data_2NXG # _model_server_result.job_id t7vowYoVy8bZ_GM-RQEyTw _model_server_result.datetime_utc '2024-11-24 20:44:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2269}' # _entry.id 2NXG # _exptl.entry_id 2NXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.167 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4R,5R,6R,7R)-2,4,5,6,7-PENTAHYDROXY-2,8-BIS(PHOSPHONOOXY)OCTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NXG _cell.length_a 84.155 _cell.length_b 84.155 _cell.length_c 160.647 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O15 P2' _chem_comp.formula_weight 416.167 _chem_comp.id 1NT _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4R,5R,6R,7R)-2,4,5,6,7-PENTAHYDROXY-2,8-BIS(PHOSPHONOOXY)OCTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2P P 1NT sing 1 n n O2P HO2P 1NT sing 2 n n P O3P 1NT doub 3 n n P O2 1NT sing 4 n n P O1P 1NT sing 5 n n O1P HO1P 1NT sing 6 n n O2 C2 1NT sing 7 n n C2 O3 1NT sing 8 n n C2 C1 1NT sing 9 n n C2 CI3 1NT sing 10 n n C1 O2' 1NT doub 11 n n C1 O1 1NT sing 12 n n O1 HO1 1NT sing 13 n n O3 HO3 1NT sing 14 n n CI3 CA1 1NT sing 15 n n CI3 HI31 1NT sing 16 n n CI3 HI32 1NT sing 17 n n CA1 OA1 1NT sing 18 n n CA1 CA2 1NT sing 19 n n CA1 HA1 1NT sing 20 n n OA1 HOA1 1NT sing 21 n n CA2 CA3 1NT sing 22 n n CA2 OA2 1NT sing 23 n n CA2 HA2 1NT sing 24 n n OA2 HOA2 1NT sing 25 n n CA3 OA3 1NT sing 26 n n CA3 CA4 1NT sing 27 n n CA3 HA3 1NT sing 28 n n OA3 HOA3 1NT sing 29 n n CA4 CA5 1NT sing 30 n n CA4 OA4 1NT sing 31 n n CA4 HA4 1NT sing 32 n n OA4 HOA4 1NT sing 33 n n CA5 OP4 1NT sing 34 n n CA5 HA51 1NT sing 35 n n CA5 HA52 1NT sing 36 n n OP4 PA 1NT sing 37 n n PA OP2 1NT doub 38 n n PA OP1 1NT sing 39 n n PA OP3 1NT sing 40 n n OP3 HOP3 1NT sing 41 n n OP1 HOP1 1NT sing 42 n n # _atom_sites.entry_id 2NXG _atom_sites.fract_transf_matrix[1][1] 0.011883 _atom_sites.fract_transf_matrix[1][2] 0.006861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEP A 1 1268 1268 PEP PEP . D 3 A5P A 1 1269 1269 A5P A5P . E 4 1NT B 1 2269 2269 1NT INT . F 5 HOH A 1 3000 3000 HOH HOH . F 5 HOH A 2 3001 3001 HOH HOH . F 5 HOH A 3 3004 3004 HOH HOH . F 5 HOH A 4 3005 3005 HOH HOH . F 5 HOH A 5 3006 3006 HOH HOH . F 5 HOH A 6 3007 3007 HOH HOH . F 5 HOH A 7 3009 3009 HOH HOH . F 5 HOH A 8 3011 3011 HOH HOH . F 5 HOH A 9 3012 3012 HOH HOH . F 5 HOH A 10 3013 3013 HOH HOH . F 5 HOH A 11 3019 3019 HOH HOH . F 5 HOH A 12 3020 3020 HOH HOH . F 5 HOH A 13 3024 3024 HOH HOH . F 5 HOH A 14 3026 3026 HOH HOH . F 5 HOH A 15 3027 3027 HOH HOH . F 5 HOH A 16 3028 3028 HOH HOH . F 5 HOH A 17 3029 3029 HOH HOH . F 5 HOH A 18 3032 3032 HOH HOH . F 5 HOH A 19 3033 3033 HOH HOH . F 5 HOH A 20 3036 3036 HOH HOH . F 5 HOH A 21 3044 3044 HOH HOH . F 5 HOH A 22 3046 3046 HOH HOH . F 5 HOH A 23 3048 3048 HOH HOH . F 5 HOH A 24 3049 3049 HOH HOH . F 5 HOH A 25 3050 3050 HOH HOH . F 5 HOH A 26 3052 3052 HOH HOH . F 5 HOH A 27 3053 3053 HOH HOH . F 5 HOH A 28 3054 3054 HOH HOH . F 5 HOH A 29 3056 3056 HOH HOH . F 5 HOH A 30 3057 3057 HOH HOH . F 5 HOH A 31 3058 3058 HOH HOH . F 5 HOH A 32 3062 3062 HOH HOH . F 5 HOH A 33 3063 3063 HOH HOH . F 5 HOH A 34 3064 3064 HOH HOH . F 5 HOH A 35 3066 3066 HOH HOH . F 5 HOH A 36 3070 3070 HOH HOH . F 5 HOH A 37 3074 3074 HOH HOH . F 5 HOH A 38 3075 3075 HOH HOH . F 5 HOH A 39 3078 3078 HOH HOH . F 5 HOH A 40 3079 3079 HOH HOH . F 5 HOH A 41 3080 3080 HOH HOH . F 5 HOH A 42 3081 3081 HOH HOH . F 5 HOH A 43 3082 3082 HOH HOH . F 5 HOH A 44 3083 3083 HOH HOH . F 5 HOH A 45 3084 3084 HOH HOH . F 5 HOH A 46 3086 3086 HOH HOH . F 5 HOH A 47 3087 3087 HOH HOH . F 5 HOH A 48 3088 3088 HOH HOH . F 5 HOH A 49 3090 3090 HOH HOH . F 5 HOH A 50 3092 3092 HOH HOH . F 5 HOH A 51 3093 3093 HOH HOH . F 5 HOH A 52 3097 3097 HOH HOH . F 5 HOH A 53 3101 3101 HOH HOH . F 5 HOH A 54 3103 3103 HOH HOH . F 5 HOH A 55 3104 3104 HOH HOH . F 5 HOH A 56 3107 3107 HOH HOH . F 5 HOH A 57 3108 3108 HOH HOH . F 5 HOH A 58 3112 3112 HOH HOH . F 5 HOH A 59 3113 3113 HOH HOH . F 5 HOH A 60 3115 3115 HOH HOH . F 5 HOH A 61 3118 3118 HOH HOH . F 5 HOH A 62 3120 3120 HOH HOH . F 5 HOH A 63 3122 3122 HOH HOH . F 5 HOH A 64 3124 3124 HOH HOH . F 5 HOH A 65 3127 3127 HOH HOH . F 5 HOH A 66 3128 3128 HOH HOH . F 5 HOH A 67 3132 3132 HOH HOH . F 5 HOH A 68 3135 3135 HOH HOH . F 5 HOH A 69 3136 3136 HOH HOH . F 5 HOH A 70 3141 3141 HOH HOH . F 5 HOH A 71 3145 3145 HOH HOH . F 5 HOH A 72 3150 3150 HOH HOH . F 5 HOH A 73 3151 3151 HOH HOH . F 5 HOH A 74 3155 3155 HOH HOH . F 5 HOH A 75 3163 3163 HOH HOH . F 5 HOH A 76 3164 3164 HOH HOH . F 5 HOH A 77 3168 3168 HOH HOH . F 5 HOH A 78 3169 3169 HOH HOH . F 5 HOH A 79 3170 3170 HOH HOH . F 5 HOH A 80 3171 3171 HOH HOH . F 5 HOH A 81 3173 3173 HOH HOH . F 5 HOH A 82 3180 3180 HOH HOH . F 5 HOH A 83 3183 3183 HOH HOH . F 5 HOH A 84 3186 3186 HOH HOH . F 5 HOH A 85 3187 3187 HOH HOH . F 5 HOH A 86 3190 3190 HOH HOH . F 5 HOH A 87 3192 3192 HOH HOH . F 5 HOH A 88 3194 3194 HOH HOH . F 5 HOH A 89 3196 3196 HOH HOH . F 5 HOH A 90 3199 3199 HOH HOH . F 5 HOH A 91 3203 3203 HOH HOH . F 5 HOH A 92 3204 3204 HOH HOH . F 5 HOH A 93 3207 3207 HOH HOH . F 5 HOH A 94 3211 3211 HOH HOH . F 5 HOH A 95 3214 3214 HOH HOH . F 5 HOH A 96 3216 3216 HOH HOH . F 5 HOH A 97 3217 3217 HOH HOH . F 5 HOH A 98 3219 3219 HOH HOH . F 5 HOH A 99 3221 3221 HOH HOH . F 5 HOH A 100 3223 3223 HOH HOH . F 5 HOH A 101 3226 3226 HOH HOH . F 5 HOH A 102 3231 3231 HOH HOH . F 5 HOH A 103 3233 3233 HOH HOH . F 5 HOH A 104 3235 3235 HOH HOH . F 5 HOH A 105 3238 3238 HOH HOH . F 5 HOH A 106 3243 3243 HOH HOH . F 5 HOH A 107 3246 3246 HOH HOH . F 5 HOH A 108 3248 3248 HOH HOH . F 5 HOH A 109 3252 3252 HOH HOH . F 5 HOH A 110 3253 3253 HOH HOH . F 5 HOH A 111 3259 3259 HOH HOH . F 5 HOH A 112 3260 3260 HOH HOH . F 5 HOH A 113 3261 3261 HOH HOH . F 5 HOH A 114 3264 3264 HOH HOH . F 5 HOH A 115 3271 3271 HOH HOH . F 5 HOH A 116 3273 3273 HOH HOH . F 5 HOH A 117 3277 3277 HOH HOH . F 5 HOH A 118 3282 3282 HOH HOH . F 5 HOH A 119 3290 3290 HOH HOH . F 5 HOH A 120 3309 3309 HOH HOH . F 5 HOH A 121 3310 3310 HOH HOH . F 5 HOH A 122 3318 3318 HOH HOH . F 5 HOH A 123 3335 3335 HOH HOH . F 5 HOH A 124 3345 3345 HOH HOH . F 5 HOH A 125 3352 3352 HOH HOH . F 5 HOH A 126 3354 3354 HOH HOH . F 5 HOH A 127 3358 3358 HOH HOH . G 5 HOH B 1 3002 3002 HOH HOH . G 5 HOH B 2 3003 3003 HOH HOH . G 5 HOH B 3 3014 3014 HOH HOH . G 5 HOH B 4 3015 3015 HOH HOH . G 5 HOH B 5 3016 3016 HOH HOH . G 5 HOH B 6 3017 3017 HOH HOH . G 5 HOH B 7 3018 3018 HOH HOH . G 5 HOH B 8 3021 3021 HOH HOH . G 5 HOH B 9 3022 3022 HOH HOH . G 5 HOH B 10 3023 3023 HOH HOH . G 5 HOH B 11 3025 3025 HOH HOH . G 5 HOH B 12 3030 3030 HOH HOH . G 5 HOH B 13 3034 3034 HOH HOH . G 5 HOH B 14 3035 3035 HOH HOH . G 5 HOH B 15 3037 3037 HOH HOH . G 5 HOH B 16 3038 3038 HOH HOH . G 5 HOH B 17 3039 3039 HOH HOH . G 5 HOH B 18 3040 3040 HOH HOH . G 5 HOH B 19 3041 3041 HOH HOH . G 5 HOH B 20 3042 3042 HOH HOH . G 5 HOH B 21 3045 3045 HOH HOH . G 5 HOH B 22 3047 3047 HOH HOH . G 5 HOH B 23 3055 3055 HOH HOH . G 5 HOH B 24 3059 3059 HOH HOH . G 5 HOH B 25 3060 3060 HOH HOH . G 5 HOH B 26 3061 3061 HOH HOH . G 5 HOH B 27 3067 3067 HOH HOH . G 5 HOH B 28 3069 3069 HOH HOH . G 5 HOH B 29 3071 3071 HOH HOH . G 5 HOH B 30 3072 3072 HOH HOH . G 5 HOH B 31 3073 3073 HOH HOH . G 5 HOH B 32 3076 3076 HOH HOH . G 5 HOH B 33 3077 3077 HOH HOH . G 5 HOH B 34 3094 3094 HOH HOH . G 5 HOH B 35 3096 3096 HOH HOH . G 5 HOH B 36 3099 3099 HOH HOH . G 5 HOH B 37 3100 3100 HOH HOH . G 5 HOH B 38 3105 3105 HOH HOH . G 5 HOH B 39 3109 3109 HOH HOH . G 5 HOH B 40 3110 3110 HOH HOH . G 5 HOH B 41 3116 3116 HOH HOH . G 5 HOH B 42 3117 3117 HOH HOH . G 5 HOH B 43 3119 3119 HOH HOH . G 5 HOH B 44 3126 3126 HOH HOH . G 5 HOH B 45 3131 3131 HOH HOH . G 5 HOH B 46 3133 3133 HOH HOH . G 5 HOH B 47 3138 3138 HOH HOH . G 5 HOH B 48 3139 3139 HOH HOH . G 5 HOH B 49 3140 3140 HOH HOH . G 5 HOH B 50 3142 3142 HOH HOH . G 5 HOH B 51 3143 3143 HOH HOH . G 5 HOH B 52 3144 3144 HOH HOH . G 5 HOH B 53 3147 3147 HOH HOH . G 5 HOH B 54 3149 3149 HOH HOH . G 5 HOH B 55 3154 3154 HOH HOH . G 5 HOH B 56 3156 3156 HOH HOH . G 5 HOH B 57 3157 3157 HOH HOH . G 5 HOH B 58 3158 3158 HOH HOH . G 5 HOH B 59 3161 3161 HOH HOH . G 5 HOH B 60 3165 3165 HOH HOH . G 5 HOH B 61 3166 3166 HOH HOH . G 5 HOH B 62 3177 3177 HOH HOH . G 5 HOH B 63 3178 3178 HOH HOH . G 5 HOH B 64 3182 3182 HOH HOH . G 5 HOH B 65 3188 3188 HOH HOH . G 5 HOH B 66 3189 3189 HOH HOH . G 5 HOH B 67 3198 3198 HOH HOH . G 5 HOH B 68 3202 3202 HOH HOH . G 5 HOH B 69 3208 3208 HOH HOH . G 5 HOH B 70 3210 3210 HOH HOH . G 5 HOH B 71 3215 3215 HOH HOH . G 5 HOH B 72 3220 3220 HOH HOH . G 5 HOH B 73 3224 3224 HOH HOH . G 5 HOH B 74 3228 3228 HOH HOH . G 5 HOH B 75 3232 3232 HOH HOH . G 5 HOH B 76 3239 3239 HOH HOH . G 5 HOH B 77 3241 3241 HOH HOH . G 5 HOH B 78 3244 3244 HOH HOH . G 5 HOH B 79 3247 3247 HOH HOH . G 5 HOH B 80 3250 3250 HOH HOH . G 5 HOH B 81 3269 3269 HOH HOH . G 5 HOH B 82 3272 3272 HOH HOH . G 5 HOH B 83 3274 3274 HOH HOH . G 5 HOH B 84 3275 3275 HOH HOH . G 5 HOH B 85 3299 3299 HOH HOH . G 5 HOH B 86 3316 3316 HOH HOH . G 5 HOH B 87 3317 3317 HOH HOH . G 5 HOH B 88 3328 3328 HOH HOH . G 5 HOH B 89 3332 3332 HOH HOH . G 5 HOH B 90 3346 3346 HOH HOH . G 5 HOH B 91 3349 3349 HOH HOH . G 5 HOH B 92 3353 3353 HOH HOH . G 5 HOH B 93 3355 3355 HOH HOH . G 5 HOH B 94 3356 3356 HOH HOH . G 5 HOH B 95 3357 3357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2P 1NT . . . E 4 38.572 34.241 9.089 1 53.88 ? O2P 1NT 2269 B 1 HETATM 2 P P 1NT . . . E 4 40.107 34.723 9.127 1 50.41 ? P 1NT 2269 B 1 HETATM 3 O O3P 1NT . . . E 4 40.348 35.508 7.743 1 52.37 ? O3P 1NT 2269 B 1 HETATM 4 O O1P 1NT . . . E 4 40.414 35.542 10.321 1 51.22 ? O1P 1NT 2269 B 1 HETATM 5 O O2 1NT . . . E 4 41.022 33.399 9.039 1 58.39 ? O2 1NT 2269 B 1 HETATM 6 C C2 1NT . . . E 4 40.433 32.127 8.757 1 59.81 ? C2 1NT 2269 B 1 HETATM 7 C C1 1NT . . . E 4 41.517 31.046 8.741 1 61.67 ? C1 1NT 2269 B 1 HETATM 8 O O1 1NT . . . E 4 41.443 30.151 9.611 1 60.87 ? O1 1NT 2269 B 1 HETATM 9 O O2' 1NT . . . E 4 42.402 31.142 7.863 1 58.27 ? O2' 1NT 2269 B 1 HETATM 10 O O3 1NT . . . E 4 39.775 32.17 7.488 1 61.49 ? O3 1NT 2269 B 1 HETATM 11 C CI3 1NT . . . E 4 39.414 31.823 9.856 1 59.77 ? CI3 1NT 2269 B 1 HETATM 12 C CA1 1NT . . . E 4 38.302 30.929 9.306 1 59.93 ? CA1 1NT 2269 B 1 HETATM 13 O OA1 1NT . . . E 4 38.753 29.574 9.239 1 60.57 ? OA1 1NT 2269 B 1 HETATM 14 C CA2 1NT . . . E 4 37.104 31.008 10.251 1 59.35 ? CA2 1NT 2269 B 1 HETATM 15 O OA2 1NT . . . E 4 36.764 32.386 10.433 1 55.98 ? OA2 1NT 2269 B 1 HETATM 16 C CA3 1NT . . . E 4 35.904 30.243 9.692 1 59.33 ? CA3 1NT 2269 B 1 HETATM 17 O OA3 1NT . . . E 4 35.557 30.764 8.407 1 61.37 ? OA3 1NT 2269 B 1 HETATM 18 C CA4 1NT . . . E 4 34.707 30.397 10.631 1 60.12 ? CA4 1NT 2269 B 1 HETATM 19 O OA4 1NT . . . E 4 35.063 29.929 11.935 1 60.08 ? OA4 1NT 2269 B 1 HETATM 20 C CA5 1NT . . . E 4 33.501 29.61 10.117 1 58.21 ? CA5 1NT 2269 B 1 HETATM 21 O OP4 1NT . . . E 4 32.379 29.861 10.964 1 56.33 ? OP4 1NT 2269 B 1 HETATM 22 P PA 1NT . . . E 4 31.056 28.951 10.871 1 55.99 ? PA 1NT 2269 B 1 HETATM 23 O OP3 1NT . . . E 4 30.747 28.481 12.379 1 53.84 ? OP3 1NT 2269 B 1 HETATM 24 O OP1 1NT . . . E 4 29.874 29.953 10.432 1 57.01 ? OP1 1NT 2269 B 1 HETATM 25 O OP2 1NT . . . E 4 31.206 27.813 9.938 1 56.99 ? OP2 1NT 2269 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #