data_2O1O
#
_model_server_result.job_id            8h3BmYH9feeacRLmvUHZTQ 
_model_server_result.datetime_utc      '2025-08-05 00:40:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2o1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":400}' 
#
_entry.id    2O1O 
#
_exptl.entry_id    2O1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.112 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2O1O 
_cell.length_a            101.758 
_cell.length_b            101.758 
_cell.length_c            75.313 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2O1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 115 A ASP 115 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc2 A OD2 ASP 115 A ASP 115 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc3 A OD2 ASP 119 A ASP 119 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc4 A OD2 ASP 119 A ASP 119 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc5 A OD1 ASN 254 A ASN 254 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc6 F O11 RIS . A RIS 400 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc7 F O16 RIS . A RIS 400 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc8 F O15 RIS . A RIS 400 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc9 F O12 RIS . A RIS 400 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc10 F O15 RIS . A RIS 400 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc11 C MG MG . A MG 501 1_555 K O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc12 C MG MG . A MG 501 1_555 K O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc13 C MG MG . A MG 501 1_555 K O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc14 E MG MG . A MG 503 1_555 K O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc15 E MG MG . A MG 503 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc16 B OD2 ASP 115 B ASP 115 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc17 B OD2 ASP 119 B ASP 119 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
metalc ? metalc18 B OD2 ASP 119 B ASP 119 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc19 B OD2 ASP 187 B ASP 187 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc20 B OD1 ASN 254 B ASN 254 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc21 B NZ LYS 273 B LYS 273 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc22 J O11 RIS . B RIS 400 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc23 J O16 RIS . B RIS 400 1_555 G MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc24 J O12 RIS . B RIS 400 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc25 J O15 RIS . B RIS 400 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc26 J O15 RIS . B RIS 400 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc27 H MG MG . B MG 502 1_555 L O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc28 H MG MG . B MG 502 1_555 L O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc29 I MG MG . B MG 503 1_555 L O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
#
_chem_comp.formula           'C7 H11 N O7 P2' 
_chem_comp.formula_weight    283.112 
_chem_comp.id                RIS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Risedronate 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P9 RIS sing 277 n n 
O12 H12 RIS sing 278 n n 
P9 O11 RIS doub 279 n n 
P9 O10 RIS sing 280 n n 
P9 C8 RIS sing 281 n n 
C8 O13 RIS sing 282 n n 
C8 P14 RIS sing 283 n n 
C8 C7 RIS sing 284 n n 
O13 H13 RIS sing 285 n n 
P14 O16 RIS sing 286 n n 
P14 O15 RIS sing 287 n n 
P14 O17 RIS doub 288 n n 
O16 H16 RIS sing 289 n n 
O15 H15 RIS sing 290 n n 
C7 C2 RIS sing 291 n n 
C7 HC71 RIS sing 292 n n 
C7 HC72 RIS sing 293 n n 
C2 C1 RIS doub 294 n y 
C2 C3 RIS sing 295 n y 
C1 C6 RIS sing 296 n y 
C1 HC1 RIS sing 297 n n 
C6 C5 RIS doub 298 n y 
C6 HC6 RIS sing 299 n n 
C5 N4 RIS sing 300 n y 
C5 HC5 RIS sing 301 n n 
N4 C3 RIS doub 302 n y 
C3 HC3 RIS sing 303 n n 
HO1 O10 RIS sing 304 n n 
#
_atom_sites.entry_id                     2O1O 
_atom_sites.fract_transf_matrix[1][1]    0.009827 
_atom_sites.fract_transf_matrix[1][2]    0.005674 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011348 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 501 4 MG MG . 
D 2 MG A 1 502 5 MG MG . 
E 2 MG A 1 503 6 MG MG . 
F 3 RIS A 1 400 2 RIS RIS . 
G 2 MG B 1 501 1 MG MG . 
H 2 MG B 1 502 2 MG MG . 
I 2 MG B 1 503 3 MG MG . 
J 3 RIS B 1 400 1 RIS RIS . 
K 4 HOH A 1 504 4 HOH HOH . 
K 4 HOH A 2 505 13 HOH HOH . 
K 4 HOH A 3 506 14 HOH HOH . 
K 4 HOH A 4 507 15 HOH HOH . 
K 4 HOH A 5 508 16 HOH HOH . 
K 4 HOH A 6 509 18 HOH HOH . 
K 4 HOH A 7 510 22 HOH HOH . 
K 4 HOH A 8 511 23 HOH HOH . 
K 4 HOH A 9 512 24 HOH HOH . 
K 4 HOH A 10 513 25 HOH HOH . 
K 4 HOH A 11 514 26 HOH HOH . 
L 4 HOH B 1 504 1 HOH HOH . 
L 4 HOH B 2 505 2 HOH HOH . 
L 4 HOH B 3 506 3 HOH HOH . 
L 4 HOH B 4 507 5 HOH HOH . 
L 4 HOH B 5 508 6 HOH HOH . 
L 4 HOH B 6 509 7 HOH HOH . 
L 4 HOH B 7 510 8 HOH HOH . 
L 4 HOH B 8 511 9 HOH HOH . 
L 4 HOH B 9 512 10 HOH HOH . 
L 4 HOH B 10 513 11 HOH HOH . 
L 4 HOH B 11 514 12 HOH HOH . 
L 4 HOH B 12 515 17 HOH HOH . 
L 4 HOH B 13 516 19 HOH HOH . 
L 4 HOH B 14 517 20 HOH HOH . 
L 4 HOH B 15 518 21 HOH HOH . 
L 4 HOH B 16 519 27 HOH HOH . 
L 4 HOH B 17 520 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 RIS . . . F 3 -14.671 9.398 12.202 1 39.48 ? O12 RIS 400 A 1 
HETATM 2 P P9 RIS . . . F 3 -14.382 8.238 13.122 1 45.13 ? P9 RIS 400 A 1 
HETATM 3 O O11 RIS . . . F 3 -13.622 8.519 14.397 1 47.17 ? O11 RIS 400 A 1 
HETATM 4 O O10 RIS . . . F 3 -13.73 7.018 12.509 1 43.85 ? O10 RIS 400 A 1 
HETATM 5 C C8 RIS . . . F 3 -15.99 7.632 13.704 1 43.7 ? C8 RIS 400 A 1 
HETATM 6 O O13 RIS . . . F 3 -15.804 6.506 14.537 1 37.44 ? O13 RIS 400 A 1 
HETATM 7 P P14 RIS . . . F 3 -16.87 8.888 14.613 1 43.06 ? P14 RIS 400 A 1 
HETATM 8 O O16 RIS . . . F 3 -16.011 9.357 15.712 1 62.92 ? O16 RIS 400 A 1 
HETATM 9 O O15 RIS . . . F 3 -17.178 9.94 13.625 1 40.31 ? O15 RIS 400 A 1 
HETATM 10 O O17 RIS . . . F 3 -17.989 8.012 15.023 1 42.85 ? O17 RIS 400 A 1 
HETATM 11 C C7 RIS . . . F 3 -16.728 7.126 12.434 1 44.93 ? C7 RIS 400 A 1 
HETATM 12 C C2 RIS . . . F 3 -18.134 6.611 12.731 1 45.88 ? C2 RIS 400 A 1 
HETATM 13 C C1 RIS . . . F 3 -19.177 7.079 11.923 1 41.12 ? C1 RIS 400 A 1 
HETATM 14 C C6 RIS . . . F 3 -20.424 6.477 12.028 1 31.65 ? C6 RIS 400 A 1 
HETATM 15 C C5 RIS . . . F 3 -20.595 5.436 12.903 1 36.51 ? C5 RIS 400 A 1 
HETATM 16 N N4 RIS . . . F 3 -19.592 5.003 13.687 1 41.85 ? N4 RIS 400 A 1 
HETATM 17 C C3 RIS . . . F 3 -18.375 5.558 13.61 1 46.33 ? C3 RIS 400 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           17 
#