data_2NSJ # _model_server_result.job_id j3AFEK5ilKG1jxywMKhgqA _model_server_result.datetime_utc '2024-10-20 13:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":242}' # _entry.id 2NSJ # _exptl.entry_id 2NSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NSJ _cell.length_a 111.255 _cell.length_b 111.255 _cell.length_c 49.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -49.4 6 'crystal symmetry operation' 6_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -49.4 7 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -49.4 8 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -49.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O9 P' _chem_comp.formula_weight 339.196 _chem_comp.id C2R _chem_comp.mon_nstd_flag . _chem_comp.name '5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CAIR;4-CARBOXY-5-AMINOIMIDAZOLE RIBONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A C2R doub 70 n n PA O2A C2R sing 71 n n PA O3A C2R sing 72 n n PA O5' C2R sing 73 n n O2A H2A C2R sing 74 n n O3A H3A C2R sing 75 n n O5' C5' C2R sing 76 n n C2' O2' C2R sing 77 n n C2' C3' C2R sing 78 n n C2' C1' C2R sing 79 n n C2' H2' C2R sing 80 n n O2' H3 C2R sing 81 n n C3' O3' C2R sing 82 n n C3' C4' C2R sing 83 n n C3' H3' C2R sing 84 n n O3' H1 C2R sing 85 n n C5' C4' C2R sing 86 n n C5' "H5'1" C2R sing 87 n n C5' "H5'2" C2R sing 88 n n C4' O4' C2R sing 89 n n C4' H4' C2R sing 90 n n O4' C1' C2R sing 91 n n C1' N1 C2R sing 92 n n C1' H1' C2R sing 93 n n N1 C5 C2R sing 94 n y N1 C2 C2R sing 95 n y C5 C4 C2R doub 96 n y C5 N5 C2R sing 97 n n C4 N3 C2R sing 98 n y C4 C6 C2R sing 99 n n N3 C2 C2R doub 100 n y C2 H2 C2R sing 101 n n N5 HN51 C2R sing 102 n n N5 HN52 C2R sing 103 n n C6 O7 C2R sing 104 n n C6 O8 C2R doub 105 n n O7 HO7 C2R sing 106 n n # _atom_sites.entry_id 2NSJ _atom_sites.fract_transf_matrix[1][1] 0.008988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2R A 1 242 242 C2R C2R . C 3 HOH A 1 243 1 HOH HOH . C 3 HOH A 2 244 2 HOH HOH . C 3 HOH A 3 245 3 HOH HOH . C 3 HOH A 4 246 4 HOH HOH . C 3 HOH A 5 247 5 HOH HOH . C 3 HOH A 6 248 6 HOH HOH . C 3 HOH A 7 249 7 HOH HOH . C 3 HOH A 8 250 8 HOH HOH . C 3 HOH A 9 251 11 HOH HOH . C 3 HOH A 10 252 12 HOH HOH . C 3 HOH A 11 253 13 HOH HOH . C 3 HOH A 12 254 14 HOH HOH . C 3 HOH A 13 255 15 HOH HOH . C 3 HOH A 14 256 16 HOH HOH . C 3 HOH A 15 257 18 HOH HOH . C 3 HOH A 16 258 19 HOH HOH . C 3 HOH A 17 259 21 HOH HOH . C 3 HOH A 18 260 22 HOH HOH . C 3 HOH A 19 261 23 HOH HOH . C 3 HOH A 20 262 24 HOH HOH . C 3 HOH A 21 263 25 HOH HOH . C 3 HOH A 22 264 27 HOH HOH . C 3 HOH A 23 265 28 HOH HOH . C 3 HOH A 24 266 29 HOH HOH . C 3 HOH A 25 267 30 HOH HOH . C 3 HOH A 26 268 31 HOH HOH . C 3 HOH A 27 269 36 HOH HOH . C 3 HOH A 28 270 38 HOH HOH . C 3 HOH A 29 271 40 HOH HOH . C 3 HOH A 30 272 43 HOH HOH . C 3 HOH A 31 273 45 HOH HOH . C 3 HOH A 32 274 46 HOH HOH . C 3 HOH A 33 275 50 HOH HOH . C 3 HOH A 34 276 52 HOH HOH . C 3 HOH A 35 277 54 HOH HOH . C 3 HOH A 36 278 55 HOH HOH . C 3 HOH A 37 279 56 HOH HOH . C 3 HOH A 38 280 57 HOH HOH . C 3 HOH A 39 281 58 HOH HOH . C 3 HOH A 40 282 59 HOH HOH . C 3 HOH A 41 283 60 HOH HOH . C 3 HOH A 42 284 61 HOH HOH . C 3 HOH A 43 285 62 HOH HOH . C 3 HOH A 44 286 63 HOH HOH . C 3 HOH A 45 287 64 HOH HOH . C 3 HOH A 46 288 65 HOH HOH . C 3 HOH A 47 289 66 HOH HOH . C 3 HOH A 48 290 67 HOH HOH . C 3 HOH A 49 291 68 HOH HOH . C 3 HOH A 50 292 69 HOH HOH . C 3 HOH A 51 293 70 HOH HOH . C 3 HOH A 52 294 71 HOH HOH . C 3 HOH A 53 295 72 HOH HOH . C 3 HOH A 54 296 73 HOH HOH . C 3 HOH A 55 297 74 HOH HOH . C 3 HOH A 56 298 75 HOH HOH . C 3 HOH A 57 299 76 HOH HOH . C 3 HOH A 58 300 77 HOH HOH . C 3 HOH A 59 301 78 HOH HOH . C 3 HOH A 60 302 79 HOH HOH . C 3 HOH A 61 303 80 HOH HOH . C 3 HOH A 62 304 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA C2R . . . B 2 15.564 -11.881 -9.319 1 39.48 ? PA C2R 242 A 1 HETATM 2 O O1A C2R . . . B 2 14.397 -11.672 -8.232 1 47.28 ? O1A C2R 242 A 1 HETATM 3 O O2A C2R . . . B 2 16.54 -12.908 -8.891 1 43.25 ? O2A C2R 242 A 1 HETATM 4 O O3A C2R . . . B 2 16.246 -10.442 -9.546 1 42.7 ? O3A C2R 242 A 1 HETATM 5 O O5' C2R . . . B 2 14.844 -12.266 -10.706 1 42.14 ? O5' C2R 242 A 1 HETATM 6 C C2' C2R . . . B 2 13.175 -14.294 -13.102 1 39.91 ? C2' C2R 242 A 1 HETATM 7 O O2' C2R . . . B 2 12.166 -15.168 -13.614 1 42.08 ? O2' C2R 242 A 1 HETATM 8 C C3' C2R . . . B 2 12.556 -13.189 -12.244 1 39.02 ? C3' C2R 242 A 1 HETATM 9 O O3' C2R . . . B 2 11.195 -12.975 -12.626 1 35.97 ? O3' C2R 242 A 1 HETATM 10 C C5' C2R . . . B 2 14.004 -11.323 -11.374 1 40.33 ? C5' C2R 242 A 1 HETATM 11 C C4' C2R . . . B 2 13.395 -11.963 -12.622 1 39.73 ? C4' C2R 242 A 1 HETATM 12 O O4' C2R . . . B 2 14.428 -12.454 -13.493 1 41.31 ? O4' C2R 242 A 1 HETATM 13 C C1' C2R . . . B 2 13.739 -13.457 -14.248 1 38.82 ? C1' C2R 242 A 1 HETATM 14 N N1 C2R . . . B 2 14.64 -14.311 -15.052 1 39.57 ? N1 C2R 242 A 1 HETATM 15 C C5 C2R . . . B 2 14.568 -14.51 -16.364 1 40 ? C5 C2R 242 A 1 HETATM 16 C C4 C2R . . . B 2 15.491 -15.497 -16.68 1 40.72 ? C4 C2R 242 A 1 HETATM 17 N N3 C2R . . . B 2 16.115 -15.845 -15.559 1 40.58 ? N3 C2R 242 A 1 HETATM 18 C C2 C2R . . . B 2 15.59 -15.115 -14.576 1 40.3 ? C2 C2R 242 A 1 HETATM 19 N N5 C2R . . . B 2 13.835 -13.808 -17.222 1 37.34 ? N5 C2R 242 A 1 HETATM 20 C C6 C2R . . . B 2 15.685 -16.139 -18.054 1 40.17 ? C6 C2R 242 A 1 HETATM 21 O O7 C2R . . . B 2 14.958 -15.74 -18.989 1 41.28 ? O7 C2R 242 A 1 HETATM 22 O O8 C2R . . . B 2 16.545 -17.04 -18.163 1 40.18 ? O8 C2R 242 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 22 #