data_2NXQ # _model_server_result.job_id Ykw_09MUxRmBB-XSenyW_A _model_server_result.datetime_utc '2024-12-02 11:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":151}' # _entry.id 2NXQ # _exptl.entry_id 2NXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NXQ _cell.length_a 95.25 _cell.length_b 95.25 _cell.length_c 64.996 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PQS monomeric 1 software_defined_assembly 4 PQS monomeric 1 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1,2,3 B,G,H,I,J,K,M 2 1,2,3 A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2,3 A,C,D,E,F,L 4 1 B,G,H,I,J,K,M 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 47.625 -82.48892 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 95.25 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc2 A OD1 ASN 12 A ASN 12 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 A OD1 ASP 14 A ASP 14 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc4 A O ALA 16 A ALA 16 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 A OE1 GLU 21 A GLU 21 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 A OE2 GLU 21 A GLU 21 1_555 C CA CA . A CA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc7 A OD1 ASP 46 A ASP 46 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc8 A OD1 ASP 48 A ASP 48 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc9 A OD1 ASN 50 A ASN 50 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc10 A O GLU 52 A GLU 52 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 A OE1 GLU 57 A GLU 57 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc12 A OE2 GLU 57 A GLU 57 1_555 D CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc13 C CA CA . A CA 149 1_555 L O HOH . A HOH 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc14 B OD1 ASP 10 B ASP 10 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc15 B OD1 ASN 12 B ASN 12 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc16 B OD1 ASP 14 B ASP 14 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc17 B O ALA 16 B ALA 16 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc18 B OE1 GLU 21 B GLU 21 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc19 B OE2 GLU 21 B GLU 21 1_555 G CA CA . B CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc20 B OD1 ASP 46 B ASP 46 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc21 B OD1 ASP 48 B ASP 48 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc22 B OD1 ASN 50 B ASN 50 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc23 B O GLU 52 B GLU 52 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc24 B OE1 GLU 57 B GLU 57 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc25 B OE2 GLU 57 B GLU 57 1_555 H CA CA . B CA 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc26 G CA CA . B CA 151 1_555 M O HOH . B HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc27 H CA CA . B CA 152 1_555 M O HOH . B HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NXQ _atom_sites.fract_transf_matrix[1][1] 0.010499 _atom_sites.fract_transf_matrix[1][2] 0.006061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 149 149 CA CA . D 2 CA A 1 150 150 CA CA . E 3 ACT A 1 201 201 ACT ACT . F 3 ACT A 1 203 203 ACT ACT . G 2 CA B 1 151 151 CA CA . H 2 CA B 1 152 152 CA CA . I 3 ACT B 1 202 202 ACT ACT . J 3 ACT B 1 204 204 ACT ACT . K 3 ACT B 1 205 205 ACT ACT . L 4 HOH A 1 204 3 HOH HOH . L 4 HOH A 2 205 5 HOH HOH . L 4 HOH A 3 206 11 HOH HOH . L 4 HOH A 4 207 12 HOH HOH . L 4 HOH A 5 208 13 HOH HOH . L 4 HOH A 6 209 15 HOH HOH . L 4 HOH A 7 210 21 HOH HOH . L 4 HOH A 8 211 22 HOH HOH . L 4 HOH A 9 212 24 HOH HOH . L 4 HOH A 10 213 26 HOH HOH . L 4 HOH A 11 214 27 HOH HOH . L 4 HOH A 12 215 28 HOH HOH . L 4 HOH A 13 216 29 HOH HOH . M 4 HOH B 1 206 1 HOH HOH . M 4 HOH B 2 207 2 HOH HOH . M 4 HOH B 3 208 4 HOH HOH . M 4 HOH B 4 209 6 HOH HOH . M 4 HOH B 5 210 7 HOH HOH . M 4 HOH B 6 211 8 HOH HOH . M 4 HOH B 7 212 9 HOH HOH . M 4 HOH B 8 213 10 HOH HOH . M 4 HOH B 9 214 14 HOH HOH . M 4 HOH B 10 215 16 HOH HOH . M 4 HOH B 11 216 17 HOH HOH . M 4 HOH B 12 217 18 HOH HOH . M 4 HOH B 13 218 19 HOH HOH . M 4 HOH B 14 219 20 HOH HOH . M 4 HOH B 15 220 23 HOH HOH . M 4 HOH B 16 221 25 HOH HOH . M 4 HOH B 17 222 30 HOH HOH . M 4 HOH B 18 223 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.108 _atom_site.Cartn_y -26.574 _atom_site.Cartn_z 31.768 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 151 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #