data_2NZ6 # _model_server_result.job_id W3b6m81v3dOOxjeBSL4mBg _model_server_result.datetime_utc '2024-11-28 13:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 2NZ6 # _exptl.entry_id 2NZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NZ6 _cell.length_a 88.521 _cell.length_b 88.521 _cell.length_c 118.95 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.2605 76.661435 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.2605 76.661435 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 2 A HIS -21 1_555 D NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A NE2 HIS 2 A HIS -21 2_665 E NI NI . A NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 A N HIS 3 A HIS -20 1_555 D NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 A ND1 HIS 3 A HIS -20 1_555 D NI NI . A NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc5 A NE2 HIS 3 A HIS -20 1_555 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 A NE2 HIS 3 A HIS -20 2_665 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 A NE2 HIS 3 A HIS -20 3_565 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 A NE2 HIS 4 A HIS -19 1_555 E NI NI . A NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc9 A NE2 HIS 5 A HIS -18 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc10 A NE2 HIS 5 A HIS -18 2_665 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 A NE2 HIS 5 A HIS -18 3_565 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc12 A NE2 HIS 6 A HIS -17 1_555 E NI NI . A NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc13 A NE2 HIS 7 A HIS -16 1_555 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc14 A NE2 HIS 7 A HIS -16 2_665 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc15 A NE2 HIS 7 A HIS -16 3_565 B NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc16 I O HOH . A HOH 96 1_555 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc17 I O HOH . A HOH 96 2_665 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc18 I O HOH . A HOH 96 3_565 F NI NI . A NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc19 C NI NI . A NI 203 1_555 A NE2 HIS 211 A HIS 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc20 E NI NI . A NI 205 1_555 A NZ LYS 111 A LYS 1106 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc21 E NI NI . A NI 205 1_555 A NE2 HIS 282 A HIS 1277 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NZ6 _atom_sites.fract_transf_matrix[1][1] 0.011297 _atom_sites.fract_transf_matrix[1][2] 0.006522 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 201 201 NI NI . C 2 NI A 1 203 203 NI NI . D 2 NI A 1 204 204 NI NI . E 2 NI A 1 205 205 NI NI . F 2 NI A 1 206 206 NI NI . G 3 PO4 A 1 207 207 PO4 PO4 . H 4 CL A 1 208 208 CL CL . I 5 HOH A 1 2 2 HOH HOH . I 5 HOH A 2 4 4 HOH HOH . I 5 HOH A 3 5 5 HOH HOH . I 5 HOH A 4 7 7 HOH HOH . I 5 HOH A 5 8 8 HOH HOH . I 5 HOH A 6 9 9 HOH HOH . I 5 HOH A 7 10 10 HOH HOH . I 5 HOH A 8 11 11 HOH HOH . I 5 HOH A 9 12 12 HOH HOH . I 5 HOH A 10 14 14 HOH HOH . I 5 HOH A 11 15 15 HOH HOH . I 5 HOH A 12 16 16 HOH HOH . I 5 HOH A 13 17 17 HOH HOH . I 5 HOH A 14 18 18 HOH HOH . I 5 HOH A 15 20 20 HOH HOH . I 5 HOH A 16 21 21 HOH HOH . I 5 HOH A 17 22 22 HOH HOH . I 5 HOH A 18 23 23 HOH HOH . I 5 HOH A 19 24 24 HOH HOH . I 5 HOH A 20 25 25 HOH HOH . I 5 HOH A 21 26 26 HOH HOH . I 5 HOH A 22 28 28 HOH HOH . I 5 HOH A 23 29 29 HOH HOH . I 5 HOH A 24 31 31 HOH HOH . I 5 HOH A 25 32 32 HOH HOH . I 5 HOH A 26 33 33 HOH HOH . I 5 HOH A 27 34 34 HOH HOH . I 5 HOH A 28 35 35 HOH HOH . I 5 HOH A 29 36 36 HOH HOH . I 5 HOH A 30 37 37 HOH HOH . I 5 HOH A 31 38 38 HOH HOH . I 5 HOH A 32 39 39 HOH HOH . I 5 HOH A 33 40 40 HOH HOH . I 5 HOH A 34 41 41 HOH HOH . I 5 HOH A 35 43 43 HOH HOH . I 5 HOH A 36 44 44 HOH HOH . I 5 HOH A 37 45 45 HOH HOH . I 5 HOH A 38 46 46 HOH HOH . I 5 HOH A 39 47 47 HOH HOH . I 5 HOH A 40 48 48 HOH HOH . I 5 HOH A 41 49 49 HOH HOH . I 5 HOH A 42 51 51 HOH HOH . I 5 HOH A 43 53 53 HOH HOH . I 5 HOH A 44 54 54 HOH HOH . I 5 HOH A 45 55 55 HOH HOH . I 5 HOH A 46 56 56 HOH HOH . I 5 HOH A 47 57 57 HOH HOH . I 5 HOH A 48 58 58 HOH HOH . I 5 HOH A 49 59 59 HOH HOH . I 5 HOH A 50 60 60 HOH HOH . I 5 HOH A 51 61 61 HOH HOH . I 5 HOH A 52 63 63 HOH HOH . I 5 HOH A 53 65 65 HOH HOH . I 5 HOH A 54 66 66 HOH HOH . I 5 HOH A 55 67 67 HOH HOH . I 5 HOH A 56 68 68 HOH HOH . I 5 HOH A 57 69 69 HOH HOH . I 5 HOH A 58 70 70 HOH HOH . I 5 HOH A 59 71 71 HOH HOH . I 5 HOH A 60 72 72 HOH HOH . I 5 HOH A 61 73 73 HOH HOH . I 5 HOH A 62 74 74 HOH HOH . I 5 HOH A 63 75 75 HOH HOH . I 5 HOH A 64 76 76 HOH HOH . I 5 HOH A 65 77 77 HOH HOH . I 5 HOH A 66 78 78 HOH HOH . I 5 HOH A 67 79 79 HOH HOH . I 5 HOH A 68 80 80 HOH HOH . I 5 HOH A 69 81 81 HOH HOH . I 5 HOH A 70 82 82 HOH HOH . I 5 HOH A 71 83 83 HOH HOH . I 5 HOH A 72 84 84 HOH HOH . I 5 HOH A 73 85 85 HOH HOH . I 5 HOH A 74 86 86 HOH HOH . I 5 HOH A 75 87 87 HOH HOH . I 5 HOH A 76 88 88 HOH HOH . I 5 HOH A 77 89 89 HOH HOH . I 5 HOH A 78 90 90 HOH HOH . I 5 HOH A 79 91 91 HOH HOH . I 5 HOH A 80 92 92 HOH HOH . I 5 HOH A 81 93 93 HOH HOH . I 5 HOH A 82 94 94 HOH HOH . I 5 HOH A 83 95 95 HOH HOH . I 5 HOH A 84 96 96 HOH HOH . I 5 HOH A 85 97 97 HOH HOH . I 5 HOH A 86 98 98 HOH HOH . I 5 HOH A 87 99 99 HOH HOH . I 5 HOH A 88 100 100 HOH HOH . I 5 HOH A 89 101 101 HOH HOH . I 5 HOH A 90 102 102 HOH HOH . I 5 HOH A 91 103 103 HOH HOH . I 5 HOH A 92 104 104 HOH HOH . I 5 HOH A 93 105 105 HOH HOH . I 5 HOH A 94 106 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.029 _atom_site.Cartn_y 55.158 _atom_site.Cartn_z -15.884 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #