data_2NSS # _model_server_result.job_id F3ZkO5qrh5WcgehDK_hU3w _model_server_result.datetime_utc '2024-11-23 22:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2NSS # _exptl.entry_id 2NSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.63 _cell.angle_gamma 90 _cell.entry_id 2NSS _cell.length_a 35.248 _cell.length_b 28.847 _cell.length_c 65.983 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 E N NBE . A NBE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 2NSS _atom_sites.fract_transf_matrix[1][1] 0.02837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 2 SO4 A 1 157 157 SO4 SO4 . D 3 HEM A 1 154 154 HEM HEM . E 4 NBE A 1 371 371 NBE NBE . F 4 NBE A 1 372 372 NBE NBE . G 4 NBE A 1 373 373 NBE NBE . H 4 NBE A 1 374 374 NBE NBE . I 4 NBE A 1 375 375 NBE NBE . J 5 HOH A 1 376 2 HOH HOH . J 5 HOH A 2 377 3 HOH HOH . J 5 HOH A 3 378 4 HOH HOH . J 5 HOH A 4 379 5 HOH HOH . J 5 HOH A 5 380 6 HOH HOH . J 5 HOH A 6 381 7 HOH HOH . J 5 HOH A 7 382 8 HOH HOH . J 5 HOH A 8 383 9 HOH HOH . J 5 HOH A 9 384 10 HOH HOH . J 5 HOH A 10 385 12 HOH HOH . J 5 HOH A 11 386 13 HOH HOH . J 5 HOH A 12 387 14 HOH HOH . J 5 HOH A 13 388 15 HOH HOH . J 5 HOH A 14 389 16 HOH HOH . J 5 HOH A 15 390 17 HOH HOH . J 5 HOH A 16 391 18 HOH HOH . J 5 HOH A 17 392 19 HOH HOH . J 5 HOH A 18 393 20 HOH HOH . J 5 HOH A 19 394 21 HOH HOH . J 5 HOH A 20 395 22 HOH HOH . J 5 HOH A 21 396 23 HOH HOH . J 5 HOH A 22 397 24 HOH HOH . J 5 HOH A 23 398 25 HOH HOH . J 5 HOH A 24 399 26 HOH HOH . J 5 HOH A 25 400 27 HOH HOH . J 5 HOH A 26 401 28 HOH HOH . J 5 HOH A 27 402 29 HOH HOH . J 5 HOH A 28 403 30 HOH HOH . J 5 HOH A 29 404 31 HOH HOH . J 5 HOH A 30 405 32 HOH HOH . J 5 HOH A 31 406 33 HOH HOH . J 5 HOH A 32 407 34 HOH HOH . J 5 HOH A 33 408 35 HOH HOH . J 5 HOH A 34 409 36 HOH HOH . J 5 HOH A 35 410 37 HOH HOH . J 5 HOH A 36 411 38 HOH HOH . J 5 HOH A 37 412 39 HOH HOH . J 5 HOH A 38 413 40 HOH HOH . J 5 HOH A 39 414 41 HOH HOH . J 5 HOH A 40 415 42 HOH HOH . J 5 HOH A 41 416 43 HOH HOH . J 5 HOH A 42 417 44 HOH HOH . J 5 HOH A 43 418 45 HOH HOH . J 5 HOH A 44 419 46 HOH HOH . J 5 HOH A 45 420 47 HOH HOH . J 5 HOH A 46 421 48 HOH HOH . J 5 HOH A 47 422 49 HOH HOH . J 5 HOH A 48 423 50 HOH HOH . J 5 HOH A 49 424 51 HOH HOH . J 5 HOH A 50 425 52 HOH HOH . J 5 HOH A 51 426 53 HOH HOH . J 5 HOH A 52 427 54 HOH HOH . J 5 HOH A 53 428 55 HOH HOH . J 5 HOH A 54 429 56 HOH HOH . J 5 HOH A 55 430 57 HOH HOH . J 5 HOH A 56 431 58 HOH HOH . J 5 HOH A 57 432 59 HOH HOH . J 5 HOH A 58 433 60 HOH HOH . J 5 HOH A 59 434 61 HOH HOH . J 5 HOH A 60 435 62 HOH HOH . J 5 HOH A 61 436 63 HOH HOH . J 5 HOH A 62 437 64 HOH HOH . J 5 HOH A 63 438 65 HOH HOH . J 5 HOH A 64 439 66 HOH HOH . J 5 HOH A 65 440 67 HOH HOH . J 5 HOH A 66 441 68 HOH HOH . J 5 HOH A 67 442 69 HOH HOH . J 5 HOH A 68 443 70 HOH HOH . J 5 HOH A 69 444 71 HOH HOH . J 5 HOH A 70 445 72 HOH HOH . J 5 HOH A 71 446 73 HOH HOH . J 5 HOH A 72 447 74 HOH HOH . J 5 HOH A 73 448 75 HOH HOH . J 5 HOH A 74 449 76 HOH HOH . J 5 HOH A 75 450 77 HOH HOH . J 5 HOH A 76 451 78 HOH HOH . J 5 HOH A 77 452 79 HOH HOH . J 5 HOH A 78 453 80 HOH HOH . J 5 HOH A 79 454 82 HOH HOH . J 5 HOH A 80 455 83 HOH HOH . J 5 HOH A 81 456 84 HOH HOH . J 5 HOH A 82 457 85 HOH HOH . J 5 HOH A 83 458 86 HOH HOH . J 5 HOH A 84 459 90 HOH HOH . J 5 HOH A 85 460 91 HOH HOH . J 5 HOH A 86 461 93 HOH HOH . J 5 HOH A 87 462 94 HOH HOH . J 5 HOH A 88 463 96 HOH HOH . J 5 HOH A 89 464 97 HOH HOH . J 5 HOH A 90 465 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 -0.707 9.945 16.415 1 17.13 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . D 3 -4.209 6.504 15.703 1 18.26 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . D 3 -0.841 3.419 14.011 1 18.77 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . D 3 2.701 6.622 15.226 1 16.25 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . D 3 -1.93 9.271 16.347 1 20.28 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . D 3 -3.237 9.861 16.628 1 19.17 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . D 3 -4.198 8.921 16.471 1 17.98 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . D 3 -3.549 7.697 16.042 1 20.54 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . D 3 -5.73 9.082 16.666 1 17.93 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . D 3 -3.349 11.335 17.055 1 18.39 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . D 3 -3.775 12.287 15.948 1 20.07 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . D 3 -2.949 12.286 14.647 1 23.43 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . D 3 -1.736 12.657 14.714 1 19.72 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . D 3 -3.495 11.909 13.524 1 18.61 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . D 3 -3.645 5.413 15.113 1 17.2 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . D 3 -4.332 4.247 14.631 1 20.26 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . D 3 -3.376 3.376 14.207 1 19.82 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . D 3 -2.075 3.974 14.381 1 21.65 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . D 3 -5.875 4.024 14.643 1 18.13 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . D 3 -3.577 1.985 13.557 1 22.71 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . D 3 -4.443 1.119 14.101 1 25.56 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . D 3 0.422 3.974 14.292 1 19.21 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . D 3 1.67 3.26 14.27 1 19.96 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . D 3 2.648 4.157 14.608 1 18.13 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . D 3 2.035 5.449 14.867 1 15.7 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . D 3 1.726 1.737 13.892 1 17.71 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . D 3 4.186 3.967 14.789 1 18.1 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . D 3 4.727 2.77 14.709 1 23.32 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . D 3 2.137 7.804 15.642 1 19.21 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . D 3 2.869 8.988 16.023 1 19.41 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . D 3 1.81 9.985 16.388 1 21.98 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . D 3 0.522 9.359 16.199 1 20.81 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . D 3 4.403 9.174 16.087 1 20.44 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . D 3 2.037 11.409 16.904 1 24.99 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . D 3 1.959 11.226 18.403 1 29.45 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . D 3 1.575 12.537 19.048 1 33.12 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . D 3 1.984 12.618 20.229 1 33.18 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . D 3 0.842 13.439 18.46 1 31.91 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . D 3 -2.171 7.961 15.968 1 19.24 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . D 3 -2.261 5.205 14.969 1 19.11 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . D 3 0.685 5.287 14.67 1 17.31 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . D 3 0.755 8.072 15.755 1 20.78 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . D 3 -0.707 6.634 15.347 1 23.34 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #