data_2NZO # _model_server_result.job_id '_ZTn31pYjIP2wiKnHz9_aQ' _model_server_result.datetime_utc '2024-12-04 02:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 2NZO # _exptl.entry_id 2NZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NZO _cell.length_a 148.432 _cell.length_b 148.432 _cell.length_c 54.054 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,K,L 1 1 C,D,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2NZO _atom_sites.fract_transf_matrix[1][1] 0.006737 _atom_sites.fract_transf_matrix[1][2] 0.00389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 302 302 GOL GOL . F 2 GOL A 1 305 305 GOL GOL . G 2 GOL A 1 306 306 GOL GOL . H 2 GOL B 1 301 301 GOL GOL . I 2 GOL B 1 304 304 GOL GOL . J 2 GOL D 1 303 303 GOL GOL . K 3 HOH A 1 307 1 HOH HOH . K 3 HOH A 2 308 2 HOH HOH . K 3 HOH A 3 309 4 HOH HOH . K 3 HOH A 4 310 12 HOH HOH . K 3 HOH A 5 311 16 HOH HOH . K 3 HOH A 6 312 20 HOH HOH . K 3 HOH A 7 313 22 HOH HOH . K 3 HOH A 8 314 24 HOH HOH . K 3 HOH A 9 315 27 HOH HOH . K 3 HOH A 10 316 28 HOH HOH . K 3 HOH A 11 317 33 HOH HOH . K 3 HOH A 12 318 36 HOH HOH . K 3 HOH A 13 319 39 HOH HOH . K 3 HOH A 14 320 44 HOH HOH . K 3 HOH A 15 321 45 HOH HOH . K 3 HOH A 16 322 47 HOH HOH . K 3 HOH A 17 323 48 HOH HOH . K 3 HOH A 18 324 50 HOH HOH . K 3 HOH A 19 325 52 HOH HOH . K 3 HOH A 20 326 59 HOH HOH . K 3 HOH A 21 327 61 HOH HOH . K 3 HOH A 22 328 63 HOH HOH . K 3 HOH A 23 329 65 HOH HOH . K 3 HOH A 24 330 66 HOH HOH . K 3 HOH A 25 331 68 HOH HOH . K 3 HOH A 26 332 69 HOH HOH . K 3 HOH A 27 333 70 HOH HOH . K 3 HOH A 28 334 72 HOH HOH . K 3 HOH A 29 335 75 HOH HOH . K 3 HOH A 30 336 76 HOH HOH . K 3 HOH A 31 337 85 HOH HOH . K 3 HOH A 32 338 86 HOH HOH . K 3 HOH A 33 339 91 HOH HOH . K 3 HOH A 34 340 96 HOH HOH . K 3 HOH A 35 341 101 HOH HOH . K 3 HOH A 36 342 102 HOH HOH . K 3 HOH A 37 343 105 HOH HOH . K 3 HOH A 38 344 108 HOH HOH . K 3 HOH A 39 345 109 HOH HOH . K 3 HOH A 40 346 111 HOH HOH . K 3 HOH A 41 347 114 HOH HOH . K 3 HOH A 42 348 115 HOH HOH . K 3 HOH A 43 349 119 HOH HOH . K 3 HOH A 44 350 123 HOH HOH . K 3 HOH A 45 351 125 HOH HOH . K 3 HOH A 46 352 129 HOH HOH . K 3 HOH A 47 353 132 HOH HOH . K 3 HOH A 48 354 134 HOH HOH . K 3 HOH A 49 355 135 HOH HOH . K 3 HOH A 50 356 136 HOH HOH . K 3 HOH A 51 357 137 HOH HOH . K 3 HOH A 52 358 138 HOH HOH . K 3 HOH A 53 359 139 HOH HOH . K 3 HOH A 54 360 141 HOH HOH . K 3 HOH A 55 361 142 HOH HOH . K 3 HOH A 56 362 143 HOH HOH . K 3 HOH A 57 363 144 HOH HOH . K 3 HOH A 58 364 145 HOH HOH . K 3 HOH A 59 365 146 HOH HOH . K 3 HOH A 60 366 147 HOH HOH . K 3 HOH A 61 367 148 HOH HOH . K 3 HOH A 62 368 149 HOH HOH . K 3 HOH A 63 369 160 HOH HOH . K 3 HOH A 64 370 167 HOH HOH . K 3 HOH A 65 371 168 HOH HOH . K 3 HOH A 66 372 186 HOH HOH . K 3 HOH A 67 373 187 HOH HOH . K 3 HOH A 68 374 189 HOH HOH . K 3 HOH A 69 375 195 HOH HOH . K 3 HOH A 70 376 196 HOH HOH . K 3 HOH A 71 377 197 HOH HOH . K 3 HOH A 72 378 198 HOH HOH . K 3 HOH A 73 379 204 HOH HOH . K 3 HOH A 74 380 214 HOH HOH . K 3 HOH A 75 381 215 HOH HOH . K 3 HOH A 76 382 216 HOH HOH . K 3 HOH A 77 383 218 HOH HOH . K 3 HOH A 78 384 224 HOH HOH . K 3 HOH A 79 385 225 HOH HOH . K 3 HOH A 80 386 227 HOH HOH . K 3 HOH A 81 387 236 HOH HOH . K 3 HOH A 82 388 253 HOH HOH . K 3 HOH A 83 389 263 HOH HOH . K 3 HOH A 84 390 266 HOH HOH . K 3 HOH A 85 391 268 HOH HOH . K 3 HOH A 86 392 269 HOH HOH . K 3 HOH A 87 393 270 HOH HOH . K 3 HOH A 88 394 273 HOH HOH . K 3 HOH A 89 395 278 HOH HOH . K 3 HOH A 90 396 279 HOH HOH . K 3 HOH A 91 397 281 HOH HOH . L 3 HOH B 1 305 3 HOH HOH . L 3 HOH B 2 306 5 HOH HOH . L 3 HOH B 3 307 6 HOH HOH . L 3 HOH B 4 308 8 HOH HOH . L 3 HOH B 5 309 9 HOH HOH . L 3 HOH B 6 310 10 HOH HOH . L 3 HOH B 7 311 11 HOH HOH . L 3 HOH B 8 312 13 HOH HOH . L 3 HOH B 9 313 14 HOH HOH . L 3 HOH B 10 314 15 HOH HOH . L 3 HOH B 11 315 17 HOH HOH . L 3 HOH B 12 316 19 HOH HOH . L 3 HOH B 13 317 21 HOH HOH . L 3 HOH B 14 318 23 HOH HOH . L 3 HOH B 15 319 25 HOH HOH . L 3 HOH B 16 320 29 HOH HOH . L 3 HOH B 17 321 31 HOH HOH . L 3 HOH B 18 322 32 HOH HOH . L 3 HOH B 19 323 34 HOH HOH . L 3 HOH B 20 324 35 HOH HOH . L 3 HOH B 21 325 38 HOH HOH . L 3 HOH B 22 326 42 HOH HOH . L 3 HOH B 23 327 43 HOH HOH . L 3 HOH B 24 328 46 HOH HOH . L 3 HOH B 25 329 49 HOH HOH . L 3 HOH B 26 330 53 HOH HOH . L 3 HOH B 27 331 54 HOH HOH . L 3 HOH B 28 332 56 HOH HOH . L 3 HOH B 29 333 60 HOH HOH . L 3 HOH B 30 334 62 HOH HOH . L 3 HOH B 31 335 64 HOH HOH . L 3 HOH B 32 336 67 HOH HOH . L 3 HOH B 33 337 71 HOH HOH . L 3 HOH B 34 338 79 HOH HOH . L 3 HOH B 35 339 80 HOH HOH . L 3 HOH B 36 340 81 HOH HOH . L 3 HOH B 37 341 83 HOH HOH . L 3 HOH B 38 342 84 HOH HOH . L 3 HOH B 39 343 89 HOH HOH . L 3 HOH B 40 344 93 HOH HOH . L 3 HOH B 41 345 95 HOH HOH . L 3 HOH B 42 346 98 HOH HOH . L 3 HOH B 43 347 99 HOH HOH . L 3 HOH B 44 348 100 HOH HOH . L 3 HOH B 45 349 104 HOH HOH . L 3 HOH B 46 350 106 HOH HOH . L 3 HOH B 47 351 112 HOH HOH . L 3 HOH B 48 352 116 HOH HOH . L 3 HOH B 49 353 118 HOH HOH . L 3 HOH B 50 354 120 HOH HOH . L 3 HOH B 51 355 122 HOH HOH . L 3 HOH B 52 356 127 HOH HOH . L 3 HOH B 53 357 128 HOH HOH . L 3 HOH B 54 358 130 HOH HOH . L 3 HOH B 55 359 131 HOH HOH . L 3 HOH B 56 360 133 HOH HOH . L 3 HOH B 57 361 140 HOH HOH . L 3 HOH B 58 362 150 HOH HOH . L 3 HOH B 59 363 151 HOH HOH . L 3 HOH B 60 364 152 HOH HOH . L 3 HOH B 61 365 153 HOH HOH . L 3 HOH B 62 366 154 HOH HOH . L 3 HOH B 63 367 155 HOH HOH . L 3 HOH B 64 368 156 HOH HOH . L 3 HOH B 65 369 157 HOH HOH . L 3 HOH B 66 370 158 HOH HOH . L 3 HOH B 67 371 159 HOH HOH . L 3 HOH B 68 372 161 HOH HOH . L 3 HOH B 69 373 166 HOH HOH . L 3 HOH B 70 374 169 HOH HOH . L 3 HOH B 71 375 170 HOH HOH . L 3 HOH B 72 376 171 HOH HOH . L 3 HOH B 73 377 172 HOH HOH . L 3 HOH B 74 378 173 HOH HOH . L 3 HOH B 75 379 177 HOH HOH . L 3 HOH B 76 380 178 HOH HOH . L 3 HOH B 77 381 179 HOH HOH . L 3 HOH B 78 382 180 HOH HOH . L 3 HOH B 79 383 181 HOH HOH . L 3 HOH B 80 384 182 HOH HOH . L 3 HOH B 81 385 183 HOH HOH . L 3 HOH B 82 386 191 HOH HOH . L 3 HOH B 83 387 192 HOH HOH . L 3 HOH B 84 388 194 HOH HOH . L 3 HOH B 85 389 199 HOH HOH . L 3 HOH B 86 390 203 HOH HOH . L 3 HOH B 87 391 206 HOH HOH . L 3 HOH B 88 392 207 HOH HOH . L 3 HOH B 89 393 208 HOH HOH . L 3 HOH B 90 394 209 HOH HOH . L 3 HOH B 91 395 221 HOH HOH . L 3 HOH B 92 396 222 HOH HOH . L 3 HOH B 93 397 231 HOH HOH . L 3 HOH B 94 398 232 HOH HOH . L 3 HOH B 95 399 234 HOH HOH . L 3 HOH B 96 400 237 HOH HOH . L 3 HOH B 97 401 243 HOH HOH . L 3 HOH B 98 402 248 HOH HOH . L 3 HOH B 99 403 249 HOH HOH . L 3 HOH B 100 404 255 HOH HOH . L 3 HOH B 101 405 257 HOH HOH . L 3 HOH B 102 406 259 HOH HOH . L 3 HOH B 103 407 261 HOH HOH . L 3 HOH B 104 408 265 HOH HOH . L 3 HOH B 105 409 272 HOH HOH . L 3 HOH B 106 410 276 HOH HOH . L 3 HOH B 107 411 280 HOH HOH . L 3 HOH B 108 412 284 HOH HOH . M 3 HOH C 1 111 40 HOH HOH . M 3 HOH C 2 112 57 HOH HOH . M 3 HOH C 3 113 73 HOH HOH . M 3 HOH C 4 114 87 HOH HOH . M 3 HOH C 5 115 103 HOH HOH . M 3 HOH C 6 116 107 HOH HOH . M 3 HOH C 7 117 113 HOH HOH . M 3 HOH C 8 118 162 HOH HOH . M 3 HOH C 9 119 174 HOH HOH . M 3 HOH C 10 120 201 HOH HOH . M 3 HOH C 11 121 202 HOH HOH . M 3 HOH C 12 122 210 HOH HOH . M 3 HOH C 13 123 211 HOH HOH . M 3 HOH C 14 124 212 HOH HOH . M 3 HOH C 15 125 213 HOH HOH . M 3 HOH C 16 126 217 HOH HOH . M 3 HOH C 17 127 229 HOH HOH . M 3 HOH C 18 128 230 HOH HOH . M 3 HOH C 19 129 244 HOH HOH . M 3 HOH C 20 130 245 HOH HOH . M 3 HOH C 21 131 246 HOH HOH . M 3 HOH C 22 132 250 HOH HOH . M 3 HOH C 23 133 254 HOH HOH . M 3 HOH C 24 134 260 HOH HOH . M 3 HOH C 25 135 262 HOH HOH . M 3 HOH C 26 136 264 HOH HOH . M 3 HOH C 27 137 267 HOH HOH . M 3 HOH C 28 138 271 HOH HOH . M 3 HOH C 29 139 275 HOH HOH . M 3 HOH C 30 140 283 HOH HOH . N 3 HOH D 1 304 7 HOH HOH . N 3 HOH D 2 305 18 HOH HOH . N 3 HOH D 3 306 30 HOH HOH . N 3 HOH D 4 307 37 HOH HOH . N 3 HOH D 5 308 51 HOH HOH . N 3 HOH D 6 309 55 HOH HOH . N 3 HOH D 7 310 58 HOH HOH . N 3 HOH D 8 311 74 HOH HOH . N 3 HOH D 9 312 77 HOH HOH . N 3 HOH D 10 313 78 HOH HOH . N 3 HOH D 11 314 82 HOH HOH . N 3 HOH D 12 315 88 HOH HOH . N 3 HOH D 13 316 90 HOH HOH . N 3 HOH D 14 317 92 HOH HOH . N 3 HOH D 15 318 94 HOH HOH . N 3 HOH D 16 319 97 HOH HOH . N 3 HOH D 17 320 110 HOH HOH . N 3 HOH D 18 321 117 HOH HOH . N 3 HOH D 19 322 121 HOH HOH . N 3 HOH D 20 323 124 HOH HOH . N 3 HOH D 21 324 126 HOH HOH . N 3 HOH D 22 325 163 HOH HOH . N 3 HOH D 23 326 164 HOH HOH . N 3 HOH D 24 327 165 HOH HOH . N 3 HOH D 25 328 175 HOH HOH . N 3 HOH D 26 329 176 HOH HOH . N 3 HOH D 27 330 184 HOH HOH . N 3 HOH D 28 331 185 HOH HOH . N 3 HOH D 29 332 188 HOH HOH . N 3 HOH D 30 333 190 HOH HOH . N 3 HOH D 31 334 193 HOH HOH . N 3 HOH D 32 335 200 HOH HOH . N 3 HOH D 33 336 205 HOH HOH . N 3 HOH D 34 337 219 HOH HOH . N 3 HOH D 35 338 220 HOH HOH . N 3 HOH D 36 339 223 HOH HOH . N 3 HOH D 37 340 226 HOH HOH . N 3 HOH D 38 341 228 HOH HOH . N 3 HOH D 39 342 233 HOH HOH . N 3 HOH D 40 343 235 HOH HOH . N 3 HOH D 41 344 238 HOH HOH . N 3 HOH D 42 345 239 HOH HOH . N 3 HOH D 43 346 240 HOH HOH . N 3 HOH D 44 347 241 HOH HOH . N 3 HOH D 45 348 242 HOH HOH . N 3 HOH D 46 349 247 HOH HOH . N 3 HOH D 47 350 251 HOH HOH . N 3 HOH D 48 351 252 HOH HOH . N 3 HOH D 49 352 256 HOH HOH . N 3 HOH D 50 353 258 HOH HOH . N 3 HOH D 51 354 274 HOH HOH . N 3 HOH D 52 355 277 HOH HOH . N 3 HOH D 53 356 282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -57.377 20.982 18.149 1 48.99 ? C1 GOL 303 D 1 HETATM 2 O O1 GOL . . . J 2 -56.908 22.232 17.667 1 47.4 ? O1 GOL 303 D 1 HETATM 3 C C2 GOL . . . J 2 -57.528 19.923 17.052 1 48.25 ? C2 GOL 303 D 1 HETATM 4 O O2 GOL . . . J 2 -56.873 20.238 15.834 1 47.74 ? O2 GOL 303 D 1 HETATM 5 C C3 GOL . . . J 2 -56.974 18.607 17.556 1 47.33 ? C3 GOL 303 D 1 HETATM 6 O O3 GOL . . . J 2 -57.163 17.671 16.519 1 47.35 ? O3 GOL 303 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #