data_2NZL # _model_server_result.job_id JSJekxQfRr68QlCwdHupmg _model_server_result.datetime_utc '2024-11-22 12:47:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nzl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2NZL # _exptl.entry_id 2NZL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NZL _cell.length_a 97.294 _cell.length_b 97.294 _cell.length_c 79.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2NZL _atom_sites.fract_transf_matrix[1][1] 0.010278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 501 501 FMN FMN . C 3 GLV A 1 601 601 GLV GLV . D 4 HOH A 1 602 1 HOH HOH . D 4 HOH A 2 603 2 HOH HOH . D 4 HOH A 3 604 3 HOH HOH . D 4 HOH A 4 605 4 HOH HOH . D 4 HOH A 5 606 5 HOH HOH . D 4 HOH A 6 607 6 HOH HOH . D 4 HOH A 7 608 7 HOH HOH . D 4 HOH A 8 609 8 HOH HOH . D 4 HOH A 9 610 9 HOH HOH . D 4 HOH A 10 611 10 HOH HOH . D 4 HOH A 11 612 11 HOH HOH . D 4 HOH A 12 613 12 HOH HOH . D 4 HOH A 13 614 13 HOH HOH . D 4 HOH A 14 615 14 HOH HOH . D 4 HOH A 15 616 15 HOH HOH . D 4 HOH A 16 617 16 HOH HOH . D 4 HOH A 17 618 17 HOH HOH . D 4 HOH A 18 619 18 HOH HOH . D 4 HOH A 19 620 19 HOH HOH . D 4 HOH A 20 621 20 HOH HOH . D 4 HOH A 21 622 21 HOH HOH . D 4 HOH A 22 623 22 HOH HOH . D 4 HOH A 23 624 23 HOH HOH . D 4 HOH A 24 625 24 HOH HOH . D 4 HOH A 25 626 25 HOH HOH . D 4 HOH A 26 627 26 HOH HOH . D 4 HOH A 27 628 27 HOH HOH . D 4 HOH A 28 629 28 HOH HOH . D 4 HOH A 29 630 29 HOH HOH . D 4 HOH A 30 631 30 HOH HOH . D 4 HOH A 31 632 31 HOH HOH . D 4 HOH A 32 633 32 HOH HOH . D 4 HOH A 33 634 33 HOH HOH . D 4 HOH A 34 635 34 HOH HOH . D 4 HOH A 35 636 35 HOH HOH . D 4 HOH A 36 637 36 HOH HOH . D 4 HOH A 37 638 37 HOH HOH . D 4 HOH A 38 639 38 HOH HOH . D 4 HOH A 39 640 39 HOH HOH . D 4 HOH A 40 641 40 HOH HOH . D 4 HOH A 41 642 41 HOH HOH . D 4 HOH A 42 643 42 HOH HOH . D 4 HOH A 43 644 43 HOH HOH . D 4 HOH A 44 645 44 HOH HOH . D 4 HOH A 45 646 45 HOH HOH . D 4 HOH A 46 647 46 HOH HOH . D 4 HOH A 47 648 47 HOH HOH . D 4 HOH A 48 649 48 HOH HOH . D 4 HOH A 49 650 49 HOH HOH . D 4 HOH A 50 651 50 HOH HOH . D 4 HOH A 51 652 51 HOH HOH . D 4 HOH A 52 653 52 HOH HOH . D 4 HOH A 53 654 53 HOH HOH . D 4 HOH A 54 655 54 HOH HOH . D 4 HOH A 55 656 55 HOH HOH . D 4 HOH A 56 657 56 HOH HOH . D 4 HOH A 57 658 57 HOH HOH . D 4 HOH A 58 659 58 HOH HOH . D 4 HOH A 59 660 59 HOH HOH . D 4 HOH A 60 661 60 HOH HOH . D 4 HOH A 61 662 61 HOH HOH . D 4 HOH A 62 663 62 HOH HOH . D 4 HOH A 63 664 63 HOH HOH . D 4 HOH A 64 665 64 HOH HOH . D 4 HOH A 65 666 65 HOH HOH . D 4 HOH A 66 667 66 HOH HOH . D 4 HOH A 67 668 67 HOH HOH . D 4 HOH A 68 669 68 HOH HOH . D 4 HOH A 69 670 69 HOH HOH . D 4 HOH A 70 671 70 HOH HOH . D 4 HOH A 71 672 71 HOH HOH . D 4 HOH A 72 673 72 HOH HOH . D 4 HOH A 73 674 73 HOH HOH . D 4 HOH A 74 675 74 HOH HOH . D 4 HOH A 75 676 75 HOH HOH . D 4 HOH A 76 677 76 HOH HOH . D 4 HOH A 77 678 77 HOH HOH . D 4 HOH A 78 679 78 HOH HOH . D 4 HOH A 79 680 79 HOH HOH . D 4 HOH A 80 681 80 HOH HOH . D 4 HOH A 81 682 81 HOH HOH . D 4 HOH A 82 683 82 HOH HOH . D 4 HOH A 83 684 83 HOH HOH . D 4 HOH A 84 685 84 HOH HOH . D 4 HOH A 85 686 85 HOH HOH . D 4 HOH A 86 687 86 HOH HOH . D 4 HOH A 87 688 87 HOH HOH . D 4 HOH A 88 689 88 HOH HOH . D 4 HOH A 89 690 89 HOH HOH . D 4 HOH A 90 691 90 HOH HOH . D 4 HOH A 91 692 91 HOH HOH . D 4 HOH A 92 693 92 HOH HOH . D 4 HOH A 93 694 93 HOH HOH . D 4 HOH A 94 695 94 HOH HOH . D 4 HOH A 95 696 95 HOH HOH . D 4 HOH A 96 697 96 HOH HOH . D 4 HOH A 97 698 97 HOH HOH . D 4 HOH A 98 699 98 HOH HOH . D 4 HOH A 99 700 99 HOH HOH . D 4 HOH A 100 701 100 HOH HOH . D 4 HOH A 101 702 101 HOH HOH . D 4 HOH A 102 703 102 HOH HOH . D 4 HOH A 103 704 103 HOH HOH . D 4 HOH A 104 705 104 HOH HOH . D 4 HOH A 105 706 105 HOH HOH . D 4 HOH A 106 707 106 HOH HOH . D 4 HOH A 107 708 107 HOH HOH . D 4 HOH A 108 709 108 HOH HOH . D 4 HOH A 109 710 109 HOH HOH . D 4 HOH A 110 711 110 HOH HOH . D 4 HOH A 111 712 111 HOH HOH . D 4 HOH A 112 713 112 HOH HOH . D 4 HOH A 113 714 113 HOH HOH . D 4 HOH A 114 715 114 HOH HOH . D 4 HOH A 115 716 115 HOH HOH . D 4 HOH A 116 717 116 HOH HOH . D 4 HOH A 117 718 117 HOH HOH . D 4 HOH A 118 719 118 HOH HOH . D 4 HOH A 119 720 119 HOH HOH . D 4 HOH A 120 721 120 HOH HOH . D 4 HOH A 121 722 121 HOH HOH . D 4 HOH A 122 723 122 HOH HOH . D 4 HOH A 123 724 123 HOH HOH . D 4 HOH A 124 725 124 HOH HOH . D 4 HOH A 125 726 125 HOH HOH . D 4 HOH A 126 727 126 HOH HOH . D 4 HOH A 127 728 127 HOH HOH . D 4 HOH A 128 729 128 HOH HOH . D 4 HOH A 129 730 129 HOH HOH . D 4 HOH A 130 731 130 HOH HOH . D 4 HOH A 131 732 131 HOH HOH . D 4 HOH A 132 733 132 HOH HOH . D 4 HOH A 133 734 133 HOH HOH . D 4 HOH A 134 735 134 HOH HOH . D 4 HOH A 135 736 135 HOH HOH . D 4 HOH A 136 737 136 HOH HOH . D 4 HOH A 137 738 137 HOH HOH . D 4 HOH A 138 739 138 HOH HOH . D 4 HOH A 139 740 139 HOH HOH . D 4 HOH A 140 741 140 HOH HOH . D 4 HOH A 141 742 141 HOH HOH . D 4 HOH A 142 743 142 HOH HOH . D 4 HOH A 143 744 143 HOH HOH . D 4 HOH A 144 745 144 HOH HOH . D 4 HOH A 145 746 145 HOH HOH . D 4 HOH A 146 747 146 HOH HOH . D 4 HOH A 147 748 147 HOH HOH . D 4 HOH A 148 749 148 HOH HOH . D 4 HOH A 149 750 149 HOH HOH . D 4 HOH A 150 751 150 HOH HOH . D 4 HOH A 151 752 151 HOH HOH . D 4 HOH A 152 753 152 HOH HOH . D 4 HOH A 153 754 153 HOH HOH . D 4 HOH A 154 755 154 HOH HOH . D 4 HOH A 155 756 155 HOH HOH . D 4 HOH A 156 757 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 8.895 30.039 18.036 1 14.4 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . B 2 8.947 31.315 17.672 1 15.95 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . B 2 8.938 31.568 16.465 1 15.45 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . B 2 9.001 32.276 18.612 1 16.14 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . B 2 9.014 32.007 19.929 1 17.5 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . B 2 9.065 32.887 20.827 1 19.56 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . B 2 8.964 30.681 20.312 1 14.38 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . B 2 8.97 30.365 21.636 1 17.29 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . B 2 8.923 29.057 21.982 1 18.77 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . B 2 8.93 28.681 23.329 1 21.42 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . B 2 8.884 27.343 23.732 1 19.95 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . B 2 8.901 27.119 25.194 1 17.9 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . B 2 8.833 26.354 22.838 1 16.38 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . B 2 8.78 24.878 23.202 1 25.88 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . B 2 8.829 26.767 21.529 1 16.4 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . B 2 8.868 28.062 21.057 1 17.51 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . B 2 8.856 28.351 19.704 1 15.07 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . B 2 8.909 29.708 19.339 1 15.37 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . B 2 8.808 27.269 18.674 1 15.3 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . B 2 10.354 26.924 18.541 1 13.95 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . B 2 11.08 27.974 17.794 1 14.38 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . B 2 10.572 25.643 17.785 1 13.57 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . B 2 9.833 25.683 16.549 1 12.14 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . B 2 10.223 24.393 18.599 1 11.51 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . B 2 10.64 24.494 19.956 1 11.49 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . B 2 10.948 23.207 18.001 1 12.43 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . B 2 10.571 21.974 18.582 1 11.69 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . B 2 11.353 21.279 19.816 1 10.86 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . B 2 10.737 19.876 19.773 1 11.65 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . B 2 11.022 22.047 21.093 1 9.91 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . B 2 12.834 21.337 19.495 1 11.82 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #