data_2NZV # _model_server_result.job_id xK2W8A_s5Mc1IuM8WUOs5g _model_server_result.datetime_utc '2024-12-27 01:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2128}' # _entry.id 2NZV # _exptl.entry_id 2NZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NZV _cell.length_a 69.77 _cell.length_b 69.77 _cell.length_c 231.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 69.77 69.77 115.53 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 45 L LYS 45 1_555 B N SEP 46 L SEP 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C SEP 46 L SEP 46 1_555 B N ILE 47 L ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 70 n n P1 O2P FBP sing 71 n n P1 O3P FBP sing 72 n n P1 O1 FBP sing 73 n n O2P HOP2 FBP sing 74 n n O3P HOP3 FBP sing 75 n n O1 C1 FBP sing 76 n n C1 C2 FBP sing 77 n n C1 H11 FBP sing 78 n n C1 H12 FBP sing 79 n n C2 O2 FBP sing 80 n n C2 C3 FBP sing 81 n n C2 O5 FBP sing 82 n n O2 HO2 FBP sing 83 n n C3 O3 FBP sing 84 n n C3 C4 FBP sing 85 n n C3 H3 FBP sing 86 n n O3 HO3 FBP sing 87 n n C4 O4 FBP sing 88 n n C4 C5 FBP sing 89 n n C4 H4 FBP sing 90 n n O4 HO4 FBP sing 91 n n C5 O5 FBP sing 92 n n C5 C6 FBP sing 93 n n C5 H5 FBP sing 94 n n C6 O6 FBP sing 95 n n C6 H61 FBP sing 96 n n C6 H62 FBP sing 97 n n O6 P2 FBP sing 98 n n P2 O4P FBP doub 99 n n P2 O5P FBP sing 100 n n P2 O6P FBP sing 101 n n O5P HOP5 FBP sing 102 n n O6P HOP6 FBP sing 103 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2NZV _atom_sites.fract_transf_matrix[1][1] 0.014333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FBP G 1 2128 2128 FBP FBP . D 4 SO4 G 1 745 745 SO4 SO4 . E 4 SO4 G 1 945 945 SO4 SO4 . F 4 SO4 G 1 946 946 SO4 SO4 . G 4 SO4 G 1 966 966 SO4 SO4 . H 4 SO4 G 1 995 995 SO4 SO4 . I 4 SO4 L 1 975 975 SO4 SO4 . J 4 SO4 L 1 978 978 SO4 SO4 . K 5 HOH G 1 943 943 HOH WAT . K 5 HOH G 2 953 953 HOH WAT . K 5 HOH G 3 992 992 HOH WAT . K 5 HOH G 4 993 993 HOH WAT . L 5 HOH L 1 963 963 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . C 3 11.636 46.675 67.845 1 74.35 ? P1 FBP 2128 G 1 HETATM 2 O O1P FBP . . . C 3 12.008 46.006 66.429 1 73.46 ? O1P FBP 2128 G 1 HETATM 3 O O2P FBP . . . C 3 12.359 45.948 68.955 1 73.44 ? O2P FBP 2128 G 1 HETATM 4 O O3P FBP . . . C 3 10.136 46.638 67.886 1 76.98 ? O3P FBP 2128 G 1 HETATM 5 O O1 FBP . . . C 3 12.219 48.099 67.722 1 71.62 ? O1 FBP 2128 G 1 HETATM 6 C C1 FBP . . . C 3 12.157 48.952 68.835 1 65.13 ? C1 FBP 2128 G 1 HETATM 7 C C2 FBP . . . C 3 12.838 50.203 68.325 1 60.54 ? C2 FBP 2128 G 1 HETATM 8 O O2 FBP . . . C 3 14.169 49.844 67.908 1 63.39 ? O2 FBP 2128 G 1 HETATM 9 C C3 FBP . . . C 3 12.924 51.418 69.405 1 56.44 ? C3 FBP 2128 G 1 HETATM 10 O O3 FBP . . . C 3 13.705 52.539 68.881 1 52.68 ? O3 FBP 2128 G 1 HETATM 11 C C4 FBP . . . C 3 11.43 51.669 69.568 1 55.61 ? C4 FBP 2128 G 1 HETATM 12 O O4 FBP . . . C 3 10.975 50.517 70.328 1 54.35 ? O4 FBP 2128 G 1 HETATM 13 C C5 FBP . . . C 3 11.042 51.792 68.035 1 56.63 ? C5 FBP 2128 G 1 HETATM 14 O O5 FBP . . . C 3 11.961 50.832 67.328 1 57.32 ? O5 FBP 2128 G 1 HETATM 15 C C6 FBP . . . C 3 11.492 53.164 67.541 1 60.51 ? C6 FBP 2128 G 1 HETATM 16 O O6 FBP . . . C 3 11.26 53.458 66.119 1 66.69 ? O6 FBP 2128 G 1 HETATM 17 P P2 FBP . . . C 3 10.575 54.708 65.423 1 69.93 ? P2 FBP 2128 G 1 HETATM 18 O O4P FBP . . . C 3 10.559 54.338 63.901 1 68.86 ? O4P FBP 2128 G 1 HETATM 19 O O5P FBP . . . C 3 11.507 55.914 65.751 1 67.67 ? O5P FBP 2128 G 1 HETATM 20 O O6P FBP . . . C 3 9.15 54.808 66.047 1 67.02 ? O6P FBP 2128 G 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #