data_2NV6 # _model_server_result.job_id 2zXt4a3-noSjFe1hZpgBlg _model_server_result.datetime_utc '2024-11-29 21:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2NV6 # _exptl.entry_id 2NV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 768.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NV6 _cell.length_a 98.278 _cell.length_b 98.278 _cell.length_c 139.243 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -49.139 85.111245 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.414333 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -49.139 85.111245 46.414333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H30 N8 O15 P2' _chem_comp.formula_weight 768.519 _chem_comp.id ZID _chem_comp.mon_nstd_flag . _chem_comp.name 'ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A ZID doub 376 n n PA O2A ZID sing 377 n n PA O5B ZID sing 378 n n PA O3 ZID sing 379 n n O2A HOA2 ZID sing 380 n n O5B C5B ZID sing 381 n n C5B C4B ZID sing 382 n n C5B H51A ZID sing 383 n n C5B H52A ZID sing 384 n n C4B O4B ZID sing 385 n n C4B C3B ZID sing 386 n n C4B H4B ZID sing 387 n n O4B C1B ZID sing 388 n n C3B O3B ZID sing 389 n n C3B C2B ZID sing 390 n n C3B H3B ZID sing 391 n n O3B HO3A ZID sing 392 n n C2B O2B ZID sing 393 n n C2B C1B ZID sing 394 n n C2B H2B ZID sing 395 n n O2B HO2A ZID sing 396 n n C1B N9A ZID sing 397 n n C1B H1B ZID sing 398 n n N9A C8A ZID sing 399 n y N9A C4A ZID sing 400 n y C8A N7A ZID doub 401 n y C8A H8A ZID sing 402 n n N7A C5A ZID sing 403 n y C5A C6A ZID sing 404 n y C5A C4A ZID doub 405 n y C6A N6A ZID sing 406 n n C6A N1A ZID doub 407 n y N6A H61A ZID sing 408 n n N6A H62A ZID sing 409 n n N1A C2A ZID sing 410 n y C2A N3A ZID doub 411 n y C2A H2A ZID sing 412 n n N3A C4A ZID sing 413 n y O3 PN ZID sing 414 n n PN O1N ZID doub 415 n n PN O2N ZID sing 416 n n PN O5D ZID sing 417 n n O5D C5D ZID sing 418 n n C5D C4D ZID sing 419 n n C5D H51N ZID sing 420 n n C5D H52N ZID sing 421 n n C4D O4D ZID sing 422 n n C4D C3D ZID sing 423 n n C4D H4D ZID sing 424 n n O4D C1D ZID sing 425 n n C3D O3D ZID sing 426 n n C3D C2D ZID sing 427 n n C3D H3D ZID sing 428 n n O3D HO3N ZID sing 429 n n C2D O2D ZID sing 430 n n C2D C1D ZID sing 431 n n C2D H2D ZID sing 432 n n O2D HO2N ZID sing 433 n n C1D N1N ZID sing 434 n n C1D H1D ZID sing 435 n n N1N C2N ZID sing 436 n y N1N C6N ZID doub 437 n y C2N C3N ZID doub 438 n y C2N H2N ZID sing 439 n n C3N C7N ZID sing 440 n n C3N C4N ZID sing 441 n y C7N O7N ZID doub 442 n n C7N N7N ZID sing 443 n n N7N H71N ZID sing 444 n n N7N H72N ZID sing 445 n n C4N C5N ZID doub 446 n y C4N C7Z ZID sing 447 n n C5N C6N ZID sing 448 n y C5N H5N ZID sing 449 n n C6N H6N ZID sing 450 n n C7Z O7Z ZID doub 451 n n C7Z C4Z ZID sing 452 n n N1Z C2Z ZID doub 453 n y N1Z C6Z ZID sing 454 n y C2Z C3Z ZID sing 455 n y C2Z H2Z ZID sing 456 n n C3Z C4Z ZID doub 457 n y C3Z H3Z ZID sing 458 n n C4Z C5Z ZID sing 459 n y C5Z C6Z ZID doub 460 n y C5Z H5Z ZID sing 461 n n C6Z H6Z ZID sing 462 n n # _atom_sites.entry_id 2NV6 _atom_sites.fract_transf_matrix[1][1] 0.010175 _atom_sites.fract_transf_matrix[1][2] 0.005875 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZID A 1 300 300 ZID ZID . C 3 HOH A 1 301 1 HOH TIP . C 3 HOH A 2 302 2 HOH TIP . C 3 HOH A 3 303 3 HOH TIP . C 3 HOH A 4 304 4 HOH TIP . C 3 HOH A 5 305 5 HOH TIP . C 3 HOH A 6 306 6 HOH TIP . C 3 HOH A 7 307 7 HOH TIP . C 3 HOH A 8 308 8 HOH TIP . C 3 HOH A 9 309 9 HOH TIP . C 3 HOH A 10 310 10 HOH TIP . C 3 HOH A 11 311 11 HOH TIP . C 3 HOH A 12 312 12 HOH TIP . C 3 HOH A 13 313 13 HOH TIP . C 3 HOH A 14 314 14 HOH TIP . C 3 HOH A 15 315 15 HOH TIP . C 3 HOH A 16 316 16 HOH TIP . C 3 HOH A 17 317 17 HOH TIP . C 3 HOH A 18 318 18 HOH TIP . C 3 HOH A 19 319 19 HOH TIP . C 3 HOH A 20 320 20 HOH TIP . C 3 HOH A 21 321 21 HOH TIP . C 3 HOH A 22 322 22 HOH TIP . C 3 HOH A 23 323 23 HOH TIP . C 3 HOH A 24 324 24 HOH TIP . C 3 HOH A 25 325 25 HOH TIP . C 3 HOH A 26 326 26 HOH TIP . C 3 HOH A 27 327 27 HOH TIP . C 3 HOH A 28 328 28 HOH TIP . C 3 HOH A 29 329 29 HOH TIP . C 3 HOH A 30 330 30 HOH TIP . C 3 HOH A 31 331 31 HOH TIP . C 3 HOH A 32 332 32 HOH TIP . C 3 HOH A 33 333 33 HOH TIP . C 3 HOH A 34 334 34 HOH TIP . C 3 HOH A 35 335 35 HOH TIP . C 3 HOH A 36 336 36 HOH TIP . C 3 HOH A 37 337 37 HOH TIP . C 3 HOH A 38 338 38 HOH TIP . C 3 HOH A 39 339 39 HOH TIP . C 3 HOH A 40 340 40 HOH TIP . C 3 HOH A 41 341 41 HOH TIP . C 3 HOH A 42 342 42 HOH TIP . C 3 HOH A 43 343 43 HOH TIP . C 3 HOH A 44 344 44 HOH TIP . C 3 HOH A 45 345 45 HOH TIP . C 3 HOH A 46 346 46 HOH TIP . C 3 HOH A 47 347 47 HOH TIP . C 3 HOH A 48 348 48 HOH TIP . C 3 HOH A 49 349 49 HOH TIP . C 3 HOH A 50 350 50 HOH TIP . C 3 HOH A 51 351 51 HOH TIP . C 3 HOH A 52 352 52 HOH TIP . C 3 HOH A 53 353 53 HOH TIP . C 3 HOH A 54 354 54 HOH TIP . C 3 HOH A 55 355 55 HOH TIP . C 3 HOH A 56 356 56 HOH TIP . C 3 HOH A 57 357 57 HOH TIP . C 3 HOH A 58 358 58 HOH TIP . C 3 HOH A 59 359 59 HOH TIP . C 3 HOH A 60 360 60 HOH TIP . C 3 HOH A 61 361 61 HOH TIP . C 3 HOH A 62 362 62 HOH TIP . C 3 HOH A 63 363 63 HOH TIP . C 3 HOH A 64 364 64 HOH TIP . C 3 HOH A 65 365 65 HOH TIP . C 3 HOH A 66 366 66 HOH TIP . C 3 HOH A 67 367 67 HOH TIP . C 3 HOH A 68 368 68 HOH TIP . C 3 HOH A 69 369 69 HOH TIP . C 3 HOH A 70 370 70 HOH TIP . C 3 HOH A 71 371 71 HOH TIP . C 3 HOH A 72 372 72 HOH TIP . C 3 HOH A 73 373 73 HOH TIP . C 3 HOH A 74 374 74 HOH TIP . C 3 HOH A 75 375 75 HOH TIP . C 3 HOH A 76 376 76 HOH TIP . C 3 HOH A 77 377 77 HOH TIP . C 3 HOH A 78 378 78 HOH TIP . C 3 HOH A 79 379 79 HOH TIP . C 3 HOH A 80 380 80 HOH TIP . C 3 HOH A 81 381 81 HOH TIP . C 3 HOH A 82 382 82 HOH TIP . C 3 HOH A 83 383 83 HOH TIP . C 3 HOH A 84 384 84 HOH TIP . C 3 HOH A 85 385 85 HOH TIP . C 3 HOH A 86 386 86 HOH TIP . C 3 HOH A 87 387 87 HOH TIP . C 3 HOH A 88 388 88 HOH TIP . C 3 HOH A 89 389 89 HOH TIP . C 3 HOH A 90 390 90 HOH TIP . C 3 HOH A 91 391 91 HOH TIP . C 3 HOH A 92 392 92 HOH TIP . C 3 HOH A 93 393 93 HOH TIP . C 3 HOH A 94 394 94 HOH TIP . C 3 HOH A 95 395 95 HOH TIP . C 3 HOH A 96 396 96 HOH TIP . C 3 HOH A 97 397 97 HOH TIP . C 3 HOH A 98 398 98 HOH TIP . C 3 HOH A 99 399 99 HOH TIP . C 3 HOH A 100 400 100 HOH TIP . C 3 HOH A 101 401 101 HOH TIP . C 3 HOH A 102 402 102 HOH TIP . C 3 HOH A 103 403 103 HOH TIP . C 3 HOH A 104 404 104 HOH TIP . C 3 HOH A 105 405 105 HOH TIP . C 3 HOH A 106 406 106 HOH TIP . C 3 HOH A 107 407 107 HOH TIP . C 3 HOH A 108 408 108 HOH TIP . C 3 HOH A 109 409 109 HOH TIP . C 3 HOH A 110 410 110 HOH TIP . C 3 HOH A 111 411 111 HOH TIP . C 3 HOH A 112 412 112 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA ZID . . . B 2 -0.631 33.594 11.157 0.99 33.26 ? PA ZID 300 A 1 HETATM 2 O O1A ZID . . . B 2 -0.771 32.31 10.391 0.99 31.36 ? O1A ZID 300 A 1 HETATM 3 O O2A ZID . . . B 2 0.366 34.653 10.679 0.99 34.17 ? O2A ZID 300 A 1 HETATM 4 O O5B ZID . . . B 2 -0.168 33.419 12.637 0.99 36.12 ? O5B ZID 300 A 1 HETATM 5 C C5B ZID . . . B 2 -0.683 33.001 13.891 0.99 35.8 ? C5B ZID 300 A 1 HETATM 6 C C4B ZID . . . B 2 0.115 31.924 14.607 0.99 35.25 ? C4B ZID 300 A 1 HETATM 7 O O4B ZID . . . B 2 -0.599 30.737 14.917 0.99 38.37 ? O4B ZID 300 A 1 HETATM 8 C C3B ZID . . . B 2 1.264 31.384 13.718 0.99 34.02 ? C3B ZID 300 A 1 HETATM 9 O O3B ZID . . . B 2 2.418 32.11 14.006 0.99 32.16 ? O3B ZID 300 A 1 HETATM 10 C C2B ZID . . . B 2 1.376 30.002 14.195 0.99 34.15 ? C2B ZID 300 A 1 HETATM 11 O O2B ZID . . . B 2 2.688 29.414 14.285 0.99 34.53 ? O2B ZID 300 A 1 HETATM 12 C C1B ZID . . . B 2 0.427 30.082 15.518 0.99 35.24 ? C1B ZID 300 A 1 HETATM 13 N N9A ZID . . . B 2 0.444 28.6 15.878 0.99 35.34 ? N9A ZID 300 A 1 HETATM 14 C C8A ZID . . . B 2 -0.333 27.522 15.623 0.99 33.98 ? C8A ZID 300 A 1 HETATM 15 N N7A ZID . . . B 2 -0.277 26.564 16.498 0.99 34.54 ? N7A ZID 300 A 1 HETATM 16 C C5A ZID . . . B 2 0.508 27.022 17.415 0.99 34.03 ? C5A ZID 300 A 1 HETATM 17 C C6A ZID . . . B 2 0.919 26.334 18.628 0.99 35.19 ? C6A ZID 300 A 1 HETATM 18 N N6A ZID . . . B 2 0.523 25.201 18.811 0.99 35.57 ? N6A ZID 300 A 1 HETATM 19 N N1A ZID . . . B 2 1.737 27.016 19.486 0.99 35.75 ? N1A ZID 300 A 1 HETATM 20 C C2A ZID . . . B 2 2.162 28.305 19.218 0.99 35.13 ? C2A ZID 300 A 1 HETATM 21 N N3A ZID . . . B 2 1.813 28.959 18.071 0.99 36.03 ? N3A ZID 300 A 1 HETATM 22 C C4A ZID . . . B 2 0.959 28.325 17.109 0.99 34.23 ? C4A ZID 300 A 1 HETATM 23 O O3 ZID . . . B 2 -2.072 34.282 11.055 0.99 33.34 ? O3 ZID 300 A 1 HETATM 24 P PN ZID . . . B 2 -2.703 35.679 11.594 0.99 30.13 ? PN ZID 300 A 1 HETATM 25 O O1N ZID . . . B 2 -3.827 36.036 10.666 0.99 32.91 ? O1N ZID 300 A 1 HETATM 26 O O2N ZID . . . B 2 -1.57 36.677 11.789 0.99 29.64 ? O2N ZID 300 A 1 HETATM 27 O O5D ZID . . . B 2 -3.212 35.24 13.044 0.99 30.42 ? O5D ZID 300 A 1 HETATM 28 C C5D ZID . . . B 2 -2.747 35.792 14.271 0.99 29.72 ? C5D ZID 300 A 1 HETATM 29 C C4D ZID . . . B 2 -3.992 35.992 15.216 0.99 30.37 ? C4D ZID 300 A 1 HETATM 30 O O4D ZID . . . B 2 -4.843 37.052 14.601 0.99 27.86 ? O4D ZID 300 A 1 HETATM 31 C C3D ZID . . . B 2 -4.968 34.768 15.435 0.99 28.24 ? C3D ZID 300 A 1 HETATM 32 O O3D ZID . . . B 2 -5.554 34.668 16.73 0.99 28.67 ? O3D ZID 300 A 1 HETATM 33 C C2D ZID . . . B 2 -6.023 35.041 14.41 0.99 27.51 ? C2D ZID 300 A 1 HETATM 34 O O2D ZID . . . B 2 -7.214 34.298 14.486 0.99 24.27 ? O2D ZID 300 A 1 HETATM 35 C C1D ZID . . . B 2 -6.199 36.548 14.597 0.99 27.79 ? C1D ZID 300 A 1 HETATM 36 N N1N ZID . . . B 2 -7.003 37.194 13.528 0.99 27.8 ? N1N ZID 300 A 1 HETATM 37 C C2N ZID . . . B 2 -6.684 37.061 12.173 0.99 28.05 ? C2N ZID 300 A 1 HETATM 38 C C3N ZID . . . B 2 -7.494 37.602 11.192 0.99 29.79 ? C3N ZID 300 A 1 HETATM 39 C C7N ZID . . . B 2 -7.097 37.527 9.709 0.99 29.9 ? C7N ZID 300 A 1 HETATM 40 O O7N ZID . . . B 2 -5.926 37.139 9.333 0.99 29.51 ? O7N ZID 300 A 1 HETATM 41 N N7N ZID . . . B 2 -8.076 37.956 8.89 0.99 28.28 ? N7N ZID 300 A 1 HETATM 42 C C4N ZID . . . B 2 -8.756 38.263 11.572 0.99 28.95 ? C4N ZID 300 A 1 HETATM 43 C C5N ZID . . . B 2 -8.981 38.509 12.975 0.99 28.34 ? C5N ZID 300 A 1 HETATM 44 C C6N ZID . . . B 2 -8.131 37.94 13.958 0.99 28.38 ? C6N ZID 300 A 1 HETATM 45 C C7Z ZID . . . B 2 -9.905 37.266 11.131 0.99 27.25 ? C7Z ZID 300 A 1 HETATM 46 O O7Z ZID . . . B 2 -9.624 36.035 11.009 0.99 27.41 ? O7Z ZID 300 A 1 HETATM 47 N N1Z ZID . . . B 2 -13.95 38.286 10.376 0.99 24.87 ? N1Z ZID 300 A 1 HETATM 48 C C2Z ZID . . . B 2 -13.591 36.994 10.245 0.99 26.71 ? C2Z ZID 300 A 1 HETATM 49 C C3Z ZID . . . B 2 -12.243 36.617 10.485 0.99 26.51 ? C3Z ZID 300 A 1 HETATM 50 C C4Z ZID . . . B 2 -11.337 37.657 10.858 0.99 27.09 ? C4Z ZID 300 A 1 HETATM 51 C C5Z ZID . . . B 2 -11.785 38.995 10.981 0.99 25.3 ? C5Z ZID 300 A 1 HETATM 52 C C6Z ZID . . . B 2 -13.117 39.291 10.731 0.99 25.82 ? C6Z ZID 300 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #