data_2NYT # _model_server_result.job_id J9CUoW83CqkidvBhVode2w _model_server_result.datetime_utc '2025-03-05 02:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 2NYT # _exptl.entry_id 2NYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NYT _cell.length_a 37.841 _cell.length_b 89.41 _cell.length_c 245.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 26 A GLU 60 1_555 E ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A ND1 HIS 64 A HIS 98 1_555 E ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 94 A CYS 128 1_555 E ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A SG CYS 97 A CYS 131 1_555 E ZN ZN . A ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 B ND1 HIS 64 B HIS 98 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 B SG CYS 94 B CYS 128 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc7 B SG CYS 97 B CYS 131 1_555 F ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc8 C OE1 GLU 26 C GLU 60 1_555 G ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 C ND1 HIS 64 C HIS 98 1_555 G ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 C SG CYS 94 C CYS 128 1_555 G ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc11 C SG CYS 97 C CYS 131 1_555 G ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc12 D ND1 HIS 64 D HIS 98 1_555 H ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 D SG CYS 94 D CYS 128 1_555 H ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc14 D SG CYS 97 D CYS 131 1_555 H ZN ZN . D ZN 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NYT _atom_sites.fract_transf_matrix[1][1] 0.026426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2000 2000 ZN ZN . F 2 ZN B 1 2001 2001 ZN ZN . G 2 ZN C 1 2002 2002 ZN ZN . H 2 ZN D 1 2003 2003 ZN ZN . I 3 HOH A 1 1001 1001 HOH HOH . I 3 HOH A 2 1002 1002 HOH HOH . I 3 HOH A 3 1003 1003 HOH HOH . I 3 HOH A 4 1004 1004 HOH HOH . I 3 HOH A 5 1005 1005 HOH HOH . I 3 HOH A 6 1006 1006 HOH HOH . I 3 HOH A 7 1007 1007 HOH HOH . I 3 HOH A 8 1008 1008 HOH HOH . I 3 HOH A 9 1009 1009 HOH HOH . I 3 HOH A 10 1010 1010 HOH HOH . I 3 HOH A 11 1011 1011 HOH HOH . I 3 HOH A 12 1012 1012 HOH HOH . I 3 HOH A 13 1013 1013 HOH HOH . I 3 HOH A 14 1014 1014 HOH HOH . I 3 HOH A 15 1015 1015 HOH HOH . I 3 HOH A 16 1016 1016 HOH HOH . I 3 HOH A 17 1017 1017 HOH HOH . I 3 HOH A 18 1018 1018 HOH HOH . I 3 HOH A 19 1019 1019 HOH HOH . I 3 HOH A 20 1020 1020 HOH HOH . I 3 HOH A 21 1021 1021 HOH HOH . I 3 HOH A 22 1022 1022 HOH HOH . I 3 HOH A 23 1023 1023 HOH HOH . I 3 HOH A 24 1024 1024 HOH HOH . I 3 HOH A 25 1025 1025 HOH HOH . I 3 HOH A 26 1060 1060 HOH HOH . I 3 HOH A 27 1075 1075 HOH HOH . I 3 HOH A 28 1077 1077 HOH HOH . I 3 HOH A 29 1078 1078 HOH HOH . I 3 HOH A 30 1079 1079 HOH HOH . I 3 HOH A 31 1080 1080 HOH HOH . I 3 HOH A 32 1081 1081 HOH HOH . J 3 HOH B 1 1026 1026 HOH HOH . J 3 HOH B 2 1027 1027 HOH HOH . J 3 HOH B 3 1028 1028 HOH HOH . J 3 HOH B 4 1029 1029 HOH HOH . J 3 HOH B 5 1030 1030 HOH HOH . J 3 HOH B 6 1031 1031 HOH HOH . J 3 HOH B 7 1032 1032 HOH HOH . J 3 HOH B 8 1033 1033 HOH HOH . J 3 HOH B 9 1034 1034 HOH HOH . J 3 HOH B 10 1035 1035 HOH HOH . J 3 HOH B 11 1036 1036 HOH HOH . J 3 HOH B 12 1037 1037 HOH HOH . J 3 HOH B 13 1038 1038 HOH HOH . J 3 HOH B 14 1039 1039 HOH HOH . J 3 HOH B 15 1040 1040 HOH HOH . J 3 HOH B 16 1041 1041 HOH HOH . J 3 HOH B 17 1042 1042 HOH HOH . J 3 HOH B 18 1043 1043 HOH HOH . J 3 HOH B 19 1044 1044 HOH HOH . J 3 HOH B 20 1073 1073 HOH HOH . J 3 HOH B 21 1074 1074 HOH HOH . J 3 HOH B 22 1076 1076 HOH HOH . J 3 HOH B 23 1088 1088 HOH HOH . K 3 HOH C 1 1045 1045 HOH HOH . K 3 HOH C 2 1046 1046 HOH HOH . K 3 HOH C 3 1047 1047 HOH HOH . K 3 HOH C 4 1048 1048 HOH HOH . K 3 HOH C 5 1049 1049 HOH HOH . K 3 HOH C 6 1050 1050 HOH HOH . K 3 HOH C 7 1051 1051 HOH HOH . K 3 HOH C 8 1052 1052 HOH HOH . K 3 HOH C 9 1053 1053 HOH HOH . K 3 HOH C 10 1054 1054 HOH HOH . K 3 HOH C 11 1055 1055 HOH HOH . K 3 HOH C 12 1056 1056 HOH HOH . K 3 HOH C 13 1057 1057 HOH HOH . K 3 HOH C 14 1058 1058 HOH HOH . K 3 HOH C 15 1059 1059 HOH HOH . K 3 HOH C 16 1064 1064 HOH HOH . K 3 HOH C 17 1082 1082 HOH HOH . K 3 HOH C 18 1083 1083 HOH HOH . K 3 HOH C 19 1084 1084 HOH HOH . L 3 HOH D 1 1061 1061 HOH HOH . L 3 HOH D 2 1062 1062 HOH HOH . L 3 HOH D 3 1063 1063 HOH HOH . L 3 HOH D 4 1065 1065 HOH HOH . L 3 HOH D 5 1066 1066 HOH HOH . L 3 HOH D 6 1067 1067 HOH HOH . L 3 HOH D 7 1068 1068 HOH HOH . L 3 HOH D 8 1069 1069 HOH HOH . L 3 HOH D 9 1070 1070 HOH HOH . L 3 HOH D 10 1071 1071 HOH HOH . L 3 HOH D 11 1072 1072 HOH HOH . L 3 HOH D 12 1085 1085 HOH HOH . L 3 HOH D 13 1086 1086 HOH HOH . L 3 HOH D 14 1087 1087 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.813 _atom_site.Cartn_y -2.216 _atom_site.Cartn_z 55.075 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2000 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #