data_2NU9 # _model_server_result.job_id 9h1SLahlaTCxY44F26xDQg _model_server_result.datetime_utc '2024-12-02 17:31:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":401}' # _entry.id 2NU9 # _exptl.entry_id 2NU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NU9 _cell.length_a 98.53 _cell.length_b 154.9 _cell.length_c 240.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,O,P,Q,U,W 1 1 C,D,G,H,L,M,N,R,S,T,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 O N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 245 A GLY 245 1_555 A N NEP 246 A NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C NEP 246 A NEP 246 1_555 A N ALA 247 A ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C GLY 245 D GLY 245 1_555 C N NEP 246 D NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 C C NEP 246 D NEP 246 1_555 C N ALA 247 D ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C GLY 245 F GLY 245 1_555 E N NEP 246 F NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 E C NEP 246 F NEP 246 1_555 E N ALA 247 F ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 G C GLY 245 H GLY 245 1_555 G N NEP 246 H NEP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 G C NEP 246 H NEP 246 1_555 G N ALA 247 H ALA 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2NU9 _atom_sites.fract_transf_matrix[1][1] 0.010149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 COA A 1 300 300 COA COA . J 4 SO4 B 1 389 5 SO4 SO4 . K 4 SO4 B 1 390 6 SO4 SO4 . L 3 COA D 1 301 301 COA COA . M 4 SO4 E 1 389 7 SO4 SO4 . N 4 SO4 E 1 390 8 SO4 SO4 . O 3 COA F 1 400 300 COA COA . P 4 SO4 G 1 389 1 SO4 SO4 . Q 4 SO4 G 1 390 2 SO4 SO4 . R 3 COA H 1 401 301 COA COA . S 4 SO4 I 1 389 3 SO4 SO4 . T 4 SO4 I 1 390 4 SO4 SO4 . U 5 HOH A 1 301 1 HOH HOH . V 5 HOH E 1 391 2 HOH HOH . W 5 HOH F 1 401 3 HOH HOH . X 5 HOH H 1 402 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . R 3 22.292 -9.243 149.338 1 45.3 ? N1A COA 401 H 1 HETATM 2 C C2A COA . . . R 3 21.792 -10.119 148.447 1 45.08 ? C2A COA 401 H 1 HETATM 3 N N3A COA . . . R 3 22.36 -10.635 147.354 1 44.02 ? N3A COA 401 H 1 HETATM 4 C C4A COA . . . R 3 23.607 -10.149 147.193 1 44.48 ? C4A COA 401 H 1 HETATM 5 C C5A COA . . . R 3 24.264 -9.238 148.013 1 44.4 ? C5A COA 401 H 1 HETATM 6 C C6A COA . . . R 3 23.548 -8.777 149.158 1 44.32 ? C6A COA 401 H 1 HETATM 7 N N6A COA . . . R 3 24.039 -7.924 150.065 1 43.66 ? N6A COA 401 H 1 HETATM 8 N N7A COA . . . R 3 25.538 -8.967 147.519 1 43.44 ? N7A COA 401 H 1 HETATM 9 C C8A COA . . . R 3 25.627 -9.72 146.438 1 43.94 ? C8A COA 401 H 1 HETATM 10 N N9A COA . . . R 3 24.502 -10.478 146.198 1 43.8 ? N9A COA 401 H 1 HETATM 11 C C1B COA . . . R 3 24.204 -11.491 145.179 1 43.21 ? C1B COA 401 H 1 HETATM 12 C C2B COA . . . R 3 24.081 -11.177 143.687 1 41.98 ? C2B COA 401 H 1 HETATM 13 O O2B COA . . . R 3 22.719 -11.341 143.364 1 47.55 ? O2B COA 401 H 1 HETATM 14 C C3B COA . . . R 3 24.93 -12.281 143.038 1 40.23 ? C3B COA 401 H 1 HETATM 15 O O3B COA . . . R 3 24.23 -12.86 141.923 1 37.48 ? O3B COA 401 H 1 HETATM 16 P P3B COA . . . R 3 23.818 -11.961 140.644 1 33.45 ? P3B COA 401 H 1 HETATM 17 O O7A COA . . . R 3 22.307 -11.998 140.506 1 33.31 ? O7A COA 401 H 1 HETATM 18 O O8A COA . . . R 3 24.369 -10.573 140.936 1 36.09 ? O8A COA 401 H 1 HETATM 19 O O9A COA . . . R 3 24.511 -12.708 139.513 1 33 ? O9A COA 401 H 1 HETATM 20 C C4B COA . . . R 3 25.019 -13.355 144.122 1 40 ? C4B COA 401 H 1 HETATM 21 O O4B COA . . . R 3 25.029 -12.611 145.349 1 41.91 ? O4B COA 401 H 1 HETATM 22 C C5B COA . . . R 3 26.229 -14.253 144.102 1 38.53 ? C5B COA 401 H 1 HETATM 23 O O5B COA . . . R 3 26.192 -15.089 142.963 1 38.82 ? O5B COA 401 H 1 HETATM 24 P P1A COA . . . R 3 27.536 -15.578 142.271 1 39.71 ? P1A COA 401 H 1 HETATM 25 O O1A COA . . . R 3 27.178 -16.536 141.187 1 38.26 ? O1A COA 401 H 1 HETATM 26 O O2A COA . . . R 3 28.342 -14.365 141.943 1 38.94 ? O2A COA 401 H 1 HETATM 27 O O3A COA . . . R 3 28.3 -16.39 143.441 1 41.84 ? O3A COA 401 H 1 HETATM 28 P P2A COA . . . R 3 28.193 -17.997 143.579 1 43.11 ? P2A COA 401 H 1 HETATM 29 O O4A COA . . . R 3 26.694 -18.283 143.595 1 44.15 ? O4A COA 401 H 1 HETATM 30 O O5A COA . . . R 3 28.937 -18.64 142.413 1 43.25 ? O5A COA 401 H 1 HETATM 31 O O6A COA . . . R 3 28.885 -18.244 144.91 1 43.94 ? O6A COA 401 H 1 HETATM 32 C CBP COA . . . R 3 28.731 -18.452 147.31 1 46.14 ? CBP COA 401 H 1 HETATM 33 C CCP COA . . . R 3 28.464 -17.569 146.089 1 45.02 ? CCP COA 401 H 1 HETATM 34 C CDP COA . . . R 3 28.087 -19.799 147.001 1 44.41 ? CDP COA 401 H 1 HETATM 35 C CEP COA . . . R 3 27.948 -17.832 148.482 1 45.49 ? CEP COA 401 H 1 HETATM 36 C CAP COA . . . R 3 30.291 -18.628 147.593 1 47.56 ? CAP COA 401 H 1 HETATM 37 O OAP COA . . . R 3 30.879 -17.416 148.102 1 47.64 ? OAP COA 401 H 1 HETATM 38 C C9P COA . . . R 3 30.553 -19.628 148.737 1 49.95 ? C9P COA 401 H 1 HETATM 39 O O9P COA . . . R 3 30.445 -19.327 149.933 1 50.29 ? O9P COA 401 H 1 HETATM 40 N N8P COA . . . R 3 30.896 -20.861 148.326 1 52 ? N8P COA 401 H 1 HETATM 41 C C7P COA . . . R 3 31.188 -21.938 149.287 1 53.73 ? C7P COA 401 H 1 HETATM 42 C C6P COA . . . R 3 29.932 -22.533 149.934 1 56.26 ? C6P COA 401 H 1 HETATM 43 C C5P COA . . . R 3 30.144 -23.866 150.699 1 57.88 ? C5P COA 401 H 1 HETATM 44 O O5P COA . . . R 3 30.691 -24.789 150.097 1 59.07 ? O5P COA 401 H 1 HETATM 45 N N4P COA . . . R 3 29.782 -24.163 151.96 1 58.82 ? N4P COA 401 H 1 HETATM 46 C C3P COA . . . R 3 30.132 -25.487 152.383 1 58.97 ? C3P COA 401 H 1 HETATM 47 C C2P COA . . . R 3 29.559 -25.614 153.765 1 59.48 ? C2P COA 401 H 1 HETATM 48 S S1P COA . . . R 3 29.222 -27.371 153.644 1 59.4 ? S1P COA 401 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #