data_2NSS # _model_server_result.job_id lyIgVVJk3xPBN8TocmFsBA _model_server_result.datetime_utc '2024-11-23 22:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":374}' # _entry.id 2NSS # _exptl.entry_id 2NSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.11 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NITROSOBENZENE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.63 _cell.angle_gamma 90 _cell.entry_id 2NSS _cell.length_a 35.248 _cell.length_b 28.847 _cell.length_c 65.983 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 D FE HEM . A HEM 154 1_555 E N NBE . A NBE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C6 H5 N O' _chem_comp.formula_weight 107.11 _chem_comp.id NBE _chem_comp.mon_nstd_flag . _chem_comp.name NITROSOBENZENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N NBE sing 306 n n C1 C2 NBE doub 307 n y C1 C6 NBE sing 308 n y N O NBE doub 309 n n C2 C3 NBE sing 310 n y C2 H2 NBE sing 311 n n C3 C4 NBE doub 312 n y C3 H3 NBE sing 313 n n C4 C5 NBE sing 314 n y C4 H4 NBE sing 315 n n C5 C6 NBE doub 316 n y C5 H5 NBE sing 317 n n C6 H6 NBE sing 318 n n # _atom_sites.entry_id 2NSS _atom_sites.fract_transf_matrix[1][1] 0.02837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007939 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015738 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 2 SO4 A 1 157 157 SO4 SO4 . D 3 HEM A 1 154 154 HEM HEM . E 4 NBE A 1 371 371 NBE NBE . F 4 NBE A 1 372 372 NBE NBE . G 4 NBE A 1 373 373 NBE NBE . H 4 NBE A 1 374 374 NBE NBE . I 4 NBE A 1 375 375 NBE NBE . J 5 HOH A 1 376 2 HOH HOH . J 5 HOH A 2 377 3 HOH HOH . J 5 HOH A 3 378 4 HOH HOH . J 5 HOH A 4 379 5 HOH HOH . J 5 HOH A 5 380 6 HOH HOH . J 5 HOH A 6 381 7 HOH HOH . J 5 HOH A 7 382 8 HOH HOH . J 5 HOH A 8 383 9 HOH HOH . J 5 HOH A 9 384 10 HOH HOH . J 5 HOH A 10 385 12 HOH HOH . J 5 HOH A 11 386 13 HOH HOH . J 5 HOH A 12 387 14 HOH HOH . J 5 HOH A 13 388 15 HOH HOH . J 5 HOH A 14 389 16 HOH HOH . J 5 HOH A 15 390 17 HOH HOH . J 5 HOH A 16 391 18 HOH HOH . J 5 HOH A 17 392 19 HOH HOH . J 5 HOH A 18 393 20 HOH HOH . J 5 HOH A 19 394 21 HOH HOH . J 5 HOH A 20 395 22 HOH HOH . J 5 HOH A 21 396 23 HOH HOH . J 5 HOH A 22 397 24 HOH HOH . J 5 HOH A 23 398 25 HOH HOH . J 5 HOH A 24 399 26 HOH HOH . J 5 HOH A 25 400 27 HOH HOH . J 5 HOH A 26 401 28 HOH HOH . J 5 HOH A 27 402 29 HOH HOH . J 5 HOH A 28 403 30 HOH HOH . J 5 HOH A 29 404 31 HOH HOH . J 5 HOH A 30 405 32 HOH HOH . J 5 HOH A 31 406 33 HOH HOH . J 5 HOH A 32 407 34 HOH HOH . J 5 HOH A 33 408 35 HOH HOH . J 5 HOH A 34 409 36 HOH HOH . J 5 HOH A 35 410 37 HOH HOH . J 5 HOH A 36 411 38 HOH HOH . J 5 HOH A 37 412 39 HOH HOH . J 5 HOH A 38 413 40 HOH HOH . J 5 HOH A 39 414 41 HOH HOH . J 5 HOH A 40 415 42 HOH HOH . J 5 HOH A 41 416 43 HOH HOH . J 5 HOH A 42 417 44 HOH HOH . J 5 HOH A 43 418 45 HOH HOH . J 5 HOH A 44 419 46 HOH HOH . J 5 HOH A 45 420 47 HOH HOH . J 5 HOH A 46 421 48 HOH HOH . J 5 HOH A 47 422 49 HOH HOH . J 5 HOH A 48 423 50 HOH HOH . J 5 HOH A 49 424 51 HOH HOH . J 5 HOH A 50 425 52 HOH HOH . J 5 HOH A 51 426 53 HOH HOH . J 5 HOH A 52 427 54 HOH HOH . J 5 HOH A 53 428 55 HOH HOH . J 5 HOH A 54 429 56 HOH HOH . J 5 HOH A 55 430 57 HOH HOH . J 5 HOH A 56 431 58 HOH HOH . J 5 HOH A 57 432 59 HOH HOH . J 5 HOH A 58 433 60 HOH HOH . J 5 HOH A 59 434 61 HOH HOH . J 5 HOH A 60 435 62 HOH HOH . J 5 HOH A 61 436 63 HOH HOH . J 5 HOH A 62 437 64 HOH HOH . J 5 HOH A 63 438 65 HOH HOH . J 5 HOH A 64 439 66 HOH HOH . J 5 HOH A 65 440 67 HOH HOH . J 5 HOH A 66 441 68 HOH HOH . J 5 HOH A 67 442 69 HOH HOH . J 5 HOH A 68 443 70 HOH HOH . J 5 HOH A 69 444 71 HOH HOH . J 5 HOH A 70 445 72 HOH HOH . J 5 HOH A 71 446 73 HOH HOH . J 5 HOH A 72 447 74 HOH HOH . J 5 HOH A 73 448 75 HOH HOH . J 5 HOH A 74 449 76 HOH HOH . J 5 HOH A 75 450 77 HOH HOH . J 5 HOH A 76 451 78 HOH HOH . J 5 HOH A 77 452 79 HOH HOH . J 5 HOH A 78 453 80 HOH HOH . J 5 HOH A 79 454 82 HOH HOH . J 5 HOH A 80 455 83 HOH HOH . J 5 HOH A 81 456 84 HOH HOH . J 5 HOH A 82 457 85 HOH HOH . J 5 HOH A 83 458 86 HOH HOH . J 5 HOH A 84 459 90 HOH HOH . J 5 HOH A 85 460 91 HOH HOH . J 5 HOH A 86 461 93 HOH HOH . J 5 HOH A 87 462 94 HOH HOH . J 5 HOH A 88 463 96 HOH HOH . J 5 HOH A 89 464 97 HOH HOH . J 5 HOH A 90 465 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NBE . . . H 4 2.861 3.231 -2.679 1 26.43 ? C1 NBE 374 A 1 HETATM 2 N N NBE . . . H 4 3.765 4.284 -2.759 1 28.18 ? N NBE 374 A 1 HETATM 3 O O NBE . . . H 4 3.784 5.114 -3.649 1 29.63 ? O NBE 374 A 1 HETATM 4 C C2 NBE . . . H 4 2.574 2.451 -3.788 1 26.6 ? C2 NBE 374 A 1 HETATM 5 C C3 NBE . . . H 4 1.658 1.384 -3.636 1 24.83 ? C3 NBE 374 A 1 HETATM 6 C C4 NBE . . . H 4 1.053 1.137 -2.385 1 26.76 ? C4 NBE 374 A 1 HETATM 7 C C5 NBE . . . H 4 1.352 1.928 -1.264 1 22.19 ? C5 NBE 374 A 1 HETATM 8 C C6 NBE . . . H 4 2.274 2.976 -1.428 1 27.52 ? C6 NBE 374 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #