data_2NU9 # _model_server_result.job_id sG9euGAcYe428gffPHH5CQ _model_server_result.datetime_utc '2024-12-02 17:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 2NU9 # _exptl.entry_id 2NU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NU9 _cell.length_a 98.53 _cell.length_b 154.9 _cell.length_c 240.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,O,P,Q,U,W 1 1 C,D,G,H,L,M,N,R,S,T,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 O N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 245 A GLY 245 1_555 A N NEP 246 A NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C NEP 246 A NEP 246 1_555 A N ALA 247 A ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C GLY 245 D GLY 245 1_555 C N NEP 246 D NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 C C NEP 246 D NEP 246 1_555 C N ALA 247 D ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C GLY 245 F GLY 245 1_555 E N NEP 246 F NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 E C NEP 246 F NEP 246 1_555 E N ALA 247 F ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 G C GLY 245 H GLY 245 1_555 G N NEP 246 H NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 G C NEP 246 H NEP 246 1_555 G N ALA 247 H ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2NU9 _atom_sites.fract_transf_matrix[1][1] 0.010149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 COA A 1 300 300 COA COA . J 4 SO4 B 1 389 5 SO4 SO4 . K 4 SO4 B 1 390 6 SO4 SO4 . L 3 COA D 1 301 301 COA COA . M 4 SO4 E 1 389 7 SO4 SO4 . N 4 SO4 E 1 390 8 SO4 SO4 . O 3 COA F 1 400 300 COA COA . P 4 SO4 G 1 389 1 SO4 SO4 . Q 4 SO4 G 1 390 2 SO4 SO4 . R 3 COA H 1 401 301 COA COA . S 4 SO4 I 1 389 3 SO4 SO4 . T 4 SO4 I 1 390 4 SO4 SO4 . U 5 HOH A 1 301 1 HOH HOH . V 5 HOH E 1 391 2 HOH HOH . W 5 HOH F 1 401 3 HOH HOH . X 5 HOH H 1 402 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . L 3 39.488 7.595 186.141 1 44.64 ? N1A COA 301 D 1 HETATM 2 C C2A COA . . . L 3 39.582 8.249 187.307 1 45.2 ? C2A COA 301 D 1 HETATM 3 N N3A COA . . . L 3 40.156 9.43 187.58 1 43.98 ? N3A COA 301 D 1 HETATM 4 C C4A COA . . . L 3 40.692 9.969 186.472 1 43.59 ? C4A COA 301 D 1 HETATM 5 C C5A COA . . . L 3 40.685 9.425 185.201 1 43.85 ? C5A COA 301 D 1 HETATM 6 C C6A COA . . . L 3 40.032 8.162 185.042 1 44.23 ? C6A COA 301 D 1 HETATM 7 N N6A COA . . . L 3 39.92 7.509 183.878 1 43.44 ? N6A COA 301 D 1 HETATM 8 N N7A COA . . . L 3 41.342 10.266 184.31 1 43.9 ? N7A COA 301 D 1 HETATM 9 C C8A COA . . . L 3 41.713 11.288 185.051 1 43.59 ? C8A COA 301 D 1 HETATM 10 N N9A COA . . . L 3 41.345 11.178 186.365 1 43.57 ? N9A COA 301 D 1 HETATM 11 C C1B COA . . . L 3 41.538 12.102 187.489 1 44.65 ? C1B COA 301 D 1 HETATM 12 C C2B COA . . . L 3 42.893 12.751 187.806 1 44.53 ? C2B COA 301 D 1 HETATM 13 O O2B COA . . . L 3 43.46 12.058 188.887 1 48.3 ? O2B COA 301 D 1 HETATM 14 C C3B COA . . . L 3 42.51 14.198 188.171 1 44.96 ? C3B COA 301 D 1 HETATM 15 O O3B COA . . . L 3 43 14.612 189.471 1 46.21 ? O3B COA 301 D 1 HETATM 16 P P3B COA . . . L 3 44.57 14.504 189.871 1 46.23 ? P3B COA 301 D 1 HETATM 17 O O7A COA . . . L 3 44.521 13.697 191.15 1 44.78 ? O7A COA 301 D 1 HETATM 18 O O8A COA . . . L 3 45.385 13.865 188.745 1 45.81 ? O8A COA 301 D 1 HETATM 19 O O9A COA . . . L 3 44.981 15.931 190.206 1 45.56 ? O9A COA 301 D 1 HETATM 20 C C4B COA . . . L 3 40.983 14.17 188.305 1 44.31 ? C4B COA 301 D 1 HETATM 21 O O4B COA . . . L 3 40.553 13.093 187.462 1 43.83 ? O4B COA 301 D 1 HETATM 22 C C5B COA . . . L 3 40.234 15.435 187.911 1 44.68 ? C5B COA 301 D 1 HETATM 23 O O5B COA . . . L 3 40.503 16.491 188.84 1 45.65 ? O5B COA 301 D 1 HETATM 24 P P1A COA . . . L 3 40.868 17.966 188.35 1 45.21 ? P1A COA 301 D 1 HETATM 25 O O1A COA . . . L 3 41.261 18.748 189.562 1 44.1 ? O1A COA 301 D 1 HETATM 26 O O2A COA . . . L 3 41.82 17.857 187.208 1 45.03 ? O2A COA 301 D 1 HETATM 27 O O3A COA . . . L 3 39.48 18.536 187.737 1 46.49 ? O3A COA 301 D 1 HETATM 28 P P2A COA . . . L 3 38.365 19.282 188.645 1 46.99 ? P2A COA 301 D 1 HETATM 29 O O4A COA . . . L 3 38.116 18.428 189.895 1 46.1 ? O4A COA 301 D 1 HETATM 30 O O5A COA . . . L 3 38.91 20.668 188.953 1 47.27 ? O5A COA 301 D 1 HETATM 31 O O6A COA . . . L 3 37.203 19.316 187.665 1 46.61 ? O6A COA 301 D 1 HETATM 32 C CBP COA . . . L 3 35.258 17.944 187.035 1 49.17 ? CBP COA 301 D 1 HETATM 33 C CCP COA . . . L 3 36.743 18.014 187.264 1 48.2 ? CCP COA 301 D 1 HETATM 34 C CDP COA . . . L 3 34.517 18.255 188.318 1 48.49 ? CDP COA 301 D 1 HETATM 35 C CEP COA . . . L 3 34.949 16.522 186.582 1 48.98 ? CEP COA 301 D 1 HETATM 36 C CAP COA . . . L 3 34.973 18.985 185.973 1 50.35 ? CAP COA 301 D 1 HETATM 37 O OAP COA . . . L 3 35.658 18.609 184.767 1 51.35 ? OAP COA 301 D 1 HETATM 38 C C9P COA . . . L 3 33.514 19.006 185.541 1 52.01 ? C9P COA 301 D 1 HETATM 39 O O9P COA . . . L 3 32.993 18.109 184.865 1 52.35 ? O9P COA 301 D 1 HETATM 40 N N8P COA . . . L 3 32.909 20.118 185.99 1 53.05 ? N8P COA 301 D 1 HETATM 41 C C7P COA . . . L 3 31.494 20.397 185.709 1 53.11 ? C7P COA 301 D 1 HETATM 42 C C6P COA . . . L 3 30.581 19.625 186.659 1 53.34 ? C6P COA 301 D 1 HETATM 43 C C5P COA . . . L 3 29.28 20.374 186.969 1 53.29 ? C5P COA 301 D 1 HETATM 44 O O5P COA . . . L 3 29.365 21.531 187.379 1 54.45 ? O5P COA 301 D 1 HETATM 45 N N4P COA . . . L 3 28.083 19.782 186.808 1 52.17 ? N4P COA 301 D 1 HETATM 46 C C3P COA . . . L 3 26.874 20.509 187.1 1 51.76 ? C3P COA 301 D 1 HETATM 47 C C2P COA . . . L 3 26.224 19.817 188.281 1 51.69 ? C2P COA 301 D 1 HETATM 48 S S1P COA . . . L 3 24.561 20.514 188.427 1 51.48 ? S1P COA 301 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #