data_2O0C # _model_server_result.job_id i5_NqDz6m2dHrHcx-i-hrQ _model_server_result.datetime_utc '2024-11-07 22:13:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2O0C # _exptl.entry_id 2O0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O0C _cell.length_a 123.564 _cell.length_b 123.564 _cell.length_c 123.564 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -z+1/2,-x,y+1/2 0 0 -1 -1 0 0 0 1 0 61.782 0 61.782 3 'crystal symmetry operation' 10_545 -y,z-1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 0 -61.782 61.782 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D N NO . A NO 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc3 B NE2 HIS 105 B HIS 105 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F N NO . B NO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2O0C _atom_sites.fract_transf_matrix[1][1] 0.008093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 NO A 1 600 600 NO NO . E 2 HEM B 1 501 501 HEM HEM . F 3 NO B 1 601 601 NO NO . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 5 HOH HOH . G 4 HOH A 3 603 6 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 9 HOH HOH . G 4 HOH A 6 606 13 HOH HOH . G 4 HOH A 7 607 14 HOH HOH . G 4 HOH A 8 608 19 HOH HOH . G 4 HOH A 9 609 21 HOH HOH . G 4 HOH A 10 610 25 HOH HOH . G 4 HOH A 11 611 27 HOH HOH . G 4 HOH A 12 612 28 HOH HOH . G 4 HOH A 13 613 29 HOH HOH . G 4 HOH A 14 614 32 HOH HOH . G 4 HOH A 15 615 33 HOH HOH . G 4 HOH A 16 616 34 HOH HOH . G 4 HOH A 17 617 35 HOH HOH . G 4 HOH A 18 618 36 HOH HOH . G 4 HOH A 19 619 37 HOH HOH . G 4 HOH A 20 620 39 HOH HOH . G 4 HOH A 21 621 40 HOH HOH . G 4 HOH A 22 622 44 HOH HOH . G 4 HOH A 23 623 47 HOH HOH . G 4 HOH A 24 624 49 HOH HOH . G 4 HOH A 25 625 52 HOH HOH . G 4 HOH A 26 626 53 HOH HOH . G 4 HOH A 27 627 54 HOH HOH . G 4 HOH A 28 628 56 HOH HOH . G 4 HOH A 29 629 58 HOH HOH . G 4 HOH A 30 630 59 HOH HOH . G 4 HOH A 31 631 60 HOH HOH . G 4 HOH A 32 632 62 HOH HOH . H 4 HOH B 1 602 1 HOH HOH . H 4 HOH B 2 603 3 HOH HOH . H 4 HOH B 3 604 4 HOH HOH . H 4 HOH B 4 605 7 HOH HOH . H 4 HOH B 5 606 10 HOH HOH . H 4 HOH B 6 607 11 HOH HOH . H 4 HOH B 7 608 12 HOH HOH . H 4 HOH B 8 609 15 HOH HOH . H 4 HOH B 9 610 16 HOH HOH . H 4 HOH B 10 611 17 HOH HOH . H 4 HOH B 11 612 18 HOH HOH . H 4 HOH B 12 613 20 HOH HOH . H 4 HOH B 13 614 22 HOH HOH . H 4 HOH B 14 615 23 HOH HOH . H 4 HOH B 15 616 24 HOH HOH . H 4 HOH B 16 617 26 HOH HOH . H 4 HOH B 17 618 30 HOH HOH . H 4 HOH B 18 619 31 HOH HOH . H 4 HOH B 19 620 38 HOH HOH . H 4 HOH B 20 621 41 HOH HOH . H 4 HOH B 21 622 42 HOH HOH . H 4 HOH B 22 623 43 HOH HOH . H 4 HOH B 23 624 45 HOH HOH . H 4 HOH B 24 625 46 HOH HOH . H 4 HOH B 25 626 48 HOH HOH . H 4 HOH B 26 627 50 HOH HOH . H 4 HOH B 27 628 51 HOH HOH . H 4 HOH B 28 629 55 HOH HOH . H 4 HOH B 29 630 57 HOH HOH . H 4 HOH B 30 631 61 HOH HOH . H 4 HOH B 31 632 63 HOH HOH . H 4 HOH B 32 633 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 4.244 20.624 72.52 1 35.88 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . C 2 2.027 16.427 71.587 1 36.55 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . C 2 3.048 17.16 66.93 1 35.27 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . C 2 4.233 21.742 67.808 1 36.08 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . C 2 3.616 19.413 72.654 1 36.25 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . C 2 3.393 18.752 73.924 1 37.79 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . C 2 2.784 17.589 73.664 1 36.91 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . C 2 2.611 17.482 72.237 1 36.07 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . C 2 2.337 16.517 74.676 1 38.57 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . C 2 3.807 19.315 75.309 1 38.84 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . C 2 2.751 20.285 75.84 1 41.09 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . C 2 2.51 20.167 77.333 1 44.51 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . C 2 2.946 19.189 78.002 1 48.23 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . C 2 1.859 21.078 77.893 1 46.87 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . C 2 2.185 16.238 70.242 1 37.1 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . C 2 1.894 15.022 69.514 1 36.36 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . C 2 2.191 15.241 68.234 1 37.82 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . C 2 2.665 16.596 68.105 1 36.42 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . C 2 1.373 13.724 70.148 1 38.52 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . C 2 2.069 14.277 67.047 1 39.76 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . C 2 1.088 13.376 67.041 1 45.66 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . C 2 3.449 18.455 66.785 1 35.18 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . C 2 3.853 19.033 65.525 1 36.2 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . C 2 4.183 20.297 65.748 1 35.57 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . C 2 3.999 20.56 67.164 1 35.69 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . C 2 3.908 18.297 64.17 1 35.44 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . C 2 4.665 21.266 64.661 1 37.1 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . C 2 4.577 22.588 64.837 1 40.39 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . C 2 4.518 21.84 69.151 1 36.09 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . C 2 5.28 22.889 69.802 1 35.25 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . C 2 5.278 22.544 71.292 1 35.73 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . C 2 4.525 21.311 71.366 1 35.2 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . C 2 5.928 24.108 69.125 1 34.99 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . C 2 5.955 23.323 72.454 1 37.21 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . C 2 4.917 23.766 73.48 1 41.88 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . C 2 4.687 25.267 73.467 1 43.67 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . C 2 4.909 25.959 72.438 1 42.66 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . C 2 4.263 25.791 74.522 1 44.85 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . C 2 3.131 18.61 71.637 1 33.17 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . C 2 2.66 17.192 69.351 1 35.74 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . C 2 3.55 19.412 67.777 1 33.39 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . C 2 4.1 20.932 70.099 1 34.34 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . C 2 3.163 19.129 69.757 1 36.14 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #