data_2NXB # _model_server_result.job_id D1_aQ5YcLpZeB8sdcmGlbw _model_server_result.datetime_utc '2024-11-05 21:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 2NXB # _exptl.entry_id 2NXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NXB _cell.length_a 51.504 _cell.length_b 61.84 _cell.length_c 84.523 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 15 A THR 36 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc2 A OE1 GLN 17 A GLN 38 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc3 A OG SER 76 A SER 97 1_555 C NA NA . A NA 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc4 A N ALA 77 A ALA 98 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2NXB _atom_sites.fract_transf_matrix[1][1] 0.019416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 301 NA NA . D 3 EDO A 1 302 302 EDO EDO . E 3 EDO A 1 307 307 EDO EDO . F 3 EDO B 1 303 303 EDO EDO . G 3 EDO B 1 304 304 EDO EDO . H 3 EDO B 1 305 305 EDO EDO . I 3 EDO B 1 306 306 EDO EDO . J 3 EDO B 1 308 308 EDO EDO . K 4 HOH A 1 308 1 HOH HOH . K 4 HOH A 2 309 6 HOH HOH . K 4 HOH A 3 310 7 HOH HOH . K 4 HOH A 4 311 9 HOH HOH . K 4 HOH A 5 312 11 HOH HOH . K 4 HOH A 6 313 12 HOH HOH . K 4 HOH A 7 314 14 HOH HOH . K 4 HOH A 8 315 15 HOH HOH . K 4 HOH A 9 316 16 HOH HOH . K 4 HOH A 10 317 17 HOH HOH . K 4 HOH A 11 318 20 HOH HOH . K 4 HOH A 12 319 21 HOH HOH . K 4 HOH A 13 320 22 HOH HOH . K 4 HOH A 14 321 26 HOH HOH . K 4 HOH A 15 322 27 HOH HOH . K 4 HOH A 16 323 30 HOH HOH . K 4 HOH A 17 324 32 HOH HOH . K 4 HOH A 18 325 33 HOH HOH . K 4 HOH A 19 326 44 HOH HOH . K 4 HOH A 20 327 47 HOH HOH . K 4 HOH A 21 328 48 HOH HOH . K 4 HOH A 22 329 51 HOH HOH . K 4 HOH A 23 330 53 HOH HOH . K 4 HOH A 24 331 55 HOH HOH . K 4 HOH A 25 332 59 HOH HOH . K 4 HOH A 26 333 62 HOH HOH . K 4 HOH A 27 334 65 HOH HOH . K 4 HOH A 28 335 66 HOH HOH . K 4 HOH A 29 336 67 HOH HOH . K 4 HOH A 30 337 68 HOH HOH . K 4 HOH A 31 338 69 HOH HOH . K 4 HOH A 32 339 75 HOH HOH . K 4 HOH A 33 340 84 HOH HOH . K 4 HOH A 34 341 85 HOH HOH . K 4 HOH A 35 342 86 HOH HOH . K 4 HOH A 36 343 88 HOH HOH . K 4 HOH A 37 344 90 HOH HOH . K 4 HOH A 38 345 91 HOH HOH . K 4 HOH A 39 346 92 HOH HOH . K 4 HOH A 40 347 93 HOH HOH . K 4 HOH A 41 348 96 HOH HOH . K 4 HOH A 42 349 97 HOH HOH . K 4 HOH A 43 350 99 HOH HOH . K 4 HOH A 44 351 100 HOH HOH . K 4 HOH A 45 352 102 HOH HOH . K 4 HOH A 46 353 104 HOH HOH . K 4 HOH A 47 354 107 HOH HOH . K 4 HOH A 48 355 109 HOH HOH . K 4 HOH A 49 356 110 HOH HOH . K 4 HOH A 50 357 111 HOH HOH . K 4 HOH A 51 358 114 HOH HOH . K 4 HOH A 52 359 118 HOH HOH . K 4 HOH A 53 360 120 HOH HOH . K 4 HOH A 54 361 121 HOH HOH . K 4 HOH A 55 362 122 HOH HOH . K 4 HOH A 56 363 125 HOH HOH . K 4 HOH A 57 364 127 HOH HOH . K 4 HOH A 58 365 130 HOH HOH . K 4 HOH A 59 366 132 HOH HOH . K 4 HOH A 60 367 133 HOH HOH . K 4 HOH A 61 368 136 HOH HOH . K 4 HOH A 62 369 137 HOH HOH . K 4 HOH A 63 370 140 HOH HOH . K 4 HOH A 64 371 141 HOH HOH . K 4 HOH A 65 372 142 HOH HOH . K 4 HOH A 66 373 147 HOH HOH . K 4 HOH A 67 374 148 HOH HOH . K 4 HOH A 68 375 156 HOH HOH . K 4 HOH A 69 376 161 HOH HOH . K 4 HOH A 70 377 162 HOH HOH . K 4 HOH A 71 378 169 HOH HOH . K 4 HOH A 72 379 170 HOH HOH . K 4 HOH A 73 380 171 HOH HOH . K 4 HOH A 74 381 173 HOH HOH . K 4 HOH A 75 382 174 HOH HOH . K 4 HOH A 76 383 175 HOH HOH . K 4 HOH A 77 384 178 HOH HOH . K 4 HOH A 78 385 179 HOH HOH . K 4 HOH A 79 386 180 HOH HOH . K 4 HOH A 80 387 181 HOH HOH . K 4 HOH A 81 388 182 HOH HOH . K 4 HOH A 82 389 183 HOH HOH . K 4 HOH A 83 390 186 HOH HOH . K 4 HOH A 84 391 190 HOH HOH . K 4 HOH A 85 392 192 HOH HOH . K 4 HOH A 86 393 194 HOH HOH . K 4 HOH A 87 394 195 HOH HOH . K 4 HOH A 88 395 196 HOH HOH . K 4 HOH A 89 396 197 HOH HOH . K 4 HOH A 90 397 199 HOH HOH . K 4 HOH A 91 398 203 HOH HOH . K 4 HOH A 92 399 207 HOH HOH . K 4 HOH A 93 400 208 HOH HOH . K 4 HOH A 94 401 209 HOH HOH . K 4 HOH A 95 402 216 HOH HOH . K 4 HOH A 96 403 217 HOH HOH . K 4 HOH A 97 404 219 HOH HOH . K 4 HOH A 98 405 220 HOH HOH . K 4 HOH A 99 406 221 HOH HOH . K 4 HOH A 100 407 222 HOH HOH . K 4 HOH A 101 408 225 HOH HOH . K 4 HOH A 102 409 226 HOH HOH . K 4 HOH A 103 410 227 HOH HOH . K 4 HOH A 104 411 230 HOH HOH . K 4 HOH A 105 412 233 HOH HOH . K 4 HOH A 106 413 239 HOH HOH . K 4 HOH A 107 414 246 HOH HOH . K 4 HOH A 108 415 251 HOH HOH . K 4 HOH A 109 416 255 HOH HOH . K 4 HOH A 110 417 256 HOH HOH . K 4 HOH A 111 418 257 HOH HOH . K 4 HOH A 112 419 260 HOH HOH . K 4 HOH A 113 420 264 HOH HOH . K 4 HOH A 114 421 265 HOH HOH . K 4 HOH A 115 422 266 HOH HOH . K 4 HOH A 116 423 267 HOH HOH . K 4 HOH A 117 424 269 HOH HOH . K 4 HOH A 118 425 270 HOH HOH . K 4 HOH A 119 426 271 HOH HOH . K 4 HOH A 120 427 272 HOH HOH . K 4 HOH A 121 428 273 HOH HOH . K 4 HOH A 122 429 275 HOH HOH . K 4 HOH A 123 430 277 HOH HOH . L 4 HOH B 1 309 2 HOH HOH . L 4 HOH B 2 310 3 HOH HOH . L 4 HOH B 3 311 4 HOH HOH . L 4 HOH B 4 312 5 HOH HOH . L 4 HOH B 5 313 8 HOH HOH . L 4 HOH B 6 314 10 HOH HOH . L 4 HOH B 7 315 13 HOH HOH . L 4 HOH B 8 316 18 HOH HOH . L 4 HOH B 9 317 19 HOH HOH . L 4 HOH B 10 318 23 HOH HOH . L 4 HOH B 11 319 24 HOH HOH . L 4 HOH B 12 320 25 HOH HOH . L 4 HOH B 13 321 28 HOH HOH . L 4 HOH B 14 322 29 HOH HOH . L 4 HOH B 15 323 31 HOH HOH . L 4 HOH B 16 324 34 HOH HOH . L 4 HOH B 17 325 35 HOH HOH . L 4 HOH B 18 326 36 HOH HOH . L 4 HOH B 19 327 37 HOH HOH . L 4 HOH B 20 328 38 HOH HOH . L 4 HOH B 21 329 39 HOH HOH . L 4 HOH B 22 330 40 HOH HOH . L 4 HOH B 23 331 41 HOH HOH . L 4 HOH B 24 332 42 HOH HOH . L 4 HOH B 25 333 43 HOH HOH . L 4 HOH B 26 334 45 HOH HOH . L 4 HOH B 27 335 46 HOH HOH . L 4 HOH B 28 336 49 HOH HOH . L 4 HOH B 29 337 50 HOH HOH . L 4 HOH B 30 338 52 HOH HOH . L 4 HOH B 31 339 54 HOH HOH . L 4 HOH B 32 340 56 HOH HOH . L 4 HOH B 33 341 57 HOH HOH . L 4 HOH B 34 342 58 HOH HOH . L 4 HOH B 35 343 60 HOH HOH . L 4 HOH B 36 344 61 HOH HOH . L 4 HOH B 37 345 63 HOH HOH . L 4 HOH B 38 346 64 HOH HOH . L 4 HOH B 39 347 70 HOH HOH . L 4 HOH B 40 348 71 HOH HOH . L 4 HOH B 41 349 72 HOH HOH . L 4 HOH B 42 350 73 HOH HOH . L 4 HOH B 43 351 74 HOH HOH . L 4 HOH B 44 352 76 HOH HOH . L 4 HOH B 45 353 77 HOH HOH . L 4 HOH B 46 354 78 HOH HOH . L 4 HOH B 47 355 79 HOH HOH . L 4 HOH B 48 356 80 HOH HOH . L 4 HOH B 49 357 81 HOH HOH . L 4 HOH B 50 358 82 HOH HOH . L 4 HOH B 51 359 83 HOH HOH . L 4 HOH B 52 360 87 HOH HOH . L 4 HOH B 53 361 89 HOH HOH . L 4 HOH B 54 362 94 HOH HOH . L 4 HOH B 55 363 95 HOH HOH . L 4 HOH B 56 364 98 HOH HOH . L 4 HOH B 57 365 101 HOH HOH . L 4 HOH B 58 366 103 HOH HOH . L 4 HOH B 59 367 105 HOH HOH . L 4 HOH B 60 368 106 HOH HOH . L 4 HOH B 61 369 108 HOH HOH . L 4 HOH B 62 370 112 HOH HOH . L 4 HOH B 63 371 113 HOH HOH . L 4 HOH B 64 372 115 HOH HOH . L 4 HOH B 65 373 116 HOH HOH . L 4 HOH B 66 374 117 HOH HOH . L 4 HOH B 67 375 119 HOH HOH . L 4 HOH B 68 376 123 HOH HOH . L 4 HOH B 69 377 124 HOH HOH . L 4 HOH B 70 378 126 HOH HOH . L 4 HOH B 71 379 128 HOH HOH . L 4 HOH B 72 380 129 HOH HOH . L 4 HOH B 73 381 131 HOH HOH . L 4 HOH B 74 382 134 HOH HOH . L 4 HOH B 75 383 135 HOH HOH . L 4 HOH B 76 384 138 HOH HOH . L 4 HOH B 77 385 139 HOH HOH . L 4 HOH B 78 386 143 HOH HOH . L 4 HOH B 79 387 144 HOH HOH . L 4 HOH B 80 388 145 HOH HOH . L 4 HOH B 81 389 146 HOH HOH . L 4 HOH B 82 390 149 HOH HOH . L 4 HOH B 83 391 150 HOH HOH . L 4 HOH B 84 392 151 HOH HOH . L 4 HOH B 85 393 152 HOH HOH . L 4 HOH B 86 394 153 HOH HOH . L 4 HOH B 87 395 154 HOH HOH . L 4 HOH B 88 396 155 HOH HOH . L 4 HOH B 89 397 157 HOH HOH . L 4 HOH B 90 398 158 HOH HOH . L 4 HOH B 91 399 159 HOH HOH . L 4 HOH B 92 400 160 HOH HOH . L 4 HOH B 93 401 163 HOH HOH . L 4 HOH B 94 402 164 HOH HOH . L 4 HOH B 95 403 165 HOH HOH . L 4 HOH B 96 404 166 HOH HOH . L 4 HOH B 97 405 167 HOH HOH . L 4 HOH B 98 406 168 HOH HOH . L 4 HOH B 99 407 172 HOH HOH . L 4 HOH B 100 408 176 HOH HOH . L 4 HOH B 101 409 177 HOH HOH . L 4 HOH B 102 410 184 HOH HOH . L 4 HOH B 103 411 185 HOH HOH . L 4 HOH B 104 412 187 HOH HOH . L 4 HOH B 105 413 188 HOH HOH . L 4 HOH B 106 414 189 HOH HOH . L 4 HOH B 107 415 191 HOH HOH . L 4 HOH B 108 416 193 HOH HOH . L 4 HOH B 109 417 198 HOH HOH . L 4 HOH B 110 418 200 HOH HOH . L 4 HOH B 111 419 201 HOH HOH . L 4 HOH B 112 420 202 HOH HOH . L 4 HOH B 113 421 204 HOH HOH . L 4 HOH B 114 422 205 HOH HOH . L 4 HOH B 115 423 206 HOH HOH . L 4 HOH B 116 424 210 HOH HOH . L 4 HOH B 117 425 211 HOH HOH . L 4 HOH B 118 426 212 HOH HOH . L 4 HOH B 119 427 213 HOH HOH . L 4 HOH B 120 428 214 HOH HOH . L 4 HOH B 121 429 215 HOH HOH . L 4 HOH B 122 430 218 HOH HOH . L 4 HOH B 123 431 223 HOH HOH . L 4 HOH B 124 432 224 HOH HOH . L 4 HOH B 125 433 228 HOH HOH . L 4 HOH B 126 434 229 HOH HOH . L 4 HOH B 127 435 231 HOH HOH . L 4 HOH B 128 436 232 HOH HOH . L 4 HOH B 129 437 234 HOH HOH . L 4 HOH B 130 438 235 HOH HOH . L 4 HOH B 131 439 236 HOH HOH . L 4 HOH B 132 440 237 HOH HOH . L 4 HOH B 133 441 238 HOH HOH . L 4 HOH B 134 442 240 HOH HOH . L 4 HOH B 135 443 241 HOH HOH . L 4 HOH B 136 444 242 HOH HOH . L 4 HOH B 137 445 243 HOH HOH . L 4 HOH B 138 446 244 HOH HOH . L 4 HOH B 139 447 245 HOH HOH . L 4 HOH B 140 448 247 HOH HOH . L 4 HOH B 141 449 248 HOH HOH . L 4 HOH B 142 450 249 HOH HOH . L 4 HOH B 143 451 250 HOH HOH . L 4 HOH B 144 452 252 HOH HOH . L 4 HOH B 145 453 253 HOH HOH . L 4 HOH B 146 454 254 HOH HOH . L 4 HOH B 147 455 258 HOH HOH . L 4 HOH B 148 456 259 HOH HOH . L 4 HOH B 149 457 261 HOH HOH . L 4 HOH B 150 458 262 HOH HOH . L 4 HOH B 151 459 263 HOH HOH . L 4 HOH B 152 460 268 HOH HOH . L 4 HOH B 153 461 274 HOH HOH . L 4 HOH B 154 462 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -13.279 0.613 -6.088 1 29.17 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 -14.616 0.154 -6.341 1 28.65 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 -12.589 -0.337 -5.114 1 29.44 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 -12.356 -1.62 -5.723 1 27.14 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #