data_2NTH # _model_server_result.job_id KoJR8VNjIHQ7PtX1hVSsqQ _model_server_result.datetime_utc '2024-11-23 11:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2NTH # _exptl.entry_id 2NTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NTH _cell.length_a 59.761 _cell.length_b 59.761 _cell.length_c 95.005 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 118 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 118 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id MTN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MTN _struct_conn.ptnr2_auth_seq_id 200 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.973 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 237 n n N1 C1 MTN sing 238 n n N1 C5 MTN sing 239 n n C1 C2 MTN sing 240 n n C1 C8 MTN sing 241 n n C1 C9 MTN sing 242 n n C2 C3 MTN doub 243 n n C2 H2 MTN sing 244 n n C3 C4 MTN sing 245 n n C3 C5 MTN sing 246 n n C4 S1 MTN sing 247 n n C4 H41 MTN sing 248 n n C4 H42 MTN sing 249 n n C5 C6 MTN sing 250 n n C5 C7 MTN sing 251 n n C6 H61 MTN sing 252 n n C6 H62 MTN sing 253 n n C6 H63 MTN sing 254 n n C7 H71 MTN sing 255 n n C7 H72 MTN sing 256 n n C7 H73 MTN sing 257 n n C8 H81 MTN sing 258 n n C8 H82 MTN sing 259 n n C8 H83 MTN sing 260 n n C9 H91 MTN sing 261 n n C9 H92 MTN sing 262 n n C9 H93 MTN sing 263 n n S1 S2 MTN sing 264 n n S2 O2 MTN doub 265 n n S2 O3 MTN doub 266 n n S2 C12 MTN sing 267 n n C12 H4 MTN sing 268 n n C12 H1 MTN sing 269 n n C12 H3 MTN sing 270 n n # _atom_sites.entry_id 2NTH _atom_sites.fract_transf_matrix[1][1] 0.016733 _atom_sites.fract_transf_matrix[1][2] 0.009661 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 200 200 MTN MTN . C 3 HOH A 1 201 201 HOH HOH . C 3 HOH A 2 202 202 HOH HOH . C 3 HOH A 3 203 203 HOH HOH . C 3 HOH A 4 204 204 HOH HOH . C 3 HOH A 5 205 205 HOH HOH . C 3 HOH A 6 206 206 HOH HOH . C 3 HOH A 7 207 207 HOH HOH . C 3 HOH A 8 208 208 HOH HOH . C 3 HOH A 9 209 209 HOH HOH . C 3 HOH A 10 210 210 HOH HOH . C 3 HOH A 11 211 211 HOH HOH . C 3 HOH A 12 212 212 HOH HOH . C 3 HOH A 13 213 213 HOH HOH . C 3 HOH A 14 214 214 HOH HOH . C 3 HOH A 15 215 215 HOH HOH . C 3 HOH A 16 216 216 HOH HOH . C 3 HOH A 17 217 217 HOH HOH . C 3 HOH A 18 218 218 HOH HOH . C 3 HOH A 19 219 219 HOH HOH . C 3 HOH A 20 220 220 HOH HOH . C 3 HOH A 21 221 221 HOH HOH . C 3 HOH A 22 222 222 HOH HOH . C 3 HOH A 23 223 223 HOH HOH . C 3 HOH A 24 224 224 HOH HOH . C 3 HOH A 25 225 225 HOH HOH . C 3 HOH A 26 226 226 HOH HOH . C 3 HOH A 27 227 227 HOH HOH . C 3 HOH A 28 228 228 HOH HOH . C 3 HOH A 29 229 229 HOH HOH . C 3 HOH A 30 230 230 HOH HOH . C 3 HOH A 31 231 231 HOH HOH . C 3 HOH A 32 232 232 HOH HOH . C 3 HOH A 33 233 233 HOH HOH . C 3 HOH A 34 234 234 HOH HOH . C 3 HOH A 35 235 235 HOH HOH . C 3 HOH A 36 236 236 HOH HOH . C 3 HOH A 37 237 237 HOH HOH . C 3 HOH A 38 238 238 HOH HOH . C 3 HOH A 39 239 239 HOH HOH . C 3 HOH A 40 240 240 HOH HOH . C 3 HOH A 41 241 241 HOH HOH . C 3 HOH A 42 242 242 HOH HOH . C 3 HOH A 43 243 243 HOH HOH . C 3 HOH A 44 244 244 HOH HOH . C 3 HOH A 45 245 245 HOH HOH . C 3 HOH A 46 246 246 HOH HOH . C 3 HOH A 47 247 247 HOH HOH . C 3 HOH A 48 248 248 HOH HOH . C 3 HOH A 49 249 249 HOH HOH . C 3 HOH A 50 250 250 HOH HOH . C 3 HOH A 51 251 251 HOH HOH . C 3 HOH A 52 252 252 HOH HOH . C 3 HOH A 53 253 253 HOH HOH . C 3 HOH A 54 254 254 HOH HOH . C 3 HOH A 55 255 255 HOH HOH . C 3 HOH A 56 256 256 HOH HOH . C 3 HOH A 57 257 257 HOH HOH . C 3 HOH A 58 258 258 HOH HOH . C 3 HOH A 59 259 259 HOH HOH . C 3 HOH A 60 260 260 HOH HOH . C 3 HOH A 61 261 261 HOH HOH . C 3 HOH A 62 262 262 HOH HOH . C 3 HOH A 63 263 263 HOH HOH . C 3 HOH A 64 264 264 HOH HOH . C 3 HOH A 65 265 265 HOH HOH . C 3 HOH A 66 266 266 HOH HOH . C 3 HOH A 67 267 267 HOH HOH . C 3 HOH A 68 268 268 HOH HOH . C 3 HOH A 69 269 269 HOH HOH . C 3 HOH A 70 270 270 HOH HOH . C 3 HOH A 71 271 271 HOH HOH . C 3 HOH A 72 273 273 HOH HOH . C 3 HOH A 73 274 274 HOH HOH . C 3 HOH A 74 275 275 HOH HOH . C 3 HOH A 75 277 277 HOH HOH . C 3 HOH A 76 278 278 HOH HOH . C 3 HOH A 77 279 279 HOH HOH . C 3 HOH A 78 280 280 HOH HOH . C 3 HOH A 79 282 282 HOH HOH . C 3 HOH A 80 284 284 HOH HOH . C 3 HOH A 81 285 285 HOH HOH . C 3 HOH A 82 289 289 HOH HOH . C 3 HOH A 83 290 290 HOH HOH . C 3 HOH A 84 291 291 HOH HOH . C 3 HOH A 85 292 292 HOH HOH . C 3 HOH A 86 293 293 HOH HOH . C 3 HOH A 87 294 294 HOH HOH . C 3 HOH A 88 295 295 HOH HOH . C 3 HOH A 89 296 296 HOH HOH . C 3 HOH A 90 297 297 HOH HOH . C 3 HOH A 91 298 298 HOH HOH . C 3 HOH A 92 299 299 HOH HOH . C 3 HOH A 93 300 300 HOH HOH . C 3 HOH A 94 301 301 HOH HOH . C 3 HOH A 95 302 302 HOH HOH . C 3 HOH A 96 303 303 HOH HOH . C 3 HOH A 97 304 304 HOH HOH . C 3 HOH A 98 305 305 HOH HOH . C 3 HOH A 99 306 306 HOH HOH . C 3 HOH A 100 307 307 HOH HOH . C 3 HOH A 101 309 309 HOH HOH . C 3 HOH A 102 310 310 HOH HOH . C 3 HOH A 103 311 311 HOH HOH . C 3 HOH A 104 312 312 HOH HOH . C 3 HOH A 105 313 313 HOH HOH . C 3 HOH A 106 314 314 HOH HOH . C 3 HOH A 107 315 315 HOH HOH . C 3 HOH A 108 316 316 HOH HOH . C 3 HOH A 109 317 317 HOH HOH . C 3 HOH A 110 318 318 HOH HOH . C 3 HOH A 111 319 319 HOH HOH . C 3 HOH A 112 320 320 HOH HOH . C 3 HOH A 113 321 321 HOH HOH . C 3 HOH A 114 322 322 HOH HOH . C 3 HOH A 115 323 323 HOH HOH . C 3 HOH A 116 324 324 HOH HOH . C 3 HOH A 117 325 325 HOH HOH . C 3 HOH A 118 326 326 HOH HOH . C 3 HOH A 119 327 327 HOH HOH . C 3 HOH A 120 328 328 HOH HOH . C 3 HOH A 121 331 331 HOH HOH . C 3 HOH A 122 332 332 HOH HOH . C 3 HOH A 123 333 333 HOH HOH . C 3 HOH A 124 334 334 HOH HOH . C 3 HOH A 125 335 335 HOH HOH . C 3 HOH A 126 337 337 HOH HOH . C 3 HOH A 127 338 338 HOH HOH . C 3 HOH A 128 339 339 HOH HOH . C 3 HOH A 129 340 340 HOH HOH . C 3 HOH A 130 341 341 HOH HOH . C 3 HOH A 131 342 342 HOH HOH . C 3 HOH A 132 344 344 HOH HOH . C 3 HOH A 133 345 345 HOH HOH . C 3 HOH A 134 346 346 HOH HOH . C 3 HOH A 135 347 347 HOH HOH . C 3 HOH A 136 348 348 HOH HOH . C 3 HOH A 137 349 349 HOH HOH . C 3 HOH A 138 350 350 HOH HOH . C 3 HOH A 139 351 351 HOH HOH . C 3 HOH A 140 352 352 HOH HOH . C 3 HOH A 141 353 353 HOH HOH . C 3 HOH A 142 354 354 HOH HOH . C 3 HOH A 143 355 355 HOH HOH . C 3 HOH A 144 356 356 HOH HOH . C 3 HOH A 145 360 360 HOH HOH . C 3 HOH A 146 361 361 HOH HOH . C 3 HOH A 147 362 362 HOH HOH . C 3 HOH A 148 363 363 HOH HOH . C 3 HOH A 149 364 364 HOH HOH . C 3 HOH A 150 365 365 HOH HOH . C 3 HOH A 151 366 366 HOH HOH . C 3 HOH A 152 367 367 HOH HOH . C 3 HOH A 153 368 368 HOH HOH . C 3 HOH A 154 369 369 HOH HOH . C 3 HOH A 155 370 370 HOH HOH . C 3 HOH A 156 372 372 HOH HOH . C 3 HOH A 157 373 373 HOH HOH . C 3 HOH A 158 374 374 HOH HOH . C 3 HOH A 159 375 375 HOH HOH . C 3 HOH A 160 376 376 HOH HOH . C 3 HOH A 161 377 377 HOH HOH . C 3 HOH A 162 378 378 HOH HOH . C 3 HOH A 163 379 379 HOH HOH . C 3 HOH A 164 380 380 HOH HOH . C 3 HOH A 165 381 381 HOH HOH . C 3 HOH A 166 382 382 HOH HOH . C 3 HOH A 167 383 383 HOH HOH . C 3 HOH A 168 384 384 HOH HOH . C 3 HOH A 169 385 385 HOH HOH . C 3 HOH A 170 386 386 HOH HOH . C 3 HOH A 171 387 387 HOH HOH . C 3 HOH A 172 388 388 HOH HOH . C 3 HOH A 173 389 389 HOH HOH . C 3 HOH A 174 391 391 HOH HOH . C 3 HOH A 175 392 392 HOH HOH . C 3 HOH A 176 393 393 HOH HOH . C 3 HOH A 177 394 394 HOH HOH . C 3 HOH A 178 395 395 HOH HOH . C 3 HOH A 179 396 396 HOH HOH . C 3 HOH A 180 397 397 HOH HOH . C 3 HOH A 181 398 398 HOH HOH . C 3 HOH A 182 399 399 HOH HOH . C 3 HOH A 183 400 400 HOH HOH . C 3 HOH A 184 401 401 HOH HOH . C 3 HOH A 185 402 402 HOH HOH . C 3 HOH A 186 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . B 2 -6.245 35.857 68.89 1 37.11 ? O1 MTN 200 A 1 HETATM 2 N N1 MTN . . . B 2 -6.927 35.753 67.894 1 36.54 ? N1 MTN 200 A 1 HETATM 3 C C1 MTN . . . B 2 -7.539 37.016 67.263 1 32.81 ? C1 MTN 200 A 1 HETATM 4 C C2 MTN . . . B 2 -8.235 36.335 66.106 1 32.39 ? C2 MTN 200 A 1 HETATM 5 C C3 MTN . . . B 2 -7.929 35.025 65.914 1 32.84 ? C3 MTN 200 A 1 HETATM 6 C C4 MTN . . . B 2 -8.374 34.131 64.703 1 34.36 ? C4 MTN 200 A 1 HETATM 7 S S1 MTN . . . B 2 -10.089 33.58 64.676 1 34.54 ? S1 MTN 200 A 1 HETATM 8 C C5 MTN . . . B 2 -7.029 34.533 67.047 1 34.96 ? C5 MTN 200 A 1 HETATM 9 C C6 MTN . . . B 2 -5.584 34.036 66.623 1 33.95 ? C6 MTN 200 A 1 HETATM 10 C C7 MTN . . . B 2 -7.796 33.504 67.849 1 29.17 ? C7 MTN 200 A 1 HETATM 11 C C8 MTN . . . B 2 -8.569 37.743 68.204 1 34.82 ? C8 MTN 200 A 1 HETATM 12 C C9 MTN . . . B 2 -6.45 38.034 66.758 1 35.35 ? C9 MTN 200 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #