data_2NWX # _model_server_result.job_id Sl6LW8lpFzwsf2_UBm5tqQ _model_server_result.datetime_utc '2024-11-15 22:43:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":423}' # _entry.id 2NWX # _exptl.entry_id 2NWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NWX _cell.length_a 115.473 _cell.length_b 115.473 _cell.length_c 324.227 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 306 A GLY 306 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc2 A O THR 308 A THR 308 1_555 D NA NA . A NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc3 A O ASN 310 A ASN 310 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 A O THR 352 A THR 352 1_555 D NA NA . A NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 A O ASN 401 A ASN 401 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 A OD1 ASP 405 A ASP 405 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 A OD2 ASP 405 A ASP 405 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc8 B O GLY 306 B GLY 306 1_555 K NA NA . B NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc9 B O THR 308 B THR 308 1_555 J NA NA . B NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc10 B O ASN 310 B ASN 310 1_555 K NA NA . B NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc11 B O SER 349 B SER 349 1_555 J NA NA . B NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc12 B O THR 352 B THR 352 1_555 J NA NA . B NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc13 B O ASN 401 B ASN 401 1_555 K NA NA . B NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc14 B OD1 ASP 405 B ASP 405 1_555 K NA NA . B NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc15 B OD2 ASP 405 B ASP 405 1_555 K NA NA . B NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc16 C O GLY 306 C GLY 306 1_555 N NA NA . C NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc17 C O THR 308 C THR 308 1_555 M NA NA . C NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc18 C O ASN 310 C ASN 310 1_555 N NA NA . C NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc19 C O SER 349 C SER 349 1_555 M NA NA . C NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc20 C O THR 352 C THR 352 1_555 M NA NA . C NA 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc21 C O ASN 401 C ASN 401 1_555 N NA NA . C NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc22 C OD2 ASP 405 C ASP 405 1_555 N NA NA . C NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NWX _atom_sites.fract_transf_matrix[1][1] 0.00866 _atom_sites.fract_transf_matrix[1][2] 0.005 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 423 1 NA NA . E 2 NA A 1 424 2 NA NA . F 3 ASP A 1 425 10 ASP ASP . G 3 ASP A 1 426 11 ASP ASP . H 3 ASP A 1 427 12 ASP ASP . I 4 PLM A 1 428 101 PLM PLY . J 2 NA B 1 423 3 NA NA . K 2 NA B 1 424 4 NA NA . L 4 PLM B 1 425 102 PLM PLY . M 2 NA C 1 423 5 NA NA . N 2 NA C 1 424 6 NA NA . O 4 PLM C 1 425 102 PLM PLY . P 5 HOH A 1 429 7 HOH HOH . Q 5 HOH B 1 426 8 HOH HOH . R 5 HOH C 1 426 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.395 _atom_site.Cartn_y 1.875 _atom_site.Cartn_z 9.801 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 423 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #