data_2NSR # _model_server_result.job_id ZVA6k8HcrQKcJplerTw4mg _model_server_result.datetime_utc '2024-11-05 01:20:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2NSR # _exptl.entry_id 2NSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106 _cell.angle_gamma 90 _cell.entry_id 2NSR _cell.length_a 35.344 _cell.length_b 28.74 _cell.length_c 63.471 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 E N NSM . A NSM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 2NSR _atom_sites.fract_transf_matrix[1][1] 0.028293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 2 SO4 A 1 157 157 SO4 SO4 . D 3 HEM A 1 154 154 HEM HEM . E 4 NSM A 1 155 155 NSM NOM . F 5 HOH A 1 158 2 HOH HOH . F 5 HOH A 2 159 3 HOH HOH . F 5 HOH A 3 160 4 HOH HOH . F 5 HOH A 4 161 5 HOH HOH . F 5 HOH A 5 162 6 HOH HOH . F 5 HOH A 6 163 7 HOH HOH . F 5 HOH A 7 164 8 HOH HOH . F 5 HOH A 8 165 9 HOH HOH . F 5 HOH A 9 166 10 HOH HOH . F 5 HOH A 10 167 11 HOH HOH . F 5 HOH A 11 168 12 HOH HOH . F 5 HOH A 12 169 13 HOH HOH . F 5 HOH A 13 170 14 HOH HOH . F 5 HOH A 14 171 15 HOH HOH . F 5 HOH A 15 172 16 HOH HOH . F 5 HOH A 16 173 17 HOH HOH . F 5 HOH A 17 174 18 HOH HOH . F 5 HOH A 18 175 19 HOH HOH . F 5 HOH A 19 176 20 HOH HOH . F 5 HOH A 20 177 21 HOH HOH . F 5 HOH A 21 178 22 HOH HOH . F 5 HOH A 22 179 23 HOH HOH . F 5 HOH A 23 180 24 HOH HOH . F 5 HOH A 24 181 25 HOH HOH . F 5 HOH A 25 182 26 HOH HOH . F 5 HOH A 26 183 27 HOH HOH . F 5 HOH A 27 184 28 HOH HOH . F 5 HOH A 28 185 29 HOH HOH . F 5 HOH A 29 186 30 HOH HOH . F 5 HOH A 30 187 31 HOH HOH . F 5 HOH A 31 188 32 HOH HOH . F 5 HOH A 32 189 33 HOH HOH . F 5 HOH A 33 190 34 HOH HOH . F 5 HOH A 34 191 35 HOH HOH . F 5 HOH A 35 192 36 HOH HOH . F 5 HOH A 36 193 37 HOH HOH . F 5 HOH A 37 194 38 HOH HOH . F 5 HOH A 38 195 39 HOH HOH . F 5 HOH A 39 196 40 HOH HOH . F 5 HOH A 40 197 41 HOH HOH . F 5 HOH A 41 198 42 HOH HOH . F 5 HOH A 42 199 43 HOH HOH . F 5 HOH A 43 200 44 HOH HOH . F 5 HOH A 44 201 45 HOH HOH . F 5 HOH A 45 202 46 HOH HOH . F 5 HOH A 46 203 47 HOH HOH . F 5 HOH A 47 204 48 HOH HOH . F 5 HOH A 48 205 49 HOH HOH . F 5 HOH A 49 206 50 HOH HOH . F 5 HOH A 50 207 51 HOH HOH . F 5 HOH A 51 208 52 HOH HOH . F 5 HOH A 52 209 53 HOH HOH . F 5 HOH A 53 210 54 HOH HOH . F 5 HOH A 54 211 55 HOH HOH . F 5 HOH A 55 212 56 HOH HOH . F 5 HOH A 56 213 57 HOH HOH . F 5 HOH A 57 214 58 HOH HOH . F 5 HOH A 58 215 59 HOH HOH . F 5 HOH A 59 216 60 HOH HOH . F 5 HOH A 60 217 61 HOH HOH . F 5 HOH A 61 218 62 HOH HOH . F 5 HOH A 62 219 63 HOH HOH . F 5 HOH A 63 220 64 HOH HOH . F 5 HOH A 64 221 65 HOH HOH . F 5 HOH A 65 222 66 HOH HOH . F 5 HOH A 66 223 67 HOH HOH . F 5 HOH A 67 224 68 HOH HOH . F 5 HOH A 68 225 69 HOH HOH . F 5 HOH A 69 226 70 HOH HOH . F 5 HOH A 70 227 71 HOH HOH . F 5 HOH A 71 228 72 HOH HOH . F 5 HOH A 72 229 73 HOH HOH . F 5 HOH A 73 230 74 HOH HOH . F 5 HOH A 74 231 75 HOH HOH . F 5 HOH A 75 232 76 HOH HOH . F 5 HOH A 76 233 77 HOH HOH . F 5 HOH A 77 234 78 HOH HOH . F 5 HOH A 78 235 79 HOH HOH . F 5 HOH A 79 236 80 HOH HOH . F 5 HOH A 80 237 81 HOH HOH . F 5 HOH A 81 238 82 HOH HOH . F 5 HOH A 82 239 83 HOH HOH . F 5 HOH A 83 240 84 HOH HOH . F 5 HOH A 84 241 85 HOH HOH . F 5 HOH A 85 242 86 HOH HOH . F 5 HOH A 86 243 87 HOH HOH . F 5 HOH A 87 244 88 HOH HOH . F 5 HOH A 88 245 89 HOH HOH . F 5 HOH A 89 246 90 HOH HOH . F 5 HOH A 90 247 91 HOH HOH . F 5 HOH A 91 248 92 HOH HOH . F 5 HOH A 92 249 93 HOH HOH . F 5 HOH A 93 250 94 HOH HOH . F 5 HOH A 94 251 95 HOH HOH . F 5 HOH A 95 252 96 HOH HOH . F 5 HOH A 96 253 97 HOH HOH . F 5 HOH A 97 254 98 HOH HOH . F 5 HOH A 98 255 99 HOH HOH . F 5 HOH A 99 256 100 HOH HOH . F 5 HOH A 100 257 101 HOH HOH . F 5 HOH A 101 258 102 HOH HOH . F 5 HOH A 102 259 103 HOH HOH . F 5 HOH A 103 260 104 HOH HOH . F 5 HOH A 104 261 105 HOH HOH . F 5 HOH A 105 262 106 HOH HOH . F 5 HOH A 106 263 107 HOH HOH . F 5 HOH A 107 264 108 HOH HOH . F 5 HOH A 108 265 109 HOH HOH . F 5 HOH A 109 266 110 HOH HOH . F 5 HOH A 110 267 111 HOH HOH . F 5 HOH A 111 268 112 HOH HOH . F 5 HOH A 112 269 113 HOH HOH . F 5 HOH A 113 270 114 HOH HOH . F 5 HOH A 114 271 115 HOH HOH . F 5 HOH A 115 272 116 HOH HOH . F 5 HOH A 116 273 117 HOH HOH . F 5 HOH A 117 274 118 HOH HOH . F 5 HOH A 118 275 119 HOH HOH . F 5 HOH A 119 276 120 HOH HOH . F 5 HOH A 120 277 122 HOH HOH . F 5 HOH A 121 278 123 HOH HOH . F 5 HOH A 122 279 124 HOH HOH . F 5 HOH A 123 280 125 HOH HOH . F 5 HOH A 124 281 126 HOH HOH . F 5 HOH A 125 282 127 HOH HOH . F 5 HOH A 126 283 128 HOH HOH . F 5 HOH A 127 284 129 HOH HOH . F 5 HOH A 128 285 130 HOH HOH . F 5 HOH A 129 286 131 HOH HOH . F 5 HOH A 130 287 132 HOH HOH . F 5 HOH A 131 288 133 HOH HOH . F 5 HOH A 132 289 134 HOH HOH . F 5 HOH A 133 290 135 HOH HOH . F 5 HOH A 134 291 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 -0.669 9.402 16.366 1 10.78 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 3 -4.227 6.208 15.363 1 10.79 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 3 -1.026 3.036 13.659 1 12.05 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 3 2.557 6.026 14.872 1 12.1 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 3 -1.908 8.824 16.193 1 13.49 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 3 -3.173 9.456 16.466 1 12.36 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 3 -4.149 8.566 16.178 1 12.62 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 3 -3.526 7.338 15.742 1 12.57 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 3 -5.679 8.732 16.294 1 11.27 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 3 -3.297 10.911 16.945 1 12.88 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 3 -3.738 11.83 15.783 1 13.75 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 3 -2.828 11.814 14.567 1 18.53 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 3 -1.624 12.205 14.703 1 16.42 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 3 -3.316 11.396 13.454 1 15.75 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 3 -3.677 5.069 14.817 1 12.52 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 3 -4.402 3.879 14.455 1 13.21 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 3 -3.507 3.001 13.968 1 14.77 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 3 -2.202 3.601 14.042 1 14.16 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 3 -5.939 3.703 14.592 1 11.67 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 3 -3.743 1.596 13.444 1 10.9 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 3 -4.525 0.747 14.132 1 17.44 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 3 0.24 3.52 13.884 1 11.94 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 3 1.457 2.807 13.659 1 12.84 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 3 2.467 3.622 14 1 16.2 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 3 1.902 4.89 14.459 1 11.05 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 3 1.509 1.364 13.098 1 14.73 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 3 3.952 3.216 13.878 1 16.03 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 3 4.894 3.624 14.703 1 22.13 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 3 2.027 7.206 15.37 1 14.46 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 3 2.829 8.282 15.886 1 12.61 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 3 1.848 9.343 16.332 1 14.86 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 3 0.529 8.781 16.105 1 14.33 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 3 4.383 8.372 15.929 1 11.18 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 3 2.229 10.679 17.003 1 13.3 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 3 2.151 10.383 18.497 1 20.06 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 3 2.391 11.636 19.327 1 24.84 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 3 1.432 12.246 19.858 1 27.84 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 3 3.575 12.031 19.472 1 27.52 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 3 -2.157 7.525 15.769 1 12.39 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 3 -2.335 4.875 14.536 1 13.81 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 3 0.558 4.758 14.368 1 12.48 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 3 0.67 7.523 15.498 1 13.92 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 3 -0.772 6.107 15.072 1 16.45 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #