data_2NZU # _model_server_result.job_id utbDUnI6InpDrQmAoTZtaw _model_server_result.datetime_utc '2024-11-25 07:00:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1092}' # _entry.id 2NZU # _exptl.entry_id 2NZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NZU _cell.length_a 68.63 _cell.length_b 68.63 _cell.length_c 230.251 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 68.63 68.63 115.1255 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 45 L LYS 45 1_555 B N SEP 46 L SEP 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B C SEP 46 L SEP 46 1_555 B N ILE 47 L ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BG6 _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BG6 sing 70 n n C1 O1 BG6 sing 71 n n C1 O5 BG6 sing 72 n n C1 H1 BG6 sing 73 n n C2 C3 BG6 sing 74 n n C2 O2 BG6 sing 75 n n C2 H2 BG6 sing 76 n n O1 HO1 BG6 sing 77 n n O5 C5 BG6 sing 78 n n C3 C4 BG6 sing 79 n n C3 O3 BG6 sing 80 n n C3 H3 BG6 sing 81 n n O2 HO2 BG6 sing 82 n n C4 C5 BG6 sing 83 n n C4 O4 BG6 sing 84 n n C4 H4 BG6 sing 85 n n O3 HO3 BG6 sing 86 n n C5 C6 BG6 sing 87 n n C5 H5 BG6 sing 88 n n O4 HO4 BG6 sing 89 n n C6 O6 BG6 sing 90 n n C6 H61 BG6 sing 91 n n C6 H62 BG6 sing 92 n n O6 P BG6 sing 93 n n P O1P BG6 sing 94 n n P O2P BG6 sing 95 n n P O3P BG6 doub 96 n n O1P H1O1 BG6 sing 97 n n O2P H2O2 BG6 sing 98 n n # _pdbx_chem_comp_identifier.comp_id BG6 _pdbx_chem_comp_identifier.identifier b-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2NZU _atom_sites.fract_transf_matrix[1][1] 0.014571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BG6 G 1 1092 1092 BG6 BG6 . D 4 SO4 G 1 1093 246 SO4 SO4 . E 4 SO4 G 1 466 466 SO4 SO4 . F 4 SO4 G 1 945 945 SO4 SO4 . G 4 SO4 G 1 946 946 SO4 SO4 . H 4 SO4 G 1 966 966 SO4 SO4 . I 4 SO4 G 1 977 977 SO4 SO4 . J 4 SO4 G 1 995 995 SO4 SO4 . K 4 SO4 L 1 975 975 SO4 SO4 . L 4 SO4 L 1 978 978 SO4 SO4 . M 5 HOH G 1 1094 992 HOH WAT . M 5 HOH G 2 1095 993 HOH WAT . M 5 HOH G 3 1096 963 HOH WAT . M 5 HOH G 4 1097 953 HOH WAT . M 5 HOH G 5 1098 943 HOH WAT . M 5 HOH G 6 1099 743 HOH WAT . M 5 HOH G 7 1100 744 HOH WAT . M 5 HOH G 8 1101 745 HOH WAT . M 5 HOH G 9 1102 750 HOH WAT . M 5 HOH G 10 1103 751 HOH WAT . M 5 HOH G 11 1104 752 HOH WAT . M 5 HOH G 12 1105 753 HOH WAT . M 5 HOH G 13 1106 755 HOH WAT . M 5 HOH G 14 1107 756 HOH WAT . M 5 HOH G 15 1108 757 HOH WAT . M 5 HOH G 16 1109 758 HOH WAT . M 5 HOH G 17 1110 759 HOH WAT . M 5 HOH G 18 1111 760 HOH WAT . M 5 HOH G 19 1112 761 HOH WAT . M 5 HOH G 20 1113 762 HOH WAT . M 5 HOH G 21 1114 764 HOH WAT . M 5 HOH G 22 1115 765 HOH WAT . M 5 HOH G 23 1116 766 HOH WAT . M 5 HOH G 24 1117 767 HOH WAT . M 5 HOH G 25 1118 768 HOH WAT . M 5 HOH G 26 1119 769 HOH WAT . M 5 HOH G 27 1120 770 HOH WAT . M 5 HOH G 28 1121 771 HOH WAT . M 5 HOH G 29 1122 772 HOH WAT . M 5 HOH G 30 1123 773 HOH WAT . M 5 HOH G 31 1124 774 HOH WAT . M 5 HOH G 32 1125 776 HOH WAT . M 5 HOH G 33 1126 778 HOH WAT . M 5 HOH G 34 1127 779 HOH WAT . M 5 HOH G 35 1128 780 HOH WAT . M 5 HOH G 36 1129 781 HOH WAT . M 5 HOH G 37 1130 784 HOH WAT . M 5 HOH G 38 1131 785 HOH WAT . M 5 HOH G 39 1132 786 HOH WAT . M 5 HOH G 40 1133 787 HOH WAT . M 5 HOH G 41 1134 788 HOH WAT . M 5 HOH G 42 1135 789 HOH WAT . M 5 HOH G 43 1136 790 HOH WAT . M 5 HOH G 44 1137 791 HOH WAT . M 5 HOH G 45 1138 792 HOH WAT . M 5 HOH G 46 1139 793 HOH WAT . M 5 HOH G 47 1140 794 HOH WAT . M 5 HOH G 48 1141 795 HOH WAT . M 5 HOH G 49 1142 796 HOH WAT . M 5 HOH G 50 1143 797 HOH WAT . M 5 HOH G 51 1144 798 HOH WAT . M 5 HOH G 52 1145 799 HOH WAT . M 5 HOH G 53 1146 800 HOH WAT . M 5 HOH G 54 1147 801 HOH WAT . M 5 HOH G 55 1148 802 HOH WAT . M 5 HOH G 56 1149 803 HOH WAT . M 5 HOH G 57 1150 805 HOH WAT . M 5 HOH G 58 1151 291 HOH WAT . N 5 HOH L 1 746 746 HOH WAT . N 5 HOH L 2 747 747 HOH WAT . N 5 HOH L 3 748 748 HOH WAT . N 5 HOH L 4 749 749 HOH WAT . N 5 HOH L 5 754 754 HOH WAT . N 5 HOH L 6 775 775 HOH WAT . N 5 HOH L 7 777 777 HOH WAT . N 5 HOH L 8 782 782 HOH WAT . N 5 HOH L 9 783 783 HOH WAT . N 5 HOH L 10 804 804 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BG6 . . . C 3 57.747 19.223 67.207 1 43.88 ? C1 BG6 1092 G 1 HETATM 2 C C2 BG6 . . . C 3 56.844 19.769 68.315 1 45.14 ? C2 BG6 1092 G 1 HETATM 3 O O1 BG6 . . . C 3 57.839 20.15 66.18 1 52.73 ? O1 BG6 1092 G 1 HETATM 4 O O5 BG6 . . . C 3 57.215 17.961 66.684 1 53.59 ? O5 BG6 1092 G 1 HETATM 5 C C3 BG6 . . . C 3 56.752 18.728 69.442 1 53.06 ? C3 BG6 1092 G 1 HETATM 6 O O2 BG6 . . . C 3 57.398 20.993 68.799 1 57.26 ? O2 BG6 1092 G 1 HETATM 7 C C4 BG6 . . . C 3 56.156 17.444 68.853 1 53.91 ? C4 BG6 1092 G 1 HETATM 8 O O3 BG6 . . . C 3 55.908 19.214 70.489 1 56.27 ? O3 BG6 1092 G 1 HETATM 9 C C5 BG6 . . . C 3 57.082 16.934 67.73 1 56.67 ? C5 BG6 1092 G 1 HETATM 10 O O4 BG6 . . . C 3 56.045 16.445 69.875 1 51.31 ? O4 BG6 1092 G 1 HETATM 11 C C6 BG6 . . . C 3 56.537 15.668 67.085 1 65.75 ? C6 BG6 1092 G 1 HETATM 12 O O6 BG6 . . . C 3 57.446 15.19 66.05 1 63.19 ? O6 BG6 1092 G 1 HETATM 13 P P BG6 . . . C 3 57.245 13.687 65.384 1 70.41 ? P BG6 1092 G 1 HETATM 14 O O1P BG6 . . . C 3 57.3 12.739 66.558 1 65.32 ? O1P BG6 1092 G 1 HETATM 15 O O2P BG6 . . . C 3 58.399 13.652 64.418 1 68.03 ? O2P BG6 1092 G 1 HETATM 16 O O3P BG6 . . . C 3 55.918 13.823 64.676 1 69.95 ? O3P BG6 1092 G 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #