data_2NZ9 # _model_server_result.job_id xFYoy2E7IFYPupMJ0kFPqg _model_server_result.datetime_utc '2024-12-21 15:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1298}' # _entry.id 2NZ9 # _exptl.entry_id 2NZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.18 _cell.angle_gamma 90 _cell.entry_id 2NZ9 _cell.length_a 97.965 _cell.length_b 197.596 _cell.length_c 146.105 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H 1 1 B,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 429 A CYS 430 1_555 A SG CYS 453 A CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 1234 A CYS 1235 1_555 A SG CYS 1279 A CYS 1280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? disulf ? disulf3 B SG CYS 429 B CYS 430 1_555 B SG CYS 453 B CYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 C SG CYS 23 C CYS 23 1_555 C SG CYS 92 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 C SG CYS 138 C CYS 138 1_555 C SG CYS 198 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? disulf ? disulf6 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 D SG CYS 145 D CYS 145 1_555 D SG CYS 201 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 E SG CYS 23 E CYS 23 1_555 E SG CYS 92 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 E SG CYS 138 E CYS 138 1_555 E SG CYS 198 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf10 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf11 F SG CYS 145 F CYS 145 1_555 F SG CYS 201 F CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 G ZN ZN . A ZN 1 1_555 A NE2 HIS 222 A HIS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 G ZN ZN . A ZN 1 1_555 A NE2 HIS 226 A HIS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 G ZN ZN . A ZN 1 1_555 A OE1 GLU 261 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 G ZN ZN . A ZN 1 1_555 A OE2 GLU 261 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 A OE2 GLU 346 A GLU 347 1_555 H CA CA . A CA 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc6 B NE2 HIS 222 B HIS 223 1_555 I ZN ZN . B ZN 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc7 B NE2 HIS 226 B HIS 227 1_555 I ZN ZN . B ZN 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 B OE2 GLU 261 B GLU 262 1_555 I ZN ZN . B ZN 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc9 B OE1 GLU 261 B GLU 262 1_555 I ZN ZN . B ZN 1297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc10 B OE1 GLU 278 B GLU 279 1_555 J CA CA . B CA 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.311 ? metalc ? metalc11 B NZ LYS 710 B LYS 711 1_555 J CA CA . B CA 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.372 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2NZ9 _atom_sites.fract_transf_matrix[1][1] 0.010208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN A 1 1 1 ZN ZN . H 5 CA A 1 1297 3 CA CA . I 4 ZN B 1 1297 2 ZN ZN . J 5 CA B 1 1298 4 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 21.81 _atom_site.Cartn_y 47.163 _atom_site.Cartn_z 77.695 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 110.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1298 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #