data_2NZ0 # _model_server_result.job_id uu0shb2cFrofeuwY7B1oMQ _model_server_result.datetime_utc '2025-03-06 08:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 2NZ0 # _exptl.entry_id 2NZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NZ0 _cell.length_a 112.186 _cell.length_b 112.213 _cell.length_c 141.051 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PQS hexadecameric 16 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -112.213 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -112.213 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 99 A ASP 135 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.248 ? metalc ? metalc2 A ND2 ASN 101 A ASN 137 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc3 A OD1 ASN 101 A ASN 137 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc4 A O TYR 105 A TYR 141 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 A OE1 GLU 110 A GLU 146 1_555 E CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc6 A OD1 ASP 151 A ASP 187 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc7 A O ILE 153 A ILE 189 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc8 A OE1 GLU 158 A GLU 194 1_555 F CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc9 B ND1 HIS 99 B HIS 104 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc10 B SG CYS 105 B CYS 110 2_545 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc11 B SG CYS 126 B CYS 131 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 B SG CYS 127 B CYS 132 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc13 G ZN ZN . B ZN 301 1_555 D SG CYS 105 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc14 C OD1 ASP 99 C ASP 135 1_555 H CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc15 C OD1 ASN 101 C ASN 137 1_555 H CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc16 C O TYR 105 C TYR 141 1_555 H CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc17 C OE2 GLU 110 C GLU 146 1_555 H CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.277 ? metalc ? metalc18 C OE1 GLU 110 C GLU 146 1_555 H CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc19 C OD1 ASN 149 C ASN 185 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.303 ? metalc ? metalc20 C OD1 ASP 151 C ASP 187 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc21 C OD2 ASP 151 C ASP 187 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.295 ? metalc ? metalc22 C O ILE 153 C ILE 189 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc23 C OE2 GLU 158 C GLU 194 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc24 C OE1 GLU 158 C GLU 194 1_555 I CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc25 D ND1 HIS 99 D HIS 104 1_555 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc26 D SG CYS 126 D CYS 131 1_555 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc27 D SG CYS 127 D CYS 132 1_555 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NZ0 _atom_sites.fract_transf_matrix[1][1] 0.008914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 301 301 CA CA . F 3 CA A 1 302 302 CA CA . G 4 ZN B 1 301 301 ZN ZN . H 3 CA C 1 301 301 CA CA . I 3 CA C 1 302 302 CA CA . J 4 ZN D 1 301 301 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -45.584 _atom_site.Cartn_y -6.957 _atom_site.Cartn_z -16.304 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 168.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #