data_2NTF # _model_server_result.job_id EH-VhfcHvzMlVmb1Ml2gWA _model_server_result.datetime_utc '2024-11-22 22:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ntf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 2NTF # _exptl.entry_id 2NTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-OXO-N-[(3S)-2-OXOPYRROLIDIN-3-YL]DODECANAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NTF _cell.length_a 118.659 _cell.length_b 118.659 _cell.length_c 176.042 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D,F 2 1 A,B,C,D,E,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 L CYS 23 1_555 A SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf2 A SG CYS 137 L CYS 134 1_555 A SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf4 B SG CYS 149 H CYS 142 1_555 B SG CYS 204 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 C SG CYS 22 A CYS 23 1_555 C SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf6 C SG CYS 137 A CYS 134 1_555 C SG CYS 196 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf8 D SG CYS 149 B CYS 142 1_555 D SG CYS 204 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C16 H28 N2 O3' _chem_comp.formula_weight 296.405 _chem_comp.id OHM _chem_comp.mon_nstd_flag . _chem_comp.name 3-OXO-N-[(3S)-2-OXOPYRROLIDIN-3-YL]DODECANAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 OHM sing 235 n n C21 H211 OHM sing 236 n n C21 H212 OHM sing 237 n n C21 H213 OHM sing 238 n n C20 C19 OHM sing 239 n n C20 H201 OHM sing 240 n n C20 H202 OHM sing 241 n n C19 C18 OHM sing 242 n n C19 H191 OHM sing 243 n n C19 H192 OHM sing 244 n n C18 C17 OHM sing 245 n n C18 H181 OHM sing 246 n n C18 H182 OHM sing 247 n n C17 C16 OHM sing 248 n n C17 H171 OHM sing 249 n n C17 H172 OHM sing 250 n n C16 C15 OHM sing 251 n n C16 H161 OHM sing 252 n n C16 H162 OHM sing 253 n n C15 C14 OHM sing 254 n n C15 H151 OHM sing 255 n n C15 H152 OHM sing 256 n n C14 C13 OHM sing 257 n n C14 H141 OHM sing 258 n n C14 H142 OHM sing 259 n n C13 C11 OHM sing 260 n n C13 H131 OHM sing 261 n n C13 H132 OHM sing 262 n n C11 C10 OHM sing 263 n n C11 O12 OHM doub 264 n n C10 C8 OHM sing 265 n n C10 H101 OHM sing 266 n n C10 H102 OHM sing 267 n n C8 O9 OHM doub 268 n n C8 N7 OHM sing 269 n n N7 C1 OHM sing 270 n n N7 HN7 OHM sing 271 n n C1 C2 OHM sing 272 n n C1 C5 OHM sing 273 n n C1 H1 OHM sing 274 n n C5 C4 OHM sing 275 n n C5 H51 OHM sing 276 n n C5 H52 OHM sing 277 n n C4 N3 OHM sing 278 n n C4 H41 OHM sing 279 n n C4 H42 OHM sing 280 n n N3 C2 OHM sing 281 n n N3 HN3 OHM sing 282 n n C2 O6 OHM doub 283 n n # _atom_sites.entry_id 2NTF _atom_sites.fract_transf_matrix[1][1] 0.008428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OHM H 1 1001 1001 OHM OHM . F 3 OHM B 1 1002 1002 OHM OHM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 OHM . . . E 3 -34.895 17.683 2.613 1 66.7 ? C21 OHM 1001 H 1 HETATM 2 C C20 OHM . . . E 3 -33.384 17.454 2.95 1 69.28 ? C20 OHM 1001 H 1 HETATM 3 C C19 OHM . . . E 3 -32.863 16.095 2.342 1 69.74 ? C19 OHM 1001 H 1 HETATM 4 C C18 OHM . . . E 3 -31.302 15.811 2.561 1 68.56 ? C18 OHM 1001 H 1 HETATM 5 C C17 OHM . . . E 3 -30.941 14.335 2.073 1 65.55 ? C17 OHM 1001 H 1 HETATM 6 C C16 OHM . . . E 3 -29.453 14.098 1.701 1 62.08 ? C16 OHM 1001 H 1 HETATM 7 C C15 OHM . . . E 3 -29.189 12.75 0.992 1 59.32 ? C15 OHM 1001 H 1 HETATM 8 C C14 OHM . . . E 3 -28.866 11.603 1.981 1 57.73 ? C14 OHM 1001 H 1 HETATM 9 C C13 OHM . . . E 3 -27.907 10.495 1.47 1 55.41 ? C13 OHM 1001 H 1 HETATM 10 C C11 OHM . . . E 3 -28.659 9.222 0.993 1 53.28 ? C11 OHM 1001 H 1 HETATM 11 O O12 OHM . . . E 3 -29.007 8.34 1.774 1 50.82 ? O12 OHM 1001 H 1 HETATM 12 C C10 OHM . . . E 3 -28.965 9.126 -0.504 1 51.64 ? C10 OHM 1001 H 1 HETATM 13 C C8 OHM . . . E 3 -29.354 7.752 -0.979 1 50.19 ? C8 OHM 1001 H 1 HETATM 14 O O9 OHM . . . E 3 -28.524 6.914 -1.312 1 49.31 ? O9 OHM 1001 H 1 HETATM 15 N N7 OHM . . . E 3 -30.643 7.549 -1.036 1 50.3 ? N7 OHM 1001 H 1 HETATM 16 C C1 OHM . . . E 3 -31.161 6.282 -1.539 1 51.17 ? C1 OHM 1001 H 1 HETATM 17 C C5 OHM . . . E 3 -31.349 5.256 -0.453 1 51.97 ? C5 OHM 1001 H 1 HETATM 18 C C4 OHM . . . E 3 -32.606 4.519 -0.946 1 52.7 ? C4 OHM 1001 H 1 HETATM 19 N N3 OHM . . . E 3 -33.391 5.551 -1.645 1 52.93 ? N3 OHM 1001 H 1 HETATM 20 C C2 OHM . . . E 3 -32.588 6.55 -1.982 1 52.8 ? C2 OHM 1001 H 1 HETATM 21 O O6 OHM . . . E 3 -32.953 7.576 -2.562 1 54.31 ? O6 OHM 1001 H 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #