data_2NSL # _model_server_result.job_id 7WlLagQ_J1kGR48T79aPrg _model_server_result.datetime_utc '2025-02-17 18:30:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2NSL # _exptl.entry_id 2NSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NSL _cell.length_a 111.317 _cell.length_b 111.317 _cell.length_c 49.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -49.2 6 'crystal symmetry operation' 6_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -49.2 7 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -49.2 8 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -49.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O9 P' _chem_comp.formula_weight 339.196 _chem_comp.id C2R _chem_comp.mon_nstd_flag . _chem_comp.name '5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CAIR;4-CARBOXY-5-AMINOIMIDAZOLE RIBONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A C2R doub 70 n n PA O2A C2R sing 71 n n PA O3A C2R sing 72 n n PA O5' C2R sing 73 n n O2A H2A C2R sing 74 n n O3A H3A C2R sing 75 n n O5' C5' C2R sing 76 n n C2' O2' C2R sing 77 n n C2' C3' C2R sing 78 n n C2' C1' C2R sing 79 n n C2' H2' C2R sing 80 n n O2' H3 C2R sing 81 n n C3' O3' C2R sing 82 n n C3' C4' C2R sing 83 n n C3' H3' C2R sing 84 n n O3' H1 C2R sing 85 n n C5' C4' C2R sing 86 n n C5' "H5'1" C2R sing 87 n n C5' "H5'2" C2R sing 88 n n C4' O4' C2R sing 89 n n C4' H4' C2R sing 90 n n O4' C1' C2R sing 91 n n C1' N1 C2R sing 92 n n C1' H1' C2R sing 93 n n N1 C5 C2R sing 94 n y N1 C2 C2R sing 95 n y C5 C4 C2R doub 96 n y C5 N5 C2R sing 97 n n C4 N3 C2R sing 98 n y C4 C6 C2R sing 99 n n N3 C2 C2R doub 100 n y C2 H2 C2R sing 101 n n N5 HN51 C2R sing 102 n n N5 HN52 C2R sing 103 n n C6 O7 C2R sing 104 n n C6 O8 C2R doub 105 n n O7 HO7 C2R sing 106 n n # _atom_sites.entry_id 2NSL _atom_sites.fract_transf_matrix[1][1] 0.008983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2R A 1 300 300 C2R C2R . C 3 HOH A 1 301 2 HOH HOH . C 3 HOH A 2 302 3 HOH HOH . C 3 HOH A 3 303 4 HOH HOH . C 3 HOH A 4 304 5 HOH HOH . C 3 HOH A 5 305 6 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 12 HOH HOH . C 3 HOH A 10 310 14 HOH HOH . C 3 HOH A 11 311 16 HOH HOH . C 3 HOH A 12 312 18 HOH HOH . C 3 HOH A 13 313 19 HOH HOH . C 3 HOH A 14 314 20 HOH HOH . C 3 HOH A 15 315 21 HOH HOH . C 3 HOH A 16 316 23 HOH HOH . C 3 HOH A 17 317 24 HOH HOH . C 3 HOH A 18 318 26 HOH HOH . C 3 HOH A 19 319 28 HOH HOH . C 3 HOH A 20 320 29 HOH HOH . C 3 HOH A 21 321 30 HOH HOH . C 3 HOH A 22 322 31 HOH HOH . C 3 HOH A 23 323 32 HOH HOH . C 3 HOH A 24 324 34 HOH HOH . C 3 HOH A 25 325 36 HOH HOH . C 3 HOH A 26 326 37 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 41 HOH HOH . C 3 HOH A 29 329 43 HOH HOH . C 3 HOH A 30 330 44 HOH HOH . C 3 HOH A 31 331 45 HOH HOH . C 3 HOH A 32 332 47 HOH HOH . C 3 HOH A 33 333 48 HOH HOH . C 3 HOH A 34 334 49 HOH HOH . C 3 HOH A 35 335 52 HOH HOH . C 3 HOH A 36 336 53 HOH HOH . C 3 HOH A 37 337 54 HOH HOH . C 3 HOH A 38 338 55 HOH HOH . C 3 HOH A 39 339 57 HOH HOH . C 3 HOH A 40 340 60 HOH HOH . C 3 HOH A 41 341 61 HOH HOH . C 3 HOH A 42 342 62 HOH HOH . C 3 HOH A 43 343 63 HOH HOH . C 3 HOH A 44 344 64 HOH HOH . C 3 HOH A 45 345 65 HOH HOH . C 3 HOH A 46 346 68 HOH HOH . C 3 HOH A 47 347 69 HOH HOH . C 3 HOH A 48 348 70 HOH HOH . C 3 HOH A 49 349 71 HOH HOH . C 3 HOH A 50 350 72 HOH HOH . C 3 HOH A 51 351 74 HOH HOH . C 3 HOH A 52 352 76 HOH HOH . C 3 HOH A 53 353 77 HOH HOH . C 3 HOH A 54 354 79 HOH HOH . C 3 HOH A 55 355 80 HOH HOH . C 3 HOH A 56 356 82 HOH HOH . C 3 HOH A 57 357 83 HOH HOH . C 3 HOH A 58 358 84 HOH HOH . C 3 HOH A 59 359 85 HOH HOH . C 3 HOH A 60 360 88 HOH HOH . C 3 HOH A 61 361 89 HOH HOH . C 3 HOH A 62 362 90 HOH HOH . C 3 HOH A 63 363 91 HOH HOH . C 3 HOH A 64 364 93 HOH HOH . C 3 HOH A 65 365 95 HOH HOH . C 3 HOH A 66 366 96 HOH HOH . C 3 HOH A 67 367 97 HOH HOH . C 3 HOH A 68 368 98 HOH HOH . C 3 HOH A 69 369 99 HOH HOH . C 3 HOH A 70 370 103 HOH HOH . C 3 HOH A 71 371 106 HOH HOH . C 3 HOH A 72 372 110 HOH HOH . C 3 HOH A 73 373 111 HOH HOH . C 3 HOH A 74 374 112 HOH HOH . C 3 HOH A 75 375 113 HOH HOH . C 3 HOH A 76 376 115 HOH HOH . C 3 HOH A 77 377 116 HOH HOH . C 3 HOH A 78 378 117 HOH HOH . C 3 HOH A 79 379 118 HOH HOH . C 3 HOH A 80 380 119 HOH HOH . C 3 HOH A 81 381 120 HOH HOH . C 3 HOH A 82 382 121 HOH HOH . C 3 HOH A 83 383 122 HOH HOH . C 3 HOH A 84 384 123 HOH HOH . C 3 HOH A 85 385 124 HOH HOH . C 3 HOH A 86 386 125 HOH HOH . C 3 HOH A 87 387 126 HOH HOH . C 3 HOH A 88 388 127 HOH HOH . C 3 HOH A 89 389 128 HOH HOH . C 3 HOH A 90 390 129 HOH HOH . C 3 HOH A 91 391 130 HOH HOH . C 3 HOH A 92 392 131 HOH HOH . C 3 HOH A 93 393 132 HOH HOH . C 3 HOH A 94 394 133 HOH HOH . C 3 HOH A 95 395 134 HOH HOH . C 3 HOH A 96 396 136 HOH HOH . C 3 HOH A 97 397 137 HOH HOH . C 3 HOH A 98 398 139 HOH HOH . C 3 HOH A 99 399 141 HOH HOH . C 3 HOH A 100 400 143 HOH HOH . C 3 HOH A 101 401 144 HOH HOH . C 3 HOH A 102 402 145 HOH HOH . C 3 HOH A 103 403 147 HOH HOH . C 3 HOH A 104 404 150 HOH HOH . C 3 HOH A 105 405 152 HOH HOH . C 3 HOH A 106 406 153 HOH HOH . C 3 HOH A 107 407 157 HOH HOH . C 3 HOH A 108 408 158 HOH HOH . C 3 HOH A 109 409 160 HOH HOH . C 3 HOH A 110 410 164 HOH HOH . C 3 HOH A 111 411 169 HOH HOH . C 3 HOH A 112 412 174 HOH HOH . C 3 HOH A 113 413 176 HOH HOH . C 3 HOH A 114 414 181 HOH HOH . C 3 HOH A 115 415 182 HOH HOH . C 3 HOH A 116 416 185 HOH HOH . C 3 HOH A 117 417 186 HOH HOH . C 3 HOH A 118 418 188 HOH HOH . C 3 HOH A 119 419 189 HOH HOH . C 3 HOH A 120 420 192 HOH HOH . C 3 HOH A 121 421 198 HOH HOH . C 3 HOH A 122 422 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA C2R . . . B 2 15.59 -11.638 -9.429 1 32.57 ? PA C2R 300 A 1 HETATM 2 O O1A C2R . . . B 2 16.412 -12.965 -9.036 1 33.64 ? O1A C2R 300 A 1 HETATM 3 O O2A C2R . . . B 2 14.551 -11.39 -8.225 1 37.6 ? O2A C2R 300 A 1 HETATM 4 O O3A C2R . . . B 2 16.464 -10.473 -9.688 1 34.03 ? O3A C2R 300 A 1 HETATM 5 O O5' C2R . . . B 2 14.699 -12.044 -10.707 1 34.19 ? O5' C2R 300 A 1 HETATM 6 C C2' C2R . . . B 2 13.142 -14.012 -13.064 1 34.51 ? C2' C2R 300 A 1 HETATM 7 O O2' C2R . . . B 2 12.196 -14.955 -13.574 1 33.01 ? O2' C2R 300 A 1 HETATM 8 C C3' C2R . . . B 2 12.423 -12.918 -12.275 1 33.16 ? C3' C2R 300 A 1 HETATM 9 O O3' C2R . . . B 2 11.087 -12.774 -12.764 1 33.39 ? O3' C2R 300 A 1 HETATM 10 C C5' C2R . . . B 2 13.862 -11.075 -11.342 1 32.55 ? C5' C2R 300 A 1 HETATM 11 C C4' C2R . . . B 2 13.241 -11.666 -12.609 1 33.22 ? C4' C2R 300 A 1 HETATM 12 O O4' C2R . . . B 2 14.283 -12.096 -13.502 1 35.67 ? O4' C2R 300 A 1 HETATM 13 C C1' C2R . . . B 2 13.672 -13.173 -14.224 1 35.39 ? C1' C2R 300 A 1 HETATM 14 N N1 C2R . . . B 2 14.629 -13.99 -15.002 1 37.96 ? N1 C2R 300 A 1 HETATM 15 C C5 C2R . . . B 2 14.519 -14.309 -16.287 1 40.2 ? C5 C2R 300 A 1 HETATM 16 C C4 C2R . . . B 2 15.533 -15.208 -16.579 1 40.56 ? C4 C2R 300 A 1 HETATM 17 N N3 C2R . . . B 2 16.244 -15.39 -15.471 1 39.17 ? N3 C2R 300 A 1 HETATM 18 C C2 C2R . . . B 2 15.686 -14.642 -14.519 1 39.37 ? C2 C2R 300 A 1 HETATM 19 N N5 C2R . . . B 2 13.638 -13.805 -17.148 1 38.92 ? N5 C2R 300 A 1 HETATM 20 C C6 C2R . . . B 2 15.723 -15.945 -17.906 1 41.37 ? C6 C2R 300 A 1 HETATM 21 O O7 C2R . . . B 2 14.997 -15.609 -18.867 1 41.74 ? O7 C2R 300 A 1 HETATM 22 O O8 C2R . . . B 2 16.585 -16.85 -17.953 1 41.28 ? O8 C2R 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #