data_2NU9 # _model_server_result.job_id '_nhuBkaFh1bbdNjJZsL7dw' _model_server_result.datetime_utc '2024-12-03 13:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":400}' # _entry.id 2NU9 # _exptl.entry_id 2NU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NU9 _cell.length_a 98.53 _cell.length_b 154.9 _cell.length_c 240.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,O,P,Q,U,W 1 1 C,D,G,H,L,M,N,R,S,T,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 O N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 245 A GLY 245 1_555 A N NEP 246 A NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C NEP 246 A NEP 246 1_555 A N ALA 247 A ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C GLY 245 D GLY 245 1_555 C N NEP 246 D NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 C C NEP 246 D NEP 246 1_555 C N ALA 247 D ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C GLY 245 F GLY 245 1_555 E N NEP 246 F NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 E C NEP 246 F NEP 246 1_555 E N ALA 247 F ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 G C GLY 245 H GLY 245 1_555 G N NEP 246 H NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 G C NEP 246 H NEP 246 1_555 G N ALA 247 H ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2NU9 _atom_sites.fract_transf_matrix[1][1] 0.010149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 COA A 1 300 300 COA COA . J 4 SO4 B 1 389 5 SO4 SO4 . K 4 SO4 B 1 390 6 SO4 SO4 . L 3 COA D 1 301 301 COA COA . M 4 SO4 E 1 389 7 SO4 SO4 . N 4 SO4 E 1 390 8 SO4 SO4 . O 3 COA F 1 400 300 COA COA . P 4 SO4 G 1 389 1 SO4 SO4 . Q 4 SO4 G 1 390 2 SO4 SO4 . R 3 COA H 1 401 301 COA COA . S 4 SO4 I 1 389 3 SO4 SO4 . T 4 SO4 I 1 390 4 SO4 SO4 . U 5 HOH A 1 301 1 HOH HOH . V 5 HOH E 1 391 2 HOH HOH . W 5 HOH F 1 401 3 HOH HOH . X 5 HOH H 1 402 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . O 3 79.802 11.247 154.313 1 45.99 ? N1A COA 400 F 1 HETATM 2 C C2A COA . . . O 3 80.856 10.512 154.705 1 45.34 ? C2A COA 400 F 1 HETATM 3 N N3A COA . . . O 3 80.886 9.274 155.187 1 45.06 ? N3A COA 400 F 1 HETATM 4 C C4A COA . . . O 3 79.639 8.765 155.27 1 46.3 ? C4A COA 400 F 1 HETATM 5 C C5A COA . . . O 3 78.455 9.39 154.912 1 46.01 ? C5A COA 400 F 1 HETATM 6 C C6A COA . . . O 3 78.563 10.705 154.392 1 45.54 ? C6A COA 400 F 1 HETATM 7 N N6A COA . . . O 3 77.523 11.429 153.966 1 44.97 ? N6A COA 400 F 1 HETATM 8 N N7A COA . . . O 3 77.369 8.55 155.142 1 44.45 ? N7A COA 400 F 1 HETATM 9 C C8A COA . . . O 3 77.915 7.452 155.619 1 45.13 ? C8A COA 400 F 1 HETATM 10 N N9A COA . . . O 3 79.285 7.515 155.719 1 45.96 ? N9A COA 400 F 1 HETATM 11 C C1B COA . . . O 3 80.279 6.543 156.173 1 47.19 ? C1B COA 400 F 1 HETATM 12 C C2B COA . . . O 3 80.199 5.875 157.544 1 47.27 ? C2B COA 400 F 1 HETATM 13 O O2B COA . . . O 3 80.855 6.715 158.463 1 50.63 ? O2B COA 400 F 1 HETATM 14 C C3B COA . . . O 3 80.845 4.492 157.28 1 47.45 ? C3B COA 400 F 1 HETATM 15 O O3B COA . . . O 3 82.066 4.315 158.032 1 47.35 ? O3B COA 400 F 1 HETATM 16 P P3B COA . . . O 3 82.033 4.116 159.636 1 46.14 ? P3B COA 400 F 1 HETATM 17 O O7A COA . . . O 3 83.239 4.837 160.211 1 44.08 ? O7A COA 400 F 1 HETATM 18 O O8A COA . . . O 3 80.697 4.625 160.186 1 47.61 ? O8A COA 400 F 1 HETATM 19 O O9A COA . . . O 3 82.181 2.606 159.646 1 46.28 ? O9A COA 400 F 1 HETATM 20 C C4B COA . . . O 3 81.25 4.499 155.801 1 45.85 ? C4B COA 400 F 1 HETATM 21 O O4B COA . . . O 3 80.504 5.568 155.197 1 47.16 ? O4B COA 400 F 1 HETATM 22 C C5B COA . . . O 3 80.957 3.227 155.028 1 45.35 ? C5B COA 400 F 1 HETATM 23 O O5B COA . . . O 3 81.736 2.137 155.525 1 47.33 ? O5B COA 400 F 1 HETATM 24 P P1A COA . . . O 3 81.167 0.64 155.534 1 47.16 ? P1A COA 400 F 1 HETATM 25 O O1A COA . . . O 3 82.272 -0.244 156.017 1 45.18 ? O1A COA 400 F 1 HETATM 26 O O2A COA . . . O 3 79.852 0.646 156.253 1 46.15 ? O2A COA 400 F 1 HETATM 27 O O3A COA . . . O 3 80.84 0.296 153.984 1 45.49 ? O3A COA 400 F 1 HETATM 28 P P2A COA . . . O 3 81.911 -0.423 153.004 1 43.89 ? P2A COA 400 F 1 HETATM 29 O O4A COA . . . O 3 83.178 0.441 153.05 1 44.01 ? O4A COA 400 F 1 HETATM 30 O O5A COA . . . O 3 82.135 -1.875 153.417 1 43.49 ? O5A COA 400 F 1 HETATM 31 O O6A COA . . . O 3 81.13 -0.327 151.701 1 43.12 ? O6A COA 400 F 1 HETATM 32 C CBP COA . . . O 3 80.905 0.971 149.566 1 41.54 ? CBP COA 400 F 1 HETATM 33 C CCP COA . . . O 3 80.804 0.944 151.116 1 41.48 ? CCP COA 400 F 1 HETATM 34 C CDP COA . . . O 3 82.299 0.565 148.971 1 39.1 ? CDP COA 400 F 1 HETATM 35 C CEP COA . . . O 3 80.62 2.453 149.169 1 41.71 ? CEP COA 400 F 1 HETATM 36 C CAP COA . . . O 3 79.753 0.059 149.077 1 41.13 ? CAP COA 400 F 1 HETATM 37 O OAP COA . . . O 3 78.485 0.753 149.189 1 41.63 ? OAP COA 400 F 1 HETATM 38 C C9P COA . . . O 3 79.802 -0.153 147.576 1 41.35 ? C9P COA 400 F 1 HETATM 39 O O9P COA . . . O 3 79.081 0.568 146.884 1 41.03 ? O9P COA 400 F 1 HETATM 40 N N8P COA . . . O 3 80.619 -1.084 147.052 1 41.87 ? N8P COA 400 F 1 HETATM 41 C C7P COA . . . O 3 80.649 -1.277 145.603 1 41.4 ? C7P COA 400 F 1 HETATM 42 C C6P COA . . . O 3 82.082 -1.344 145.103 1 42.62 ? C6P COA 400 F 1 HETATM 43 C C5P COA . . . O 3 82.084 -1.422 143.57 1 45.02 ? C5P COA 400 F 1 HETATM 44 O O5P COA . . . O 3 81.605 -2.451 143.078 1 47.06 ? O5P COA 400 F 1 HETATM 45 N N4P COA . . . O 3 82.557 -0.423 142.795 1 44.61 ? N4P COA 400 F 1 HETATM 46 C C3P COA . . . O 3 82.548 -0.509 141.347 1 44.37 ? C3P COA 400 F 1 HETATM 47 C C2P COA . . . O 3 84.016 -0.644 140.985 1 45.53 ? C2P COA 400 F 1 HETATM 48 S S1P COA . . . O 3 84.379 -1.398 139.377 1 46.4 ? S1P COA 400 F 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #