data_2NWF # _model_server_result.job_id 8mO4IESVu72t8Dopos653Q _model_server_result.datetime_utc '2025-01-02 19:15:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":342}' # _entry.id 2NWF # _exptl.entry_id 2NWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NWF _cell.length_a 70.637 _cell.length_b 70.637 _cell.length_c 54.602 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 88 A CYS 134 1_555 A SG CYS 105 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A SG CYS 83 A CYS 129 1_555 B FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A ND1 HIS 85 A HIS 131 1_555 B FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A SG CYS 103 A CYS 149 1_555 B FE1 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A ND1 HIS 106 A HIS 152 1_555 B FE2 FES . A FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 2NWF _atom_sites.fract_transf_matrix[1][1] 0.014157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 200 200 FES FES . C 3 GOL A 1 340 340 GOL GOL . D 3 GOL A 1 341 341 GOL GOL . E 3 GOL A 1 342 342 GOL GOL . F 4 HOH A 1 343 1 HOH HOH . F 4 HOH A 2 344 2 HOH HOH . F 4 HOH A 3 345 3 HOH HOH . F 4 HOH A 4 346 4 HOH HOH . F 4 HOH A 5 347 5 HOH HOH . F 4 HOH A 6 348 6 HOH HOH . F 4 HOH A 7 349 7 HOH HOH . F 4 HOH A 8 350 8 HOH HOH . F 4 HOH A 9 351 9 HOH HOH . F 4 HOH A 10 352 10 HOH HOH . F 4 HOH A 11 353 11 HOH HOH . F 4 HOH A 12 354 12 HOH HOH . F 4 HOH A 13 355 13 HOH HOH . F 4 HOH A 14 356 14 HOH HOH . F 4 HOH A 15 357 15 HOH HOH . F 4 HOH A 16 358 16 HOH HOH . F 4 HOH A 17 359 17 HOH HOH . F 4 HOH A 18 360 18 HOH HOH . F 4 HOH A 19 361 19 HOH HOH . F 4 HOH A 20 362 20 HOH HOH . F 4 HOH A 21 363 21 HOH HOH . F 4 HOH A 22 364 22 HOH HOH . F 4 HOH A 23 365 23 HOH HOH . F 4 HOH A 24 366 24 HOH HOH . F 4 HOH A 25 367 25 HOH HOH . F 4 HOH A 26 368 26 HOH HOH . F 4 HOH A 27 369 27 HOH HOH . F 4 HOH A 28 370 28 HOH HOH . F 4 HOH A 29 371 29 HOH HOH . F 4 HOH A 30 372 30 HOH HOH . F 4 HOH A 31 373 31 HOH HOH . F 4 HOH A 32 374 32 HOH HOH . F 4 HOH A 33 375 33 HOH HOH . F 4 HOH A 34 376 34 HOH HOH . F 4 HOH A 35 377 35 HOH HOH . F 4 HOH A 36 378 36 HOH HOH . F 4 HOH A 37 379 37 HOH HOH . F 4 HOH A 38 380 38 HOH HOH . F 4 HOH A 39 381 39 HOH HOH . F 4 HOH A 40 382 40 HOH HOH . F 4 HOH A 41 383 41 HOH HOH . F 4 HOH A 42 384 42 HOH HOH . F 4 HOH A 43 385 43 HOH HOH . F 4 HOH A 44 386 44 HOH HOH . F 4 HOH A 45 387 45 HOH HOH . F 4 HOH A 46 388 46 HOH HOH . F 4 HOH A 47 389 47 HOH HOH . F 4 HOH A 48 390 48 HOH HOH . F 4 HOH A 49 391 49 HOH HOH . F 4 HOH A 50 392 50 HOH HOH . F 4 HOH A 51 393 51 HOH HOH . F 4 HOH A 52 394 52 HOH HOH . F 4 HOH A 53 395 53 HOH HOH . F 4 HOH A 54 396 54 HOH HOH . F 4 HOH A 55 397 55 HOH HOH . F 4 HOH A 56 398 56 HOH HOH . F 4 HOH A 57 399 57 HOH HOH . F 4 HOH A 58 400 58 HOH HOH . F 4 HOH A 59 401 59 HOH HOH . F 4 HOH A 60 402 60 HOH HOH . F 4 HOH A 61 403 61 HOH HOH . F 4 HOH A 62 404 62 HOH HOH . F 4 HOH A 63 405 63 HOH HOH . F 4 HOH A 64 406 64 HOH HOH . F 4 HOH A 65 407 65 HOH HOH . F 4 HOH A 66 408 66 HOH HOH . F 4 HOH A 67 409 67 HOH HOH . F 4 HOH A 68 410 68 HOH HOH . F 4 HOH A 69 411 69 HOH HOH . F 4 HOH A 70 412 70 HOH HOH . F 4 HOH A 71 413 71 HOH HOH . F 4 HOH A 72 414 72 HOH HOH . F 4 HOH A 73 415 73 HOH HOH . F 4 HOH A 74 416 74 HOH HOH . F 4 HOH A 75 417 75 HOH HOH . F 4 HOH A 76 418 76 HOH HOH . F 4 HOH A 77 419 77 HOH HOH . F 4 HOH A 78 420 78 HOH HOH . F 4 HOH A 79 421 79 HOH HOH . F 4 HOH A 80 422 80 HOH HOH . F 4 HOH A 81 423 81 HOH HOH . F 4 HOH A 82 424 82 HOH HOH . F 4 HOH A 83 425 83 HOH HOH . F 4 HOH A 84 426 84 HOH HOH . F 4 HOH A 85 427 85 HOH HOH . F 4 HOH A 86 428 86 HOH HOH . F 4 HOH A 87 429 87 HOH HOH . F 4 HOH A 88 430 88 HOH HOH . F 4 HOH A 89 431 89 HOH HOH . F 4 HOH A 90 432 90 HOH HOH . F 4 HOH A 91 433 91 HOH HOH . F 4 HOH A 92 434 92 HOH HOH . F 4 HOH A 93 435 93 HOH HOH . F 4 HOH A 94 436 94 HOH HOH . F 4 HOH A 95 437 95 HOH HOH . F 4 HOH A 96 438 96 HOH HOH . F 4 HOH A 97 439 97 HOH HOH . F 4 HOH A 98 440 98 HOH HOH . F 4 HOH A 99 441 99 HOH HOH . F 4 HOH A 100 442 100 HOH HOH . F 4 HOH A 101 443 101 HOH HOH . F 4 HOH A 102 444 102 HOH HOH . F 4 HOH A 103 445 103 HOH HOH . F 4 HOH A 104 446 104 HOH HOH . F 4 HOH A 105 447 105 HOH HOH . F 4 HOH A 106 448 106 HOH HOH . F 4 HOH A 107 449 107 HOH HOH . F 4 HOH A 108 450 108 HOH HOH . F 4 HOH A 109 451 109 HOH HOH . F 4 HOH A 110 452 110 HOH HOH . F 4 HOH A 111 453 111 HOH HOH . F 4 HOH A 112 454 112 HOH HOH . F 4 HOH A 113 455 113 HOH HOH . F 4 HOH A 114 456 114 HOH HOH . F 4 HOH A 115 457 115 HOH HOH . F 4 HOH A 116 458 116 HOH HOH . F 4 HOH A 117 459 117 HOH HOH . F 4 HOH A 118 460 118 HOH HOH . F 4 HOH A 119 461 119 HOH HOH . F 4 HOH A 120 462 120 HOH HOH . F 4 HOH A 121 463 121 HOH HOH . F 4 HOH A 122 464 122 HOH HOH . F 4 HOH A 123 465 123 HOH HOH . F 4 HOH A 124 466 124 HOH HOH . F 4 HOH A 125 467 125 HOH HOH . F 4 HOH A 126 468 126 HOH HOH . F 4 HOH A 127 469 127 HOH HOH . F 4 HOH A 128 470 128 HOH HOH . F 4 HOH A 129 471 129 HOH HOH . F 4 HOH A 130 472 130 HOH HOH . F 4 HOH A 131 473 131 HOH HOH . F 4 HOH A 132 474 132 HOH HOH . F 4 HOH A 133 475 133 HOH HOH . F 4 HOH A 134 476 134 HOH HOH . F 4 HOH A 135 477 135 HOH HOH . F 4 HOH A 136 478 136 HOH HOH . F 4 HOH A 137 479 137 HOH HOH . F 4 HOH A 138 480 138 HOH HOH . F 4 HOH A 139 481 139 HOH HOH . F 4 HOH A 140 482 140 HOH HOH . F 4 HOH A 141 483 141 HOH HOH . F 4 HOH A 142 484 142 HOH HOH . F 4 HOH A 143 485 143 HOH HOH . F 4 HOH A 144 486 144 HOH HOH . F 4 HOH A 145 487 145 HOH HOH . F 4 HOH A 146 488 146 HOH HOH . F 4 HOH A 147 489 147 HOH HOH . F 4 HOH A 148 490 148 HOH HOH . F 4 HOH A 149 491 149 HOH HOH . F 4 HOH A 150 492 150 HOH HOH . F 4 HOH A 151 493 151 HOH HOH . F 4 HOH A 152 494 152 HOH HOH . F 4 HOH A 153 495 153 HOH HOH . F 4 HOH A 154 496 154 HOH HOH . F 4 HOH A 155 497 155 HOH HOH . F 4 HOH A 156 498 156 HOH HOH . F 4 HOH A 157 499 157 HOH HOH . F 4 HOH A 158 500 158 HOH HOH . F 4 HOH A 159 501 159 HOH HOH . F 4 HOH A 160 502 160 HOH HOH . F 4 HOH A 161 503 161 HOH HOH . F 4 HOH A 162 504 162 HOH HOH . F 4 HOH A 163 505 163 HOH HOH . F 4 HOH A 164 506 164 HOH HOH . F 4 HOH A 165 507 165 HOH HOH . F 4 HOH A 166 508 166 HOH HOH . F 4 HOH A 167 509 167 HOH HOH . F 4 HOH A 168 510 168 HOH HOH . F 4 HOH A 169 511 169 HOH HOH . F 4 HOH A 170 512 170 HOH HOH . F 4 HOH A 171 513 171 HOH HOH . F 4 HOH A 172 514 172 HOH HOH . F 4 HOH A 173 515 173 HOH HOH . F 4 HOH A 174 516 174 HOH HOH . F 4 HOH A 175 517 175 HOH HOH . F 4 HOH A 176 518 176 HOH HOH . F 4 HOH A 177 519 177 HOH HOH . F 4 HOH A 178 520 178 HOH HOH . F 4 HOH A 179 521 179 HOH HOH . F 4 HOH A 180 522 180 HOH HOH . F 4 HOH A 181 523 181 HOH HOH . F 4 HOH A 182 524 182 HOH HOH . F 4 HOH A 183 525 183 HOH HOH . F 4 HOH A 184 526 184 HOH HOH . F 4 HOH A 185 527 185 HOH HOH . F 4 HOH A 186 528 186 HOH HOH . F 4 HOH A 187 529 187 HOH HOH . F 4 HOH A 188 530 188 HOH HOH . F 4 HOH A 189 531 189 HOH HOH . F 4 HOH A 190 532 190 HOH HOH . F 4 HOH A 191 533 191 HOH HOH . F 4 HOH A 192 534 192 HOH HOH . F 4 HOH A 193 535 193 HOH HOH . F 4 HOH A 194 536 194 HOH HOH . F 4 HOH A 195 537 195 HOH HOH . F 4 HOH A 196 538 196 HOH HOH . F 4 HOH A 197 539 197 HOH HOH . F 4 HOH A 198 540 198 HOH HOH . F 4 HOH A 199 541 199 HOH HOH . F 4 HOH A 200 542 200 HOH HOH . F 4 HOH A 201 543 201 HOH HOH . F 4 HOH A 202 544 202 HOH HOH . F 4 HOH A 203 545 203 HOH HOH . F 4 HOH A 204 546 204 HOH HOH . F 4 HOH A 205 547 205 HOH HOH . F 4 HOH A 206 548 206 HOH HOH . F 4 HOH A 207 549 207 HOH HOH . F 4 HOH A 208 550 208 HOH HOH . F 4 HOH A 209 551 209 HOH HOH . F 4 HOH A 210 552 210 HOH HOH . F 4 HOH A 211 553 211 HOH HOH . F 4 HOH A 212 554 212 HOH HOH . F 4 HOH A 213 555 213 HOH HOH . F 4 HOH A 214 556 214 HOH HOH . F 4 HOH A 215 557 215 HOH HOH . F 4 HOH A 216 558 216 HOH HOH . F 4 HOH A 217 559 217 HOH HOH . F 4 HOH A 218 560 218 HOH HOH . F 4 HOH A 219 561 219 HOH HOH . F 4 HOH A 220 562 220 HOH HOH . F 4 HOH A 221 563 221 HOH HOH . F 4 HOH A 222 564 222 HOH HOH . F 4 HOH A 223 565 223 HOH HOH . F 4 HOH A 224 566 224 HOH HOH . F 4 HOH A 225 567 225 HOH HOH . F 4 HOH A 226 568 226 HOH HOH . F 4 HOH A 227 569 227 HOH HOH . F 4 HOH A 228 570 228 HOH HOH . F 4 HOH A 229 571 229 HOH HOH . F 4 HOH A 230 572 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 20.021 14.128 14.665 1 17.41 ? C1 GOL 342 A 1 HETATM 2 O O1 GOL . . . E 3 20.665 13.502 13.581 1 18.08 ? O1 GOL 342 A 1 HETATM 3 C C2 GOL . . . E 3 20.94 15.148 15.325 1 16.31 ? C2 GOL 342 A 1 HETATM 4 O O2 GOL . . . E 3 21.996 14.547 16.044 1 16.39 ? O2 GOL 342 A 1 HETATM 5 C C3 GOL . . . E 3 21.492 16.084 14.258 1 15.4 ? C3 GOL 342 A 1 HETATM 6 O O3 GOL . . . E 3 21.89 17.298 14.85 1 14.52 ? O3 GOL 342 A 1 HETATM 7 H H11 GOL . . . E 3 19.125 14.635 14.305 1 17.33 ? H11 GOL 342 A 1 HETATM 8 H H12 GOL . . . E 3 19.718 13.379 15.396 1 17.33 ? H12 GOL 342 A 1 HETATM 9 H HO1 GOL . . . E 3 20.568 12.583 13.283 0 20.24 ? HO1 GOL 342 A 1 HETATM 10 H H2 GOL . . . E 3 20.338 15.727 16.023 1 16.37 ? H2 GOL 342 A 1 HETATM 11 H HO2 GOL . . . E 3 22.61 14.532 15.85 0 16.74 ? HO2 GOL 342 A 1 HETATM 12 H H31 GOL . . . E 3 22.348 15.62 13.768 1 15.41 ? H31 GOL 342 A 1 HETATM 13 H H32 GOL . . . E 3 20.73 16.276 13.503 1 15.41 ? H32 GOL 342 A 1 HETATM 14 H HO3 GOL . . . E 3 22.11 17.145 15.791 1 14.78 ? HO3 GOL 342 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #