data_2NSI
#
_model_server_result.job_id            3lYKy83xcM9iZwddNVSWdA 
_model_server_result.datetime_utc      '2024-11-14 09:45:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2nsi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":550}' 
#
_entry.id    2NSI 
#
_exptl.entry_id    2NSI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NSI 
_cell.length_a            188.37 
_cell.length_b            188.37 
_cell.length_c            230.16 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NSI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O 1 1 
C,D,P,Q,R,S,T,U,V,W,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 M N N 
? 3 R N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 42 A CYS 115 1_555 B SG CYS 42 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 C SG CYS 42 C CYS 115 1_555 D SG CYS 42 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc1 A SG CYS 127 A CYS 200 1_555 H FE HEM . A HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc2 B SG CYS 127 B CYS 200 1_555 M FE HEM . B HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc3 C SG CYS 127 C CYS 200 1_555 R FE HEM . C HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc4 D SG CYS 127 D CYS 200 1_555 W FE HEM . D HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 162 n n 
CHA C4D HEM doub 163 n n 
CHA HHA HEM sing 164 n n 
CHB C4A HEM sing 165 n n 
CHB C1B HEM doub 166 n n 
CHB HHB HEM sing 167 n n 
CHC C4B HEM sing 168 n n 
CHC C1C HEM doub 169 n n 
CHC HHC HEM sing 170 n n 
CHD C4C HEM doub 171 n n 
CHD C1D HEM sing 172 n n 
CHD HHD HEM sing 173 n n 
C1A C2A HEM doub 174 n y 
C1A NA HEM sing 175 n y 
C2A C3A HEM sing 176 n y 
C2A CAA HEM sing 177 n n 
C3A C4A HEM doub 178 n y 
C3A CMA HEM sing 179 n n 
C4A NA HEM sing 180 n y 
CMA HMA HEM sing 181 n n 
CMA HMAA HEM sing 182 n n 
CMA HMAB HEM sing 183 n n 
CAA CBA HEM sing 184 n n 
CAA HAA HEM sing 185 n n 
CAA HAAA HEM sing 186 n n 
CBA CGA HEM sing 187 n n 
CBA HBA HEM sing 188 n n 
CBA HBAA HEM sing 189 n n 
CGA O1A HEM doub 190 n n 
CGA O2A HEM sing 191 n n 
C1B C2B HEM sing 192 n n 
C1B NB HEM sing 193 n n 
C2B C3B HEM doub 194 n n 
C2B CMB HEM sing 195 n n 
C3B C4B HEM sing 196 n n 
C3B CAB HEM sing 197 n n 
C4B NB HEM doub 198 n n 
CMB HMB HEM sing 199 n n 
CMB HMBA HEM sing 200 n n 
CMB HMBB HEM sing 201 n n 
CAB CBB HEM doub 202 n n 
CAB HAB HEM sing 203 n n 
CBB HBB HEM sing 204 n n 
CBB HBBA HEM sing 205 n n 
C1C C2C HEM sing 206 n y 
C1C NC HEM sing 207 n y 
C2C C3C HEM doub 208 n y 
C2C CMC HEM sing 209 n n 
C3C C4C HEM sing 210 n y 
C3C CAC HEM sing 211 n n 
C4C NC HEM sing 212 n y 
CMC HMC HEM sing 213 n n 
CMC HMCA HEM sing 214 n n 
CMC HMCB HEM sing 215 n n 
CAC CBC HEM doub 216 n n 
CAC HAC HEM sing 217 n n 
CBC HBC HEM sing 218 n n 
CBC HBCA HEM sing 219 n n 
C1D C2D HEM sing 220 n n 
C1D ND HEM doub 221 n n 
C2D C3D HEM doub 222 n n 
C2D CMD HEM sing 223 n n 
C3D C4D HEM sing 224 n n 
C3D CAD HEM sing 225 n n 
C4D ND HEM sing 226 n n 
CMD HMD HEM sing 227 n n 
CMD HMDA HEM sing 228 n n 
CMD HMDB HEM sing 229 n n 
CAD CBD HEM sing 230 n n 
CAD HAD HEM sing 231 n n 
CAD HADA HEM sing 232 n n 
CBD CGD HEM sing 233 n n 
CBD HBD HEM sing 234 n n 
CBD HBDA HEM sing 235 n n 
CGD O1D HEM doub 236 n n 
CGD O2D HEM sing 237 n n 
O2A H2A HEM sing 238 n n 
O2D H2D HEM sing 239 n n 
FE NA HEM sing 240 n n 
FE NB HEM sing 241 n n 
FE NC HEM sing 242 n n 
FE ND HEM sing 243 n n 
#
_atom_sites.entry_id                     2NSI 
_atom_sites.fract_transf_matrix[1][1]    0.005309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 910 910 SO4 SO4 . 
F 2 SO4 A 1 920 920 SO4 SO4 . 
G 2 SO4 A 1 930 930 SO4 SO4 . 
H 3 HEM A 1 550 550 HEM HEM . 
I 4 H4B A 1 600 600 H4B BH4 . 
J 5 ITU A 1 800 800 ITU ITU . 
K 2 SO4 B 1 911 910 SO4 SO4 . 
L 2 SO4 B 1 921 920 SO4 SO4 . 
M 3 HEM B 1 550 550 HEM HEM . 
N 4 H4B B 1 601 600 H4B BH4 . 
O 5 ITU B 1 801 800 ITU ITU . 
P 2 SO4 C 1 912 910 SO4 SO4 . 
Q 2 SO4 C 1 922 920 SO4 SO4 . 
R 3 HEM C 1 550 550 HEM HEM . 
S 4 H4B C 1 602 600 H4B BH4 . 
T 5 ITU C 1 802 800 ITU ITU . 
U 2 SO4 D 1 913 910 SO4 SO4 . 
V 2 SO4 D 1 923 920 SO4 SO4 . 
W 3 HEM D 1 550 550 HEM HEM . 
X 4 H4B D 1 603 600 H4B BH4 . 
Y 5 ITU D 1 803 800 ITU ITU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 10.63 60.382 19.545 1 27.83 ? CHA HEM 550 A 1 
HETATM 2 C CHB HEM . . . H 3 6.265 62.281 19.679 1 21.46 ? CHB HEM 550 A 1 
HETATM 3 C CHC HEM . . . H 3 4.971 59.2 16.35 1 23.32 ? CHC HEM 550 A 1 
HETATM 4 C CHD HEM . . . H 3 9.036 56.8 16.91 1 28.3 ? CHD HEM 550 A 1 
HETATM 5 C C1A HEM . . . H 3 9.592 61.227 19.742 1 27.82 ? C1A HEM 550 A 1 
HETATM 6 C C2A HEM . . . H 3 9.704 62.499 20.409 1 30.91 ? C2A HEM 550 A 1 
HETATM 7 C C3A HEM . . . H 3 8.475 62.997 20.513 1 30 ? C3A HEM 550 A 1 
HETATM 8 C C4A HEM . . . H 3 7.599 62.034 19.899 1 30.3 ? C4A HEM 550 A 1 
HETATM 9 C CMA HEM . . . H 3 8.099 64.356 21.063 1 27.05 ? CMA HEM 550 A 1 
HETATM 10 C CAA HEM . . . H 3 10.967 63.224 20.819 1 34.21 ? CAA HEM 550 A 1 
HETATM 11 C CBA HEM . . . H 3 11.709 63.754 19.599 1 39.22 ? CBA HEM 550 A 1 
HETATM 12 C CGA HEM . . . H 3 13.029 64.421 19.947 1 37.14 ? CGA HEM 550 A 1 
HETATM 13 O O1A HEM . . . H 3 13.134 64.995 21.059 1 23.8 ? O1A HEM 550 A 1 
HETATM 14 O O2A HEM . . . H 3 13.956 64.366 19.104 1 35.26 ? O2A HEM 550 A 1 
HETATM 15 C C1B HEM . . . H 3 5.473 61.513 18.883 1 20.9 ? C1B HEM 550 A 1 
HETATM 16 C C2B HEM . . . H 3 4.158 61.914 18.468 1 20.18 ? C2B HEM 550 A 1 
HETATM 17 C C3B HEM . . . H 3 3.791 61.063 17.502 1 25.51 ? C3B HEM 550 A 1 
HETATM 18 C C4B HEM . . . H 3 4.884 60.118 17.35 1 19.72 ? C4B HEM 550 A 1 
HETATM 19 C CMB HEM . . . H 3 3.295 63.014 19.054 1 25.1 ? CMB HEM 550 A 1 
HETATM 20 C CAB HEM . . . H 3 2.619 61.164 16.759 1 20.67 ? CAB HEM 550 A 1 
HETATM 21 C CBB HEM . . . H 3 1.654 60.219 16.825 1 33.88 ? CBB HEM 550 A 1 
HETATM 22 C C1C HEM . . . H 3 6.018 58.353 16.152 1 29.51 ? C1C HEM 550 A 1 
HETATM 23 C C2C HEM . . . H 3 6.033 57.327 15.118 1 32.39 ? C2C HEM 550 A 1 
HETATM 24 C C3C HEM . . . H 3 7.145 56.575 15.345 1 33.25 ? C3C HEM 550 A 1 
HETATM 25 C C4C HEM . . . H 3 7.801 57.194 16.472 1 30.93 ? C4C HEM 550 A 1 
HETATM 26 C CMC HEM . . . H 3 4.972 57.138 14.036 1 25.04 ? CMC HEM 550 A 1 
HETATM 27 C CAC HEM . . . H 3 7.601 55.404 14.746 1 34.71 ? CAC HEM 550 A 1 
HETATM 28 C CBC HEM . . . H 3 6.922 54.489 14.003 1 41.92 ? CBC HEM 550 A 1 
HETATM 29 C C1D HEM . . . H 3 9.798 57.502 17.79 1 30.98 ? C1D HEM 550 A 1 
HETATM 30 C C2D HEM . . . H 3 11.197 57.239 17.996 1 31.97 ? C2D HEM 550 A 1 
HETATM 31 C C3D HEM . . . H 3 11.68 58.284 18.681 1 34.09 ? C3D HEM 550 A 1 
HETATM 32 C C4D HEM . . . H 3 10.552 59.173 18.925 1 32.89 ? C4D HEM 550 A 1 
HETATM 33 C CMD HEM . . . H 3 12.002 56.052 17.489 1 25.99 ? CMD HEM 550 A 1 
HETATM 34 C CAD HEM . . . H 3 13.146 58.56 18.943 1 33.97 ? CAD HEM 550 A 1 
HETATM 35 C CBD HEM . . . H 3 13.579 59.563 17.877 1 37.87 ? CBD HEM 550 A 1 
HETATM 36 C CGD HEM . . . H 3 14.954 60.134 18.134 1 38.86 ? CGD HEM 550 A 1 
HETATM 37 O O1D HEM . . . H 3 15.811 59.391 18.65 1 39.08 ? O1D HEM 550 A 1 
HETATM 38 O O2D HEM . . . H 3 15.173 61.326 17.825 1 35.69 ? O2D HEM 550 A 1 
HETATM 39 N NA HEM . . . H 3 8.3 60.945 19.409 1 29.43 ? NA HEM 550 A 1 
HETATM 40 N NB HEM . . . H 3 5.903 60.377 18.223 1 23.56 ? NB HEM 550 A 1 
HETATM 41 N NC HEM . . . H 3 7.108 58.27 16.97 1 24.21 ? NC HEM 550 A 1 
HETATM 42 N ND HEM . . . H 3 9.394 58.667 18.394 1 34.53 ? ND HEM 550 A 1 
HETATM 43 FE FE HEM . . . H 3 7.585 59.374 18.473 1 24.47 ? FE HEM 550 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#