data_2NSI # _model_server_result.job_id fVoYANQwB2ySDaJYqaA4Xw _model_server_result.datetime_utc '2024-11-14 10:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":602}' # _entry.id 2NSI # _exptl.entry_id 2NSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NSI _cell.length_a 188.37 _cell.length_b 188.37 _cell.length_c 230.16 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O 1 1 C,D,P,Q,R,S,T,U,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N ? 4 S N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 115 1_555 B SG CYS 42 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 C SG CYS 42 C CYS 115 1_555 D SG CYS 42 D CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc1 A SG CYS 127 A CYS 200 1_555 H FE HEM . A HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 B SG CYS 127 B CYS 200 1_555 M FE HEM . B HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 C SG CYS 127 C CYS 200 1_555 R FE HEM . C HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 D SG CYS 127 D CYS 200 1_555 W FE HEM . D HEM 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 129 n y N1 C8A H4B sing 130 n y C2 N2 H4B sing 131 n n C2 N3 H4B sing 132 n y N2 HN21 H4B sing 133 n n N2 HN22 H4B sing 134 n n N3 C4 H4B sing 135 n y N3 HN3 H4B sing 136 n n C4 O4 H4B doub 137 n n C4 C4A H4B sing 138 n y C4A C8A H4B doub 139 n y C4A N5 H4B sing 140 n n C8A N8 H4B sing 141 n n N5 C6 H4B sing 142 n n N5 HN5 H4B sing 143 n n N8 C7 H4B sing 144 n n N8 HN8 H4B sing 145 n n C6 C7 H4B sing 146 n n C6 C9 H4B sing 147 n n C6 H6 H4B sing 148 n n C7 H71 H4B sing 149 n n C7 H72 H4B sing 150 n n C9 O9 H4B sing 151 n n C9 C10 H4B sing 152 n n C9 H9 H4B sing 153 n n O9 HO9 H4B sing 154 n n C10 C11 H4B sing 155 n n C10 O10 H4B sing 156 n n C10 H10 H4B sing 157 n n C11 H111 H4B sing 158 n n C11 H112 H4B sing 159 n n C11 H113 H4B sing 160 n n O10 HO0 H4B sing 161 n n # _atom_sites.entry_id 2NSI _atom_sites.fract_transf_matrix[1][1] 0.005309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 910 910 SO4 SO4 . F 2 SO4 A 1 920 920 SO4 SO4 . G 2 SO4 A 1 930 930 SO4 SO4 . H 3 HEM A 1 550 550 HEM HEM . I 4 H4B A 1 600 600 H4B BH4 . J 5 ITU A 1 800 800 ITU ITU . K 2 SO4 B 1 911 910 SO4 SO4 . L 2 SO4 B 1 921 920 SO4 SO4 . M 3 HEM B 1 550 550 HEM HEM . N 4 H4B B 1 601 600 H4B BH4 . O 5 ITU B 1 801 800 ITU ITU . P 2 SO4 C 1 912 910 SO4 SO4 . Q 2 SO4 C 1 922 920 SO4 SO4 . R 3 HEM C 1 550 550 HEM HEM . S 4 H4B C 1 602 600 H4B BH4 . T 5 ITU C 1 802 800 ITU ITU . U 2 SO4 D 1 913 910 SO4 SO4 . V 2 SO4 D 1 923 920 SO4 SO4 . W 3 HEM D 1 550 550 HEM HEM . X 4 H4B D 1 603 600 H4B BH4 . Y 5 ITU D 1 803 800 ITU ITU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . S 4 65.94 17.716 67.459 1 36.94 ? N1 H4B 602 C 1 HETATM 2 C C2 H4B . . . S 4 66.426 17.945 66.222 1 38.28 ? C2 H4B 602 C 1 HETATM 3 N N2 H4B . . . S 4 67.321 18.873 65.968 1 38.67 ? N2 H4B 602 C 1 HETATM 4 N N3 H4B . . . S 4 65.973 17.189 65.211 1 33.19 ? N3 H4B 602 C 1 HETATM 5 C C4 H4B . . . S 4 65.04 16.162 65.323 1 33.3 ? C4 H4B 602 C 1 HETATM 6 O O4 H4B . . . S 4 64.725 15.542 64.288 1 21.2 ? O4 H4B 602 C 1 HETATM 7 C C4A H4B . . . S 4 64.566 15.973 66.654 1 30.68 ? C4A H4B 602 C 1 HETATM 8 C C8A H4B . . . S 4 65.008 16.741 67.712 1 31.97 ? C8A H4B 602 C 1 HETATM 9 N N5 H4B . . . S 4 63.572 14.932 66.867 1 31.99 ? N5 H4B 602 C 1 HETATM 10 N N8 H4B . . . S 4 64.582 16.581 68.963 1 28.56 ? N8 H4B 602 C 1 HETATM 11 C C6 H4B . . . S 4 62.709 15.222 68.089 1 37.86 ? C6 H4B 602 C 1 HETATM 12 C C7 H4B . . . S 4 63.597 15.557 69.272 1 27.98 ? C7 H4B 602 C 1 HETATM 13 C C9 H4B . . . S 4 61.798 14.001 68.304 1 43.51 ? C9 H4B 602 C 1 HETATM 14 O O9 H4B . . . S 4 62.465 12.748 68.403 1 41.33 ? O9 H4B 602 C 1 HETATM 15 C C10 H4B . . . S 4 60.897 14.188 69.546 1 43.87 ? C10 H4B 602 C 1 HETATM 16 C C11 H4B . . . S 4 59.863 13.121 69.628 1 47.1 ? C11 H4B 602 C 1 HETATM 17 O O10 H4B . . . S 4 60.282 15.477 69.375 1 46.97 ? O10 H4B 602 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #