data_2O0G # _model_server_result.job_id BwIcAsSepi8OQV8Wn48WMg _model_server_result.datetime_utc '2025-01-07 16:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2o0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2O0G # _exptl.entry_id 2O0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2O0G _cell.length_a 123.629 _cell.length_b 123.629 _cell.length_c 123.629 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2O0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D C CMO . A CMO 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc3 C FE HEM . A HEM 500 1_555 D O CMO . A CMO 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc4 B NE2 HIS 105 B HIS 105 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 E FE HEM . B HEM 501 1_555 F C CMO . B CMO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc6 E FE HEM . B HEM 501 1_555 F O CMO . B CMO 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 2O0G _atom_sites.fract_transf_matrix[1][1] 0.008089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 CMO A 1 600 600 CMO CMO . E 2 HEM B 1 501 501 HEM HEM . F 3 CMO B 1 601 601 CMO CMO . G 4 HOH A 1 601 4 HOH HOH . G 4 HOH A 2 602 6 HOH HOH . G 4 HOH A 3 603 7 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 10 HOH HOH . G 4 HOH A 6 606 11 HOH HOH . G 4 HOH A 7 607 13 HOH HOH . G 4 HOH A 8 608 15 HOH HOH . G 4 HOH A 9 609 17 HOH HOH . G 4 HOH A 10 610 18 HOH HOH . G 4 HOH A 11 611 19 HOH HOH . G 4 HOH A 12 612 21 HOH HOH . G 4 HOH A 13 613 23 HOH HOH . G 4 HOH A 14 614 24 HOH HOH . G 4 HOH A 15 615 25 HOH HOH . G 4 HOH A 16 616 26 HOH HOH . G 4 HOH A 17 617 28 HOH HOH . G 4 HOH A 18 618 32 HOH HOH . G 4 HOH A 19 619 37 HOH HOH . G 4 HOH A 20 620 38 HOH HOH . G 4 HOH A 21 621 39 HOH HOH . G 4 HOH A 22 622 40 HOH HOH . G 4 HOH A 23 623 41 HOH HOH . G 4 HOH A 24 624 43 HOH HOH . G 4 HOH A 25 625 44 HOH HOH . G 4 HOH A 26 626 46 HOH HOH . G 4 HOH A 27 627 48 HOH HOH . G 4 HOH A 28 628 49 HOH HOH . G 4 HOH A 29 629 52 HOH HOH . G 4 HOH A 30 630 54 HOH HOH . G 4 HOH A 31 631 58 HOH HOH . G 4 HOH A 32 632 61 HOH HOH . G 4 HOH A 33 633 62 HOH HOH . G 4 HOH A 34 634 63 HOH HOH . G 4 HOH A 35 635 65 HOH HOH . G 4 HOH A 36 636 68 HOH HOH . G 4 HOH A 37 637 69 HOH HOH . G 4 HOH A 38 638 73 HOH HOH . G 4 HOH A 39 639 74 HOH HOH . G 4 HOH A 40 640 75 HOH HOH . G 4 HOH A 41 641 77 HOH HOH . G 4 HOH A 42 642 78 HOH HOH . G 4 HOH A 43 643 79 HOH HOH . G 4 HOH A 44 644 81 HOH HOH . G 4 HOH A 45 645 82 HOH HOH . G 4 HOH A 46 646 86 HOH HOH . G 4 HOH A 47 647 87 HOH HOH . G 4 HOH A 48 648 88 HOH HOH . G 4 HOH A 49 649 91 HOH HOH . G 4 HOH A 50 650 92 HOH HOH . G 4 HOH A 51 651 94 HOH HOH . G 4 HOH A 52 652 97 HOH HOH . G 4 HOH A 53 653 99 HOH HOH . G 4 HOH A 54 654 101 HOH HOH . G 4 HOH A 55 655 102 HOH HOH . G 4 HOH A 56 656 103 HOH HOH . G 4 HOH A 57 657 104 HOH HOH . G 4 HOH A 58 658 105 HOH HOH . G 4 HOH A 59 659 107 HOH HOH . G 4 HOH A 60 660 108 HOH HOH . G 4 HOH A 61 661 109 HOH HOH . G 4 HOH A 62 662 110 HOH HOH . G 4 HOH A 63 663 114 HOH HOH . G 4 HOH A 64 664 115 HOH HOH . G 4 HOH A 65 665 116 HOH HOH . G 4 HOH A 66 666 117 HOH HOH . G 4 HOH A 67 667 121 HOH HOH . H 4 HOH B 1 602 1 HOH HOH . H 4 HOH B 2 603 2 HOH HOH . H 4 HOH B 3 604 3 HOH HOH . H 4 HOH B 4 605 5 HOH HOH . H 4 HOH B 5 606 9 HOH HOH . H 4 HOH B 6 607 12 HOH HOH . H 4 HOH B 7 608 14 HOH HOH . H 4 HOH B 8 609 16 HOH HOH . H 4 HOH B 9 610 20 HOH HOH . H 4 HOH B 10 611 22 HOH HOH . H 4 HOH B 11 612 27 HOH HOH . H 4 HOH B 12 613 29 HOH HOH . H 4 HOH B 13 614 30 HOH HOH . H 4 HOH B 14 615 31 HOH HOH . H 4 HOH B 15 616 33 HOH HOH . H 4 HOH B 16 617 34 HOH HOH . H 4 HOH B 17 618 35 HOH HOH . H 4 HOH B 18 619 36 HOH HOH . H 4 HOH B 19 620 42 HOH HOH . H 4 HOH B 20 621 45 HOH HOH . H 4 HOH B 21 622 47 HOH HOH . H 4 HOH B 22 623 50 HOH HOH . H 4 HOH B 23 624 51 HOH HOH . H 4 HOH B 24 625 53 HOH HOH . H 4 HOH B 25 626 55 HOH HOH . H 4 HOH B 26 627 56 HOH HOH . H 4 HOH B 27 628 57 HOH HOH . H 4 HOH B 28 629 59 HOH HOH . H 4 HOH B 29 630 60 HOH HOH . H 4 HOH B 30 631 64 HOH HOH . H 4 HOH B 31 632 66 HOH HOH . H 4 HOH B 32 633 67 HOH HOH . H 4 HOH B 33 634 70 HOH HOH . H 4 HOH B 34 635 71 HOH HOH . H 4 HOH B 35 636 72 HOH HOH . H 4 HOH B 36 637 76 HOH HOH . H 4 HOH B 37 638 80 HOH HOH . H 4 HOH B 38 639 83 HOH HOH . H 4 HOH B 39 640 84 HOH HOH . H 4 HOH B 40 641 85 HOH HOH . H 4 HOH B 41 642 89 HOH HOH . H 4 HOH B 42 643 90 HOH HOH . H 4 HOH B 43 644 93 HOH HOH . H 4 HOH B 44 645 95 HOH HOH . H 4 HOH B 45 646 96 HOH HOH . H 4 HOH B 46 647 98 HOH HOH . H 4 HOH B 47 648 100 HOH HOH . H 4 HOH B 48 649 106 HOH HOH . H 4 HOH B 49 650 111 HOH HOH . H 4 HOH B 50 651 112 HOH HOH . H 4 HOH B 51 652 113 HOH HOH . H 4 HOH B 52 653 118 HOH HOH . H 4 HOH B 53 654 119 HOH HOH . H 4 HOH B 54 655 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -9.434 34.138 79.787 1 31.84 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 -13.578 32.087 81.341 1 35.58 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 -12.459 33.38 85.833 1 39.61 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 -7.983 34.796 84.448 1 38.85 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 -10.685 33.538 79.827 1 37.33 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 -11.517 33.221 78.67 1 34.8 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 -12.659 32.659 79.119 1 32.54 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 -12.585 32.602 80.554 1 34.17 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 -13.872 32.128 78.324 1 29.35 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 -11.119 33.49 77.202 1 36.56 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 -10.084 32.447 76.763 1 37.31 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 -10.048 32.236 75.266 1 40.65 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 -10.926 32.761 74.532 1 42.65 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 -9.126 31.525 74.786 1 44.45 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 -13.663 32.306 82.683 1 37.82 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 -14.806 32.003 83.509 1 41.83 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 -14.49 32.362 84.757 1 41.81 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 -13.147 32.898 84.748 1 36.65 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 -16.136 31.387 83 1 41.78 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 -15.384 32.244 86.007 1 51.14 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 -16.088 31.124 86.218 1 57.37 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 -11.162 33.846 85.839 1 37.26 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 -10.461 34.264 87.022 1 39.77 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 -9.225 34.655 86.684 1 38.99 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 -9.087 34.506 85.239 1 37.78 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 -11.065 34.25 88.444 1 46.05 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 -8.193 35.165 87.72 1 40.96 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 -6.946 35.5 87.397 1 43.24 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 -7.986 34.905 83.058 1 35.74 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 -7.042 35.641 82.242 1 32.61 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 -7.49 35.446 80.788 1 33.97 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 -8.674 34.596 80.857 1 33.04 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 -5.837 36.468 82.721 1 37.81 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 -6.813 36.045 79.533 1 35.32 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 -6.558 34.949 78.502 1 40.62 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 -5.084 34.709 78.328 1 40.24 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 -4.294 35.021 79.254 1 38.03 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 -4.705 34.203 77.244 1 44.26 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 -11.377 33.143 80.973 1 32.7 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 -12.662 32.854 83.464 1 35.21 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 -10.303 34.014 84.757 1 34.37 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 -8.929 34.32 82.203 1 31.98 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 -10.779 33.609 82.844 1 39.38 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #