155 HOH HOH . 
G 4 HOH A 147 451 156 HOH HOH . 
G 4 HOH A 148 452 157 HOH HOH . 
G 4 HOH A 149 453 158 HOH HOH . 
G 4 HOH A 150 454 159 HOH HOH . 
G 4 HOH A 151 455 160 HOH HOH . 
G 4 HOH A 152 456 161 HOH HOH . 
G 4 HOH A 153 457 162 HOH HOH . 
G 4 HOH A 154 458 163 HOH HOH . 
G 4 HOH A 155 459 164 HOH HOH . 
G 4 HOH A 156 460 165 HOH HOH . 
G 4 HOH A 157 461 166 HOH HOH . 
G 4 HOH A 158 462 167 HOH HOH . 
G 4 HOH A 159 463 168 HOH HOH . 
G 4 HOH A 160 464 169 HOH HOH . 
G 4 HOH A 161 465 170 HOH HOH . 
G 4 HOH A 162 466 172 HOH HOH . 
G 4 HOH A 163 467 173 HOH HOH . 
G 4 HOH A 164 468 174 HOH HOH . 
G 4 HOH A 165 469 175 HOH HOH . 
G 4 HOH A 166 470 176 HOH HOH . 
G 4 HOH A 167 471 177 HOH HOH . 
G 4 HOH A 168 472 178 HOH HOH . 
G 4 HOH A 169 473 179 HOH HOH . 
G 4 HOH A 170 474 180 HOH HOH . 
G 4 HOH A 171 475 181 HOH HOH . 
G 4 HOH A 172 476 182 HOH HOH . 
G 4 HOH A 173 477 183 HOH HOH . 
G 4 HOH A 174 478 184 HOH HOH . 
G 4 HOH A 175 479 185 HOH HOH . 
G 4 HOH A 176 480 186 HOH HOH . 
G 4 HOH A 177 481 187 HOH HOH . 
G 4 HOH A 178 482 188 HOH HOH . 
G 4 HOH A 179 483 189 HOH HOH . 
G 4 HOH A 180 484 190 HOH HOH . 
G 4 HOH A 181 485 191 HOH HOH . 
G 4 HOH A 182 486 192 HOH HOH . 
G 4 HOH A 183 487 193 HOH HOH . 
G 4 HOH A 184 488 194 HOH HOH . 
G 4 HOH A 185 489 195 HOH HOH . 
G 4 HOH A 186 490 196 HOH HOH . 
G 4 HOH A 187 491 197 HOH HOH . 
G 4 HOH A 188 492 198 HOH HOH . 
G 4 HOH A 189 493 199 HOH HOH . 
G 4 HOH A 190 494 200 HOH HOH . 
G 4 HOH A 191 495 201 HOH HOH . 
G 4 HOH A 192 496 202 HOH HOH . 
G 4 HOH A 193 497 204 HOH HOH . 
G 4 HOH A 194 498 205 HOH HOH . 
G 4 HOH A 195 499 206 HOH HOH . 
G 4 HOH A 196 500 207 HOH HOH . 
G 4 HOH A 197 501 208 HOH HOH . 
G 4 HOH A 198 502 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . A . C 3 -0.955 13.845 26.989 0.5 10 ? C1 GOL 301 A 1 
HETATM 2 C C1 GOL . B . C 3 0.1 13.434 29.297 0.5 20.65 ? C1 GOL 301 A 1 
HETATM 3 O O1 GOL . A . C 3 -1.338 14.997 26.257 0.5 8.26 ? O1 GOL 301 A 1 
HETATM 4 O O1 GOL . B . C 3 -0.617 12.543 30.109 0.5 18.17 ? O1 GOL 301 A 1 
HETATM 5 C C2 GOL . A . C 3 0.015 14.189 28.097 0.5 8.82 ? C2 GOL 301 A 1 
HETATM 6 C C2 GOL . B . C 3 -0.041 12.977 27.85 0.5 21.27 ? C2 GOL 301 A 1 
HETATM 7 O O2 GOL . A . C 3 1.258 14.466 27.507 0.5 9.76 ? O2 GOL 301 A 1 
HETATM 8 O O2 GOL . B . C 3 1.08 13.374 27.132 0.5 21.33 ? O2 GOL 301 A 1 
HETATM 9 C C3 GOL . A . C 3 0.177 13.024 29.066 0.5 10.32 ? C3 GOL 301 A 1 
HETATM 10 C C3 GOL . B . C 3 -1.376 13.48 27.292 0.5 21.36 ? C3 GOL 301 A 1 
HETATM 11 O O3 GOL . A . C 3 -0.999 12.754 29.777 0.5 10.55 ? O3 GOL 301 A 1 
HETATM 12 O O3 GOL . B . C 3 -1.312 14.722 26.613 0.5 21.06 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          51 
_model_server_stats.element_count           12 
#