data_2NTO # _model_server_result.job_id ABfh_EZfDjFatWF3HVRoWw _model_server_result.datetime_utc '2025-03-04 22:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":204}' # _entry.id 2NTO # _exptl.entry_id 2NTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NTO _cell.length_a 58.765 _cell.length_b 58.765 _cell.length_c 212.323 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 58.765 0 106.1615 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 2NTO _atom_sites.fract_transf_matrix[1][1] 0.017017 _atom_sites.fract_transf_matrix[1][2] 0.009825 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 202 1 SO4 SO4 . C 3 GSH A 1 204 204 GSH GTT . D 4 HOH A 1 205 2 HOH HOH . D 4 HOH A 2 206 3 HOH HOH . D 4 HOH A 3 207 5 HOH HOH . D 4 HOH A 4 208 6 HOH HOH . D 4 HOH A 5 209 8 HOH HOH . D 4 HOH A 6 210 9 HOH HOH . D 4 HOH A 7 211 10 HOH HOH . D 4 HOH A 8 212 12 HOH HOH . D 4 HOH A 9 213 13 HOH HOH . D 4 HOH A 10 214 14 HOH HOH . D 4 HOH A 11 215 15 HOH HOH . D 4 HOH A 12 216 16 HOH HOH . D 4 HOH A 13 217 18 HOH HOH . D 4 HOH A 14 218 19 HOH HOH . D 4 HOH A 15 219 20 HOH HOH . D 4 HOH A 16 220 21 HOH HOH . D 4 HOH A 17 221 22 HOH HOH . D 4 HOH A 18 222 23 HOH HOH . D 4 HOH A 19 223 24 HOH HOH . D 4 HOH A 20 224 25 HOH HOH . D 4 HOH A 21 225 26 HOH HOH . D 4 HOH A 22 226 27 HOH HOH . D 4 HOH A 23 227 28 HOH HOH . D 4 HOH A 24 228 29 HOH HOH . D 4 HOH A 25 229 30 HOH HOH . D 4 HOH A 26 230 31 HOH HOH . D 4 HOH A 27 231 33 HOH HOH . D 4 HOH A 28 232 34 HOH HOH . D 4 HOH A 29 233 35 HOH HOH . D 4 HOH A 30 234 36 HOH HOH . D 4 HOH A 31 235 37 HOH HOH . D 4 HOH A 32 236 38 HOH HOH . D 4 HOH A 33 237 39 HOH HOH . D 4 HOH A 34 238 40 HOH HOH . D 4 HOH A 35 239 41 HOH HOH . D 4 HOH A 36 240 42 HOH HOH . D 4 HOH A 37 241 43 HOH HOH . D 4 HOH A 38 242 44 HOH HOH . D 4 HOH A 39 243 45 HOH HOH . D 4 HOH A 40 244 46 HOH HOH . D 4 HOH A 41 245 47 HOH HOH . D 4 HOH A 42 246 48 HOH HOH . D 4 HOH A 43 247 49 HOH HOH . D 4 HOH A 44 248 50 HOH HOH . D 4 HOH A 45 249 53 HOH HOH . D 4 HOH A 46 250 54 HOH HOH . D 4 HOH A 47 251 55 HOH HOH . D 4 HOH A 48 252 57 HOH HOH . D 4 HOH A 49 253 58 HOH HOH . D 4 HOH A 50 254 59 HOH HOH . D 4 HOH A 51 255 62 HOH HOH . D 4 HOH A 52 256 65 HOH HOH . D 4 HOH A 53 257 67 HOH HOH . D 4 HOH A 54 258 68 HOH HOH . D 4 HOH A 55 259 69 HOH HOH . D 4 HOH A 56 260 70 HOH HOH . D 4 HOH A 57 261 72 HOH HOH . D 4 HOH A 58 262 75 HOH HOH . D 4 HOH A 59 263 79 HOH HOH . D 4 HOH A 60 264 84 HOH HOH . D 4 HOH A 61 265 87 HOH HOH . D 4 HOH A 62 266 88 HOH HOH . D 4 HOH A 63 267 90 HOH HOH . D 4 HOH A 64 268 91 HOH HOH . D 4 HOH A 65 269 92 HOH HOH . D 4 HOH A 66 270 94 HOH HOH . D 4 HOH A 67 271 96 HOH HOH . D 4 HOH A 68 272 98 HOH HOH . D 4 HOH A 69 273 99 HOH HOH . D 4 HOH A 70 274 100 HOH HOH . D 4 HOH A 71 275 101 HOH HOH . D 4 HOH A 72 276 103 HOH HOH . D 4 HOH A 73 277 106 HOH HOH . D 4 HOH A 74 278 110 HOH HOH . D 4 HOH A 75 279 111 HOH HOH . D 4 HOH A 76 280 112 HOH HOH . D 4 HOH A 77 281 113 HOH HOH . D 4 HOH A 78 282 115 HOH HOH . D 4 HOH A 79 283 116 HOH HOH . D 4 HOH A 80 284 118 HOH HOH . D 4 HOH A 81 285 123 HOH HOH . D 4 HOH A 82 286 124 HOH HOH . D 4 HOH A 83 287 129 HOH HOH . D 4 HOH A 84 288 132 HOH HOH . D 4 HOH A 85 289 133 HOH HOH . D 4 HOH A 86 290 134 HOH HOH . D 4 HOH A 87 291 135 HOH HOH . D 4 HOH A 88 292 136 HOH HOH . D 4 HOH A 89 293 137 HOH HOH . D 4 HOH A 90 294 138 HOH HOH . D 4 HOH A 91 295 139 HOH HOH . D 4 HOH A 92 296 140 HOH HOH . D 4 HOH A 93 297 141 HOH HOH . D 4 HOH A 94 298 142 HOH HOH . D 4 HOH A 95 299 143 HOH HOH . D 4 HOH A 96 300 144 HOH HOH . D 4 HOH A 97 301 145 HOH HOH . D 4 HOH A 98 302 146 HOH HOH . D 4 HOH A 99 303 147 HOH HOH . D 4 HOH A 100 304 148 HOH HOH . D 4 HOH A 101 305 149 HOH HOH . D 4 HOH A 102 306 150 HOH HOH . D 4 HOH A 103 307 151 HOH HOH . D 4 HOH A 104 308 152 HOH HOH . D 4 HOH A 105 309 153 HOH HOH . D 4 HOH A 106 310 154 HOH HOH . D 4 HOH A 107 311 155 HOH HOH . D 4 HOH A 108 312 156 HOH HOH . D 4 HOH A 109 313 157 HOH HOH . D 4 HOH A 110 314 158 HOH HOH . D 4 HOH A 111 315 159 HOH HOH . D 4 HOH A 112 316 161 HOH HOH . D 4 HOH A 113 317 162 HOH HOH . D 4 HOH A 114 318 163 HOH HOH . D 4 HOH A 115 319 164 HOH HOH . D 4 HOH A 116 320 165 HOH HOH . D 4 HOH A 117 321 166 HOH HOH . D 4 HOH A 118 322 167 HOH HOH . D 4 HOH A 119 323 168 HOH HOH . D 4 HOH A 120 324 169 HOH HOH . D 4 HOH A 121 325 170 HOH HOH . D 4 HOH A 122 326 171 HOH HOH . D 4 HOH A 123 327 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . C 3 33.81 10.572 55.889 1 19.92 ? N1 GSH 204 A 1 HETATM 2 C CA1 GSH . . . C 3 35.189 10.439 55.399 1 21.76 ? CA1 GSH 204 A 1 HETATM 3 C C1 GSH . . . C 3 35.845 11.787 55.327 1 19.35 ? C1 GSH 204 A 1 HETATM 4 O O11 GSH . . . C 3 35.409 12.529 54.385 1 19.23 ? O11 GSH 204 A 1 HETATM 5 O O12 GSH . . . C 3 36.886 12.297 56.102 1 17.91 ? O12 GSH 204 A 1 HETATM 6 C CB1 GSH . . . C 3 35.961 9.334 56.1 1 20.92 ? CB1 GSH 204 A 1 HETATM 7 C CG1 GSH . . . C 3 37.476 9.329 55.889 1 22.26 ? CG1 GSH 204 A 1 HETATM 8 C CD1 GSH . . . C 3 38.059 7.916 55.794 1 21.02 ? CD1 GSH 204 A 1 HETATM 9 O OE1 GSH . . . C 3 37.289 6.767 55.982 1 18.46 ? OE1 GSH 204 A 1 HETATM 10 N N2 GSH . . . C 3 39.335 7.837 55.494 1 22.18 ? N2 GSH 204 A 1 HETATM 11 C CA2 GSH . . . C 3 40.034 6.566 55.381 1 24.34 ? CA2 GSH 204 A 1 HETATM 12 C C2 GSH . . . C 3 40.559 6.135 56.709 1 24.23 ? C2 GSH 204 A 1 HETATM 13 O O2 GSH . . . C 3 41.483 6.972 57.338 1 23.49 ? O2 GSH 204 A 1 HETATM 14 C CB2 GSH . . . C 3 41.213 6.731 54.433 1 25.14 ? CB2 GSH 204 A 1 HETATM 15 S SG2 GSH . . . C 3 40.677 7.045 52.733 1 29.07 ? SG2 GSH 204 A 1 HETATM 16 N N3 GSH . . . C 3 40.151 4.983 57.231 1 27.56 ? N3 GSH 204 A 1 HETATM 17 C CA3 GSH . . . C 3 40.575 4.501 58.537 1 31.26 ? CA3 GSH 204 A 1 HETATM 18 C C3 GSH . . . C 3 41.539 3.355 58.359 1 34.96 ? C3 GSH 204 A 1 HETATM 19 O O31 GSH . . . C 3 41.893 2.972 57.159 1 39.53 ? O31 GSH 204 A 1 HETATM 20 O O32 GSH . . . C 3 42.079 2.658 59.458 1 38.45 ? O32 GSH 204 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #